See download stats for: Bioconductor annotation packages Bioconductor experiment packages Bioconductor workflow packages

Download stats for Bioconductor software packages

This page was generated on 2024-12-03 08:36:47 -0500 (Tue, 03 Dec 2024).

The number reported next to each package name is the download score, that is, the average number of distinct IPs that “hit” the package each month for the last 12 months (not counting the current month).

Top 75

1	BiocVersion (60249)
2	BiocGenerics (57312)
3	GenomeInfoDb (56357)
4	S4Vectors (56000)
5	zlibbioc (54157)
6	IRanges (53096)
7	XVector (49389)
8	Biobase (48842)
9	Biostrings (48095)
10	GenomicRanges (44523)
11	DelayedArray (41934)
12	BiocParallel (41480)
13	MatrixGenerics (39901)
14	SummarizedExperiment (39455)
15	S4Arrays (39423)
16	SparseArray (39141)
17	KEGGREST (36175)
18	AnnotationDbi (36124)
19	limma (33511)
20	BiocFileCache (26149)
21	Rhtslib (25015)
22	edgeR (24342)
23	GenomicAlignments (24164)
24	Rhdf5lib (23974)
25	Rsamtools (23906)

26	biomaRt (23128)
27	DESeq2 (22052)
28	ggtree (21641)
29	UCSC.utils (21444)
30	rtracklayer (20992)
31	treeio (20711)
32	rhdf5 (20345)
33	BiocIO (20004)
34	GenomicFeatures (19655)
35	rhdf5filters (19654)
36	clusterProfiler (19389)
37	DOSE (19147)
38	graph (18882)
39	GOSemSim (18563)
40	enrichplot (18421)
41	qvalue (18126)
42	fgsea (17895)
43	annotate (17630)
44	BSgenome (16551)
45	beachmat (16154)
46	DelayedMatrixStats (15967)
47	SingleCellExperiment (15803)
48	sparseMatrixStats (15707)
49	ComplexHeatmap (15482)
50	HDF5Array (14701)

51	preprocessCore (14231)
52	BiocSingular (12735)
53	ScaledMatrix (12529)
54	multtest (12454)
55	genefilter (12261)
56	VariantAnnotation (12094)
57	ProtGenerics (11837)
58	AnnotationHub (11418)
59	AnnotationFilter (11154)
60	BiocNeighbors (11075)
61	impute (10655)
62	ensembldb (10074)
63	GEOquery (9758)
64	Rgraphviz (9628)
65	scuttle (9421)
66	RBGL (9415)
67	GSEABase (9040)
68	affyio (8165)
69	affy (8065)
70	ExperimentHub (7766)
71	sva (7530)
72	scater (7294)
73	interactiveDisplayBase (6970)
74	GSVA (6899)
75	BiocBaseUtils (6723)

All software packages

All software package stats in one file: bioc_pkg_stats.tab

All software package download scores in one file: bioc_pkg_scores.tab

See Download stats for Bioconductor software repository (all packages combined)

A

	a4 (129)
	a4Base (188)
	a4Classif (153)
	a4Core (200)
	a4Preproc (201)
	a4Reporting (155)
	aads.rnai (1)
	ABAData (1)
	ABAEnrichment (24)
	abaenrichment (0)
	ABarray (122)
	abc (0)
	abc.data (1)
	abe (0)
	ABHgenotypeR (1)
	abif (1)
	abind (28)
	abseqR (81)
	ABSOLUTE (0)
	ABSSeq (147)
	acde (96)
	ACE (115)
	ace.fma (1)
	acepack (2)
	aCGH (253)
	ACME (126)
	ACTIONet (1)
	ActivePathways (1)
	actuar (1)
	ada (1)
	adabag (1)
	ADaCGH2 (113)
	ADAM (215)
	ADAMgui (117)
	ADAPT (8)
	adaptest (11)
	AdaptGauss (1)
	adbcdrivermanager (1)
	adductData (1)
	adductomicsR (80)
	ade4 (3)
	adegenet (1)
	adegraphics (1)
	adehabitat (1)
	adehabitatLT (1)
	adephylo (1)
	ADGofTest (1)
	ADImpute (91)
	aditools (1)
	adjustedCurves (1)
	admiral (2)
	admiral.test (1)
	admiraldev (2)
	admiralonco (1)
	admiralophtha (1)
	admiralroche (1)
	admisc (11)
	admixtools (0)
	ADMM (0)
	adSplit (110)
	adverSCarial (58)
	AER (1)
	afex (2)
	affio (0)
	AffiXcan (79)
	affxparser (1616)
	affy (8065)
	Affy (1)
	affycomp (135)
	AffyCompatible (52)
	affyContam (157)
	affycoretools (423)
	affydata (4)
	AffyExpress (41)
	affyILM (116)
	affyio (8165)
	affylmGUI (136)
	affyPara (42)
	affypdnn (38)
	affyPLM (1069)
	affyplm (0)
	affyQCReport (45)
	AffyRNADegradation (97)
	AffyTiling (27)
	AGDEX (99)
	aggregateBioVar (89)
	aggregation (0)
	AGHmatrix (0)
	Agi4x44PreProcess (16)
	agilp (117)
	AgiMicroRna (169)
	agricolae (10)
	agridat (1)
	AHMassBank (69)
	AICcmodavg (1)
	aigoraFitMini (1)
	AIMS (416)
	AIPW (0)
	airpart (85)
	airr (1)
	airway (1)
	akima (1)
	alabama (0)
	alabaster (68)
	alabaster.base (2188)
	alabaster.bumpy (108)
	alabaster.files (60)
	alabaster.mae (112)
	alabaster.matrix (2146)
	alabaster.ranges (2066)
	alabaster.sce (745)
	alabaster.schemas (1909)
	alabaster.se (1997)
	alabaster.spatial (110)
	alabaster.string (124)
	alabaster.vcf (116)
	alakazam (1)
	ald (0)
	ALDEx2 (1203)
	aldvmm (1)
	alembic (0)
	alevinQC (105)
	AlgDesign (3)
	alkahest.generic (0)
	ALL (10)

	AllelicImbalance (131)
	alluvial (0)
	almanac (0)
	AlphaBeta (72)
	alphahull (0)
	AlphaMissenseR (52)
	alphashape3d (0)
	alphavantager (1)
	alpine (37)
	ALPS (10)
	AlpsNMR (86)
	alr3 (1)
	alr4 (0)
	alsace (28)
	altair (1)
	altcdfenvs (158)
	amap (1)
	AMARETTO (219)
	ambient (0)
	Amelia (3)
	AmesHousing (0)
	amgen.okta.client (1)
	amgsafetyvis (0)
	amlogger (0)
	AMOUNTAIN (116)
	amplican (108)
	ampliQueso (24)
	AnalysisPageServer (18)
	anamiR (12)
	Anaquin (81)
	ANCOMBC (1229)
	ANCOMBCs (1)
	AneuFinder (113)
	aneufinder (1)
	AneuFinderData (0)
	aneufinderdata (1)
	ANF (80)
	angrycell (1)
	animalcules (231)
	animation (1)
	annaffy (304)
	AnnBuilder (7)
	annbuilder (0)
	anndata (1)
	annmap (134)
	AnnoProbe (1)
	annotate (17630)
	annotation (0)
	AnnotationDbi (36124)
	annotationdbi (1)
	AnnotationFilter (11154)
	AnnotationForge (2216)
	AnnotationFuncs (35)
	AnnotationHub (11418)
	annotationhub (1)
	AnnotationHubData (387)
	annotationTools (156)
	annotatr (499)
	anota (120)
	anota2seq (100)
	anRichment (0)
	antaresProcessing (1)
	anticlust (1)
	antiProfiles (93)
	AnVIL (569)
	AnVILAz (21)
	AnVILBase (45)
	AnVILBilling (67)
	AnVILGCP (21)
	AnVILPublish (78)
	AnVILWorkflow (61)
	anytime (6)
	aod (2)
	APAlyzer (95)
	apcluster (1)
	apComplex (107)
	APCtools (1)
	ape (47)
	apeglm (3647)
	apexcharter (0)
	APL (213)
	apLCMS (1)
	aplot (46)
	appgen (1)
	applera (2)
	appreci8R (104)
	aqp (1)
	archive (1)
	ArchR (0)
	argparse (12)
	argparser (1)
	argus.DS.Credentials (3)
	argusDS.apc.utils (3)
	argusDS.backtesting.engine (3)
	argusDS.data (3)
	argusDS.data.engineering (1)
	argusDS.data.preparation (1)
	argusDS.data.preparation2 (4)
	argusDS.data.visualisation (1)
	argusDS.database (2)
	argusDS.DataValidation (1)
	argusDS.DB.manager.utilities (1)
	argusDS.distributions (1)
	argusDS.driver.importance (2)
	argusDS.FCUtilities (1)
	argusDS.FZ.SourceData (1)
	argusDS.FZ.utils (1)
	argusDS.gamboostLSS (1)
	argusDS.gamlss.distributions (1)
	argusDS.gamlss.forecast (3)
	argusDS.gamlss.modelling (3)
	argusDS.gamlss.smoothers (1)
	argusDS.gamlss.testing (3)
	argusDS.gamlss.utils (2)
	argusDS.GlobalSettings (1)
	argusDS.model.testing (1)
	argusDS.model.tools (3)
	argusDS.model.validation (1)
	argusDS.modeldb (1)
	argusDS.possibility.curves.daily (1)
	argusDS.PossibilityCurves.db.utils (3)
	argusDS.PossibilityCurves.utils (1)
	argusDS.S3 (2)
	argusDS.shiny.utils (1)
	argusDS.signal.backtesting (1)

	argusDS.signal.dataprep (2)
	argusDS.signal.generation (1)
	argusDS.smoothers (1)
	argusDS.spread.trading.utils (2)
	argusDS.Studio.APC (1)
	argusDS.Studio.FC (1)
	argusDS.studio.ml (1)
	argusDS.studio.model.utils (1)
	argusDS.Studio.MyStudio (2)
	argusDS.Studio.permissions (3)
	argusDS.Studio.utils (3)
	argusDS.tabulator (3)
	argusDS.trading.optimization (1)
	argusDS.trading.performance (1)
	argusDS.TradingSignals (1)
	argusDS.UI (2)
	argusDS.utilities (1)
	aricode (1)
	arm (4)
	aroma.affymetrix (8)
	aroma.apd (8)
	aroma.core (8)
	aroma.light (2014)
	ArrayExpress (452)
	arrayexpress (0)
	ArrayExpressHTS (36)
	arrayhelpers (1)
	arrayMagic (6)
	arrayMvout (98)
	arrayop (1)
	arrayQCplot (2)
	arrayQuality (167)
	arrayQualityMetrics (482)
	arrayqualitymetrics (0)
	ArrayTools (40)
	ArrayTV (31)
	ARRmData (1)
	ARRmNormalization (94)
	arrow (22)
	arsenal (1)
	artMS (100)
	arules (1)
	ArvadosR (1)
	ASAFE (73)
	ASCAT (0)
	ascii (1)
	asciicast (1)
	ASEB (89)
	ASExtras4 (0)
	AsgntDAMacro (1)
	ASGSCA (89)
	ash (6)
	ashr (1)
	asht (1)
	ASICS (112)
	AsioHeaders (4)
	askpass (162)
	ASMap (1)
	asmn (6)
	asnipe (0)
	ASpediaFI (15)
	ASpli (124)
	asremlPlus (0)
	assert (0)
	assertive (1)
	assertive.base (1)
	assertive.code (1)
	assertive.data (1)
	assertive.data.uk (1)
	assertive.data.us (1)
	assertive.datetimes (1)
	assertive.files (1)
	assertive.matrices (1)
	assertive.models (1)
	assertive.numbers (1)
	assertive.properties (7)
	assertive.reflection (1)
	assertive.sets (1)
	assertive.strings (1)
	assertive.types (7)
	assertr (2)
	assertthat (2)
	AssessORF (167)
	ASSET (137)
	ASSIGN (147)
	assorthead (1179)
	AssotesteR (0)
	astsa (1)
	ASURAT (80)
	async (1)
	ATACCoGAPS (57)
	ATACseqQC (391)
	ATACseqTFEA (80)
	ATE (1)
	atena (123)
	AtlasRDF (16)
	ATR (0)
	atSNP (102)
	attachment (3)
	attempt (1)
	attract (117)
	AUC (1)
	AUCell (2483)
	audio (1)
	audited (1)
	auth0 (1)
	autometric (1)
	autonomics (70)
	Autotuner (10)
	av (1)
	ava2 (1)
	AWFisher (81)
	aws (2)
	aws.ec2metadata (0)
	aws.s3 (6)
	aws.signature (6)
	awsMethods (1)
	awst (69)
	azcore (1)
	Azimuth (0)
	AzureAuth (1)
	AzureGraph (5)
	AzureRMR (5)
	AzureStor (0)

B

	b64 (1)
	BaalChIP (88)
	babelgene (6)
	babelmixr2 (1)
	babelwhale (0)
	babynames (0)
	BAC (33)
	backports (115)
	bacon (139)
	bacr (0)
	BADER (96)
	badger (0)
	badminton (1)
	BadRegionFinder (80)
	BAGS (101)
	baguette (0)
	bain (1)
	BalancedSampling (0)
	ballgown (642)
	bambu (301)
	bamsignals (1073)
	BANDITS (133)
	bandle (74)
	Banksy (114)
	banocc (102)
	barcodetrackR (72)
	BART (0)
	bartMachine (0)
	bartMachineJARs (0)
	base (1)
	base2grob (1)
	base64 (3)
	base64enc (1)
	base64url (1)
	basecallQC (91)
	basefun (0)
	basemaps (1)
	BaseSpaceR (97)
	Basic4Cseq (100)
	BASiCS (182)
	BASiCStan (103)
	BasicSTARRseq (78)
	basilisk (3770)
	basilisk.utils (3503)
	batchelor (4001)
	BatchJobs (1)
	BatchQC (129)
	batchtools (0)
	battenberg (1)
	BayesFactor (2)
	BayesFM (0)
	BayesianTools (0)
	BayesKnockdown (75)
	bayesm (6)
	bayesmeta (0)
	BayesPeak (33)
	bayespeak (0)
	BayesPen (0)
	bayesplot (11)
	BayesPostEst (1)
	bayesQR (0)
	BayesSpace (264)
	bayestestR (10)
	BayesX (0)
	bayNorm (102)
	baySeq (482)
	bayseq (1)
	BB (1)
	BBCAnalyzer (88)
	BBmisc (1)
	bbmle (14)
	bbotk (1)
	bbr (1)
	bbr.bayes (1)
	bccaEndometrial (1)
	BCEE (0)
	bcellViper (1)
	bcp (1)
	BCRANK (116)
	BCS.OptimizedDesignsForPrism (1)
	BCS.RSB (1)
	bcSeq (81)
	BDgraph (0)
	BDMMAcorrect (32)
	bdsmatrix (14)
	BE (1)
	beachmat (16154)
	beachmat.hdf5 (112)
	beadarray (755)
	beadarraySNP (63)
	BeadDataPackR (620)
	BeadExplorer (5)
	beanplot (1)
	BEARscc (75)
	BEAT (96)
	beaver (1)
	BEclear (98)
	bedr (0)
	beepr (1)
	beer (75)
	beeswarm (1)
	bench (0)
	benchdamic (91)
	benchmarkme (0)
	benchmarkmeData (0)
	benchr (0)
	BentoBox (0)
	berryFunctions (1)
	BERT (43)
	Bessel (0)
	bestglm (1)
	bestNormalize (2)
	betaHMM (41)
	betareg (1)
	betr (32)
	bettermc (1)
	bettr (38)
	BeviMed (0)
	bezier (0)
	BFpack (1)
	BG2 (65)
	bgafun (33)
	BgeeCall (65)
	BgeeDB (160)
	BGLR (1)
	BGmix (27)
	bgs.ggtheme (1)
	bgs.hephaistos (1)
	bgs.hermes (1)
	bgx (105)
	BH (226)
	BHC (87)
	BIApylon (1)
	BiasedUrn (12)
	BIAutils (1)
	bib2df (1)
	bibtex (1)
	BicARE (163)
	biclust (0)

	BIEN (1)
	bife (0)
	BiFET (82)
	biganalytics (0)
	bigassertr (0)
	bigD (6)
	bigdist (0)
	BiGGR (99)
	BIGL (1)
	biglasso (0)
	biglm (4)
	biglmm (0)
	bigmelon (90)
	bigmemory (3)
	bigmemory.sri (3)
	bigmemoryExtras (30)
	bigparallelr (0)
	bigPint (25)
	bigreadr (0)
	bigrquery (14)
	bigsnpr (0)
	bigsparser (1)
	bigstatsr (1)
	bigutils (0)
	bigutilsr (0)
	billboarder (9)
	bim (4)
	BiMax (0)
	binb (1)
	BindingSiteFinder (75)
	bindr (1)
	bindrcpp (1)
	binGroup (0)
	binman (2)
	binom (0)
	binr (0)
	bio3d (5)
	bioassayR (105)
	biobank (1)
	Biobase (48842)
	biobase (1)
	BioBase (1)
	biobroom (240)
	biobtreeR (65)
	bioc::GenomeInfoDbData (0)
	bioCancer (98)
	BioCartaImage (59)
	BiocBaseUtils (6723)
	BiocBook (68)
	BiocBookDemo (3)
	BiocCaseStudies (37)
	BiocCheck (1716)
	biocDatasets (9)
	BiocDockerManager (12)
	BiocFHIR (67)
	BiocFileCache (26149)
	BiocFileCaches (1)
	BiocGenerics (57312)
	BioCGenerics (0)
	biocGraph (275)
	BiocHail (45)
	BiocHubsShiny (96)
	BiocInstaller (288)
	biocinstaller (2)
	Biocinstaller (1)
	BiocInstallerf (0)
	BiocIO (20004)
	BiocManager (324)
	biocmanager (1)
	BiocNeighbors (11075)
	biocneighbors (1)
	BiocOncoTK (78)
	Bioconductor (1)
	bioconductor (0)
	bioconductor-geomxtools (0)
	BioCor (102)
	BiocParallel (41480)
	BiocPkgTools (153)
	biocroxytest (50)
	BiocSet (337)
	BiocSingular (12735)
	BiocSklearn (109)
	BiocStyle (5726)
	biocthis (269)
	BiocVersion (60249)
	Biocversion (1)
	biocversion (1)
	BiocVersionBiocVersion (1)
	biocViews (4367)
	BiocWorkflowTools (187)
	biodb (191)
	biodbChebi (104)
	biodbExpasy (61)
	biodbHmdb (79)
	biodbKegg (77)
	biodbLipidmaps (42)
	biodbMirbase (24)
	biodbNcbi (68)
	biodbNci (75)
	biodbUniprot (67)
	bioDist (281)
	BiodiversityR (1)
	BioGA (19)
	Biogenerics (1)
	BioGenerics (1)
	biom (0)
	biomanager (0)
	BioManager (1)
	biomaRt (23128)
	biomart (1)
	biomartr (1)
	BioMedR (5)
	biomformat (5562)
	BioMM (17)
	biomod2 (1)
	BioMVCClass (100)
	biomvRCNS (102)
	BioNAR (83)
	BioNERO (318)
	BioNet (295)
	BioNetStat (83)
	BioPlex (7)
	BioQC (140)
	BioSeqClass (36)
	biosigner (115)
	biostat3 (1)
	biostatR (0)
	biostatUtil (0)
	Biostring (1)
	Biostrings (48095)
	biostrings (1)
	biosvd (31)
	BioTIP (93)
	biotmle (84)
	biotools (1)
	BioVersion (1)
	biovizBase (5374)
	BiplotML (1)
	BiRewire (158)

	birta (32)
	birte (16)
	biscuiteer (91)
	biscuiteerData (1)
	BiSeq (168)
	bit (91)
	bit64 (54)
	bitops (82)
	BitSeq (44)
	bizdays (2)
	bkbutils (1)
	blacksheepr (88)
	bladderbatch (1)
	BlakerCI (0)
	blastula (1)
	blavaan (1)
	blima (91)
	BLMA (97)
	blme (6)
	blob (60)
	blockcluster (1)
	blockCV (1)
	blockForest (1)
	blockmodeling (1)
	blogdown (0)
	BloodCancerMultiOmics2017 (1)
	BloodGen3Module (163)
	bluster (5633)
	BlythStillCasellaCI (1)
	BMA (1)
	bmcite.SeuratData (1)
	BMisc (0)
	BMix (1)
	bmp (0)
	bmspal (1)
	bnbc (225)
	bnem (82)
	bnlearn (2)
	BOBaFIT (78)
	BOIN (0)
	bold (1)
	bookdown (35)
	Boom (1)
	boomer (1)
	BoomSpikeSlab (1)
	boot (80)
	bootstrap (0)
	borealis (75)
	Boruta (0)
	botor (0)
	box (10)
	box.linters (1)
	BPCells (1)
	bpcp (1)
	BPRMeth (126)
	BPSC (1)
	bRacatus (1)
	BradleyTerry2 (0)
	BRAIN (147)
	brainflowprobes (48)
	brainImageR (4)
	BrainSABER (12)
	BrainStars (30)
	branchpointer (105)
	brave (0)
	breakpointR (83)
	breakpointRdata (1)
	brendaDb (74)
	brew (49)
	BREW3R.r (37)
	BRGenomics (105)
	brglm (0)
	brglm2 (1)
	bricks (0)
	brickster (0)
	bridge (36)
	BridgeDbR (96)
	bridgedist (0)
	bridgesampling (0)
	brio (172)
	brms (1)
	brmsmargins (0)
	broadSeq (22)
	Brobdingnag (1)
	broman (1)
	broom (115)
	broom.helpers (14)
	broom.mixed (1)
	broomExtra (1)
	BrowserViz (180)
	BrowserVizDemo (9)
	bs4Dash (8)
	BSgenome (16551)
	bsgenome (0)
	BSGenome (0)
	BSgenome.Celegans.UCSC.ce2 (1)
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	stJoincount (79)
	stopwords (1)
	storr (0)
	strandannotate (1)
	strandCheckR (79)
	strawr (1)
	Streamer (96)
	strex (1)
	string (0)
	STRINGdb (1284)
	stringdist (20)
	stringfish (8)
	stringi (374)
	stringr (181)
	striprtf (0)
	STROMA4 (32)
	strucchange (1)
	struct (167)
	Structstrings (177)
	structToolbox (124)
	StructuralVariantAnnotation (244)
	structuralvariantannotation (1)
	stxBrain.SeuratData (1)
	styler (58)
	SubCellBarCode (80)
	subplex (1)
	subselect (0)
	subSeq (96)
	SUITOR (58)
	SummarizedBenchmark (45)
	SummarizedExperiment (39455)
	summarizedExperiment (1)
	summarytools (1)
	Summix (64)
	sunburstR (0)
	superheat (0)
	SuperLearner (1)
	superpc (0)
	supersigs (153)
	SuppDists (3)
	supraHex (486)
	surfaltr (65)
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	survClust (21)
	survcomp (1299)
	surveillance (1)
	survex (1)
	survey (5)
	survival (240)
	survivalROC (1)
	survminer (4)
	survMisc (1)
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	survPen (0)
	survPresmooth (0)
	survtmle (1)
	survtype (72)
	Sushi (66)
	susieR (18)
	sva (7530)
	svaNUMT (76)
	SVAPLSseq (12)
	svaRetro (79)
	svd (1)
	svDialogs (1)
	svglite (27)
	svGUI (0)
	SVM2CRM (16)
	SVMDO (120)
	svMisc (1)
	svUnit (1)
	swagger (1)
	swamp (1)
	SWATH2stats (85)
	SwathXtend (87)
	swfdr (90)
	Swiffer (1)
	SwimR (21)
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	switchBox (143)
	switchde (79)
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	synapser (1)
	synapsis (60)
	synapter (162)
	synbreed (1)
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	SynExtend (76)
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	syntenet (143)
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	systemfit (0)
	systemfonts (295)
	systemPipeR (1200)
	systempiper (1)
	systemPipeRdata (0)
	systemPipeShiny (82)
	systemPipeTools (78)
	syuzhet (0)

T

	table1 (3)
	tableHTML (1)
	tableone (1)
	tables (2)
	tabulapdf (1)
	tabulizer (1)
	tabulizerjars (1)
	tadar (70)
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	tanggle (87)
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	tarchetypes (6)
	target (77)
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	targets (9)
	TargetScore (99)
	TargetSearch (101)
	targetsearch (0)
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	taxize (1)
	taxonomizr (1)
	taylor (1)
	TBSignatureProfiler (87)
	TCC (242)
	TCCGUI (1)
	TCGAbiolinks (4171)
	TCGAbiolinksGUI (34)
	TCGAbiolinksGUI.data (1)
	TCGAplot (1)
	TCGAutils (829)
	tcltk (1)
	tcltk2 (1)
	tclust (1)
	TCseq (277)
	TDARACNE (34)
	TDbasedUFE (89)
	TDbasedUFEadv (72)
	TeachingDemos (2)
	teal (2)
	teal.builder (1)
	teal.builder.modules (1)
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	teal.data (3)
	teal.goshawk (1)
	teal.logger (1)
	teal.modules.clinical (1)
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	teal.osprey (1)
	teal.reporter (1)
	teal.slice (3)
	teal.transform (1)
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	TEKRABber (202)
	templater (1)
	tensor (1)
	tensorA (12)
	tensorflow (16)
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	tenXplore (70)
	TEQC (112)
	tergm (0)
	tern (3)
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	tern.mmrm (2)
	tern.rbmi (1)
	ternarynet (85)
	terra (35)
	terraTCGAdata (81)
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	tester (1)
	TestGenerator (1)
	testit (0)
	testthat (296)
	texreg (2)
	text2vec (1)
	textfeatures (1)
	textrecipes (1)
	textshape (1)
	textshaping (183)
	TFARM (73)
	tfautograph (1)
	TFBSTools (3590)
	tfbstools (0)
	tfdatasets (0)
	TFEA.ChIP (99)
	TFHAZ (77)
	TFisher (1)
	TFMPvalue (7)
	tfrmt (1)
	tfruns (13)
	tfse (1)
	TFutils (100)
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	tgxWebservices (0)
	TH.data (117)
	thematic (6)
	themeSanofi (1)
	themis (0)
	this.path (1)
	threejs (1)
	ThresholdROC (1)
	tibbke (1)
	tibble (37)
	tictoc (10)
	tidybayes (1)
	tidybulk (317)
	tidycensus (13)
	tidyclust (2)
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	tidyCoverage (41)

	tidydr (1)
	tidyFlowCore (20)
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	tidymodels (15)
	tidyomics (57)
	tidyposterior (1)
	tidypredict (1)
	tidyproject (1)
	tidyproteomics (1)
	tidyquant (1)
	tidyr (249)
	tidyrules (0)
	tidysbml (12)
	tidyselect (234)
	tidySEM (1)
	tidyseurat (1)
	tidySingleCellExperiment (230)
	tidySpatialExperiment (52)
	tidySummarizedExperiment (390)
	tidytable (1)
	tidyterra (1)
	tidytext (5)
	tidytlg (1)
	tidytof (19)
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	tidytree (40)
	tidyTree (0)
	tidyverse (20)
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	tidyxl (1)
	tiff (3)
	tigre (113)
	tigris (16)
	tikzDevice (1)
	tiledb (1)
	TileDBArray (79)
	tiledbsoma (1)
	tilingArray (180)
	timechange (188)
	timecourse (117)
	timeDate (43)
	timeOmics (102)
	TimeProjection (1)
	timereg (1)
	TimerQuant (0)
	timescape (91)
	timeSeries (11)
	TimeSeriesExperiment (17)
	timetk (2)
	timevis (1)
	TimiRGeN (44)
	Timma (0)
	TIN (83)
	TINC (0)
	tinkr (0)
	tinysnapshot (0)
	tinytable (1)
	tinytest (0)
	tinytex (392)
	tippy (0)
	TiPS (1)
	tis (0)
	TissueEnrich (266)
	TitanCNA (115)
	titanic (0)
	tkrgl (0)
	tkrplot (0)
	tkWidgets (1355)
	tkwidgets (1)
	tldrm (1)
	TLMoments (1)
	tLOH (67)
	tm (5)
	tmap (1)
	tmaptools (1)
	TMB (36)
	tmcn (1)
	TMixClust (99)
	tmle (2)
	TMSig (6)
	tmvnsim (1)
	tmvtnorm (1)
	TNBC.CMS (45)
	TNO (1)
	TNRS (1)
	TnT (50)
	TOAST (438)
	toastui (8)
	tofsims (18)
	tokenizers (4)
	tokupika (0)
	tolerance (0)
	tomoda (73)
	tomoseqr (61)
	tools (1)
	toOrdinal (1)
	TOP (62)
	ToPASeq (23)
	topconfects (195)
	topdownr (99)
	topGO (3003)
	topgo (0)
	topicmodels (1)
	topr (5)
	torch (1)
	tornado (1)
	tourr (1)
	ToxicoGx (89)
	Tplyr (2)
	TPP (130)
	TPP2D (75)
	tpSVG (40)

	tracee (1)
	tracktables (164)
	trackViewer (592)
	trackviewer (0)
	tradeSeq (535)
	tradeseq (1)
	traits (1)
	TrajectoryGeometry (58)
	TrajectoryUtils (1970)
	tram (0)
	TraMineR (0)
	transcriptogramer (88)
	transcriptR (98)
	transformGamPoi (95)
	transformr (0)
	transite (81)
	translations (1)
	tRanslatome (232)
	transmogR (39)
	transomics2cytoscape (84)
	transport (1)
	TransView (88)
	TraRe (9)
	traseR (87)
	Travel (5)
	traviz (74)
	tree (0)
	TreeAndLeaf (141)
	treeclimbR (41)
	treeio (20711)
	treekoR (84)
	treemap (1)
	treemapify (1)
	treesitter.r (1)
	treespace (1)
	TreeSummarizedExperiment (1979)
	TREG (67)
	trena (30)
	TReNA (3)
	trendeval (1)
	Trendy (79)
	TRESS (110)
	triangle (1)
	tricycle (258)
	triebeard (3)
	triform (34)
	trigger (107)
	trimcluster (0)
	trio (135)
	tripack (0)
	triplex (100)
	tripr (66)
	tRNA (162)
	tRNAdbImport (140)
	tRNAscanImport (91)
	TRONCO (101)
	trtf (0)
	truncdist (0)
	truncnorm (4)
	truncreg (0)
	trust (0)
	tryCatchLog (1)
	TSAR (52)
	tsbox (1)
	TSCAN (684)
	tscR (15)
	tseries (10)
	tseriesChaos (0)
	tsfeatures (2)
	tsibble (1)
	tsibbledata (1)
	tsModel (0)
	tsna (0)
	tsne (1)
	tsoutliers (2)
	TSP (16)
	tspair (37)
	TSRchitect (19)
	TSSi (28)
	tsvio (1)
	ttdo (0)
	ttgsea (103)
	TTMap (79)
	TTR (7)
	ttservice (1)
	tufte (0)
	tune (15)
	tuneR (0)
	tuneRanger (1)
	TurboNorm (101)
	Turnover.cells.pSILAC.TMT (1)
	TVTB (91)
	twang (2)
	twangContinuous (0)
	tweeDEseq (179)
	tweedie (0)
	tweenr (33)
	twilight (144)
	twoddpcr (80)
	TwoSampleMR (0)
	twosamples (1)
	txcutr (67)
	TxDb.Hsapiens.UCSC.hg19.knownGene (5)
	TxDb.Hsapiens.UCSC.hg38.knownGene (1)
	TxDb.Mmusculus.UCSC.mm10.ensGene (0)
	TxDb.Mmusculus.UCSC.mm10.knownGene (5)
	TxDb.Mmusculus.UCSC.mm9.knownGene (0)
	txdbmaker (2255)
	tximeta (1070)
	tximport (3434)
	tximportDat (0)
	tximportData (3)
	TxRegInfra (14)
	txtq (0)
	TypeInfo (82)
	tzdb (45)

U

V

	V.PhyloMaker2 (1)
	V8 (69)
	VAExprs (65)
	validate (1)
	valr (1)
	VAM (1)
	VanillaICE (296)
	vaplot (0)
	vapour (0)
	VarCon (66)
	variables (0)
	variancePartition (968)
	VariantAnnotation (12094)
	variantannotation (1)
	VariantExperiment (65)
	VariantFiltering (118)
	VariantTools (187)
	VariantWarehouseBMS (1)
	varImp (0)
	vars (1)
	vasp (6)
	VaSP (79)
	vaultr (1)
	vbmp (123)
	VBsparsePCA (0)
	vcd (4)
	VCFArray (82)
	vcfR (1)

	vcr (0)
	vctrs (238)
	vdbR (0)
	vdiffr (2)
	VDJdive (71)
	Vega (26)
	VegaMC (90)
	vegan (26)
	vegawidget (1)
	velociraptor (157)
	velocyto.R (1)
	veloviz (64)
	vembedr (0)
	vendormetadatahelpers (0)
	venn (9)
	VennDetail (277)
	VennDiagram (1)
	venneuler (1)
	VERSO (67)
	vetiver (1)
	VGAM (16)
	VGAMextra (0)
	vhydeg (0)
	VIBER (0)
	vidger (135)
	VIM (1)
	vimp (1)
	VineCopula (0)

	vioplot (1)
	vip (1)
	viper (760)
	vipor (17)
	viridis (204)
	viridisLite (61)
	viridislite (0)
	virtualArray (12)
	visdat (1)
	ViSEAGO (140)
	VisiumIO (43)
	visNetwork (3)
	visOmopResults (1)
	visR (1)
	vissE (120)
	vistime (25)
	vitae (1)
	Voyager (174)
	vpc (0)
	VplotR (78)
	vroom (131)
	vscDebugger (1)
	vsclust (69)
	vsn (5163)
	vtpnet (105)
	vulcan (89)

W

	WA43966.shareR.3043877 (1)
	waddR (67)
	waffle (1)
	waiter (10)
	wakefield (0)
	waldo (190)
	wallace (1)
	warp (16)
	wateRmelon (864)
	wavClusteR (88)
	waved (1)
	waveslim (1)
	waveTiling (32)
	wdm (0)
	wdman (2)
	weaver (98)
	webbioc (106)
	webchem (1)
	webdriver (0)
	webfakes (1)
	WebGestaltR (1)
	webmockr (0)
	webp (1)
	webshot (25)

	webshot2 (2)
	websocket (17)
	webutils (2)
	WeightIt (2)
	weights (3)
	WeightSVM (0)
	weitrix (77)
	WES.1KG.WUGSC (1)
	wesanderson (1)
	WGCNA (12)
	WGScan (0)
	WGSmapp (1)
	whereami (0)
	whisker (26)
	whitening (0)
	whoami (1)
	widgetframe (1)
	widgetInvoke (5)
	widgetTools (1354)
	widgettools (1)
	wiggleplotr (193)
	WikidataQueryServiceR (0)
	WikidataR (0)
	WikipediR (4)

	wikitaxa (0)
	wildmeta (0)
	winboxr (1)
	withr (308)
	wk (43)
	wmtsa (1)
	worcs (1)
	wordcloud (0)
	wordcloud2 (0)
	workflowr (1)
	workflows (13)
	workflowsets (13)
	WorldFlora (1)
	worrms (2)
	wpm (77)
	wppi (50)
	wrapr (1)
	Wrench (1665)
	writexl (31)
	WriteXLS (4)
	wrMisc (1)
	WRS2 (2)

X

Y

	y2hStat (2)
	yaImpute (1)
	yaml (275)
	yamss (88)

	YAPSA (109)
	yaqcaffy (36)
	yardstick (20)
	yarn (145)

	ylab.utils (1)
	ymlthis (0)
	yspec (1)
	yulab.utils (69)

Z

	zCompositions (10)
	zeallot (0)
	zellkonverter (1394)
	zelusutils (1)
	zen4R (0)
	zenith (150)

	zFPKM (136)
	zinbwave (975)
	zingeR (1)
	zip (191)
	Ziploc (1)
	zitools (15)

	zli (1)
	zlibbioc (54157)
	zoo (29)
	ZygosityPredictor (62)

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