See download stats for: Bioconductor annotation packages Bioconductor experiment packages Bioconductor workflow packages

Download stats for Bioconductor software packages

This page was generated on 2025-02-04 06:50:59 -0500 (Tue, 04 Feb 2025).

The number reported next to each package name is the download score, that is, the average number of distinct IPs that “hit” the package each month for the last 12 months (not counting the current month).

Top 75

1	BiocVersion (59927)
2	BiocGenerics (57362)
3	GenomeInfoDb (55792)
4	S4Vectors (55488)
5	zlibbioc (54434)
6	IRanges (54022)
7	XVector (49503)
8	Biobase (48908)
9	Biostrings (48895)
10	GenomicRanges (44818)
11	DelayedArray (41826)
12	BiocParallel (41419)
13	MatrixGenerics (40382)
14	S4Arrays (40126)
15	SparseArray (39770)
16	SummarizedExperiment (39585)
17	AnnotationDbi (35990)
18	KEGGREST (35976)
19	limma (33884)
20	UCSC.utils (27528)
21	BiocFileCache (25833)
22	Rhtslib (24544)
23	edgeR (23909)
24	Rsamtools (23667)
25	Rhdf5lib (23548)

26	GenomicAlignments (23454)
27	biomaRt (22362)
28	DESeq2 (22112)
29	ggtree (21931)
30	treeio (21020)
31	rtracklayer (20622)
32	rhdf5 (20430)
33	clusterProfiler (19936)
34	BiocIO (19697)
35	rhdf5filters (19541)
36	GenomicFeatures (19215)
37	enrichplot (19155)
38	graph (19108)
39	DOSE (19015)
40	GOSemSim (18690)
41	fgsea (18579)
42	qvalue (18321)
43	annotate (17293)
44	BSgenome (16190)
45	beachmat (16079)
46	SingleCellExperiment (15885)
47	DelayedMatrixStats (15853)
48	ComplexHeatmap (15661)
49	sparseMatrixStats (15511)
50	HDF5Array (14832)

51	preprocessCore (14149)
52	BiocSingular (12641)
53	ScaledMatrix (12434)
54	multtest (12146)
55	genefilter (11952)
56	VariantAnnotation (11724)
57	ProtGenerics (11583)
58	AnnotationHub (11448)
59	AnnotationFilter (10992)
60	BiocNeighbors (10923)
61	impute (10603)
62	ensembldb (9798)
63	GEOquery (9560)
64	Rgraphviz (9424)
65	RBGL (9278)
66	scuttle (9276)
67	GSEABase (8958)
68	affyio (8052)
69	affy (7949)
70	ExperimentHub (7712)
71	sva (7413)
72	GSVA (7087)
73	scater (7001)
74	BiocBaseUtils (6807)
75	MultiAssayExperiment (6342)

All software packages

All software package stats in one file: bioc_pkg_stats.tab

All software package download scores in one file: bioc_pkg_scores.tab

See Download stats for Bioconductor software repository (all packages combined)

A

	a4 (147)
	a4Base (176)
	a4Classif (143)
	a4Core (189)
	a4Preproc (185)
	a4Reporting (143)
	aads.rnai (1)
	ABAData (1)
	ABAEnrichment (31)
	abaenrichment (0)
	ABarray (142)
	abc (0)
	abc.data (1)
	abe (0)
	ABHgenotypeR (1)
	abif (1)
	abind (38)
	abseqR (93)
	ABSOLUTE (0)
	ABSSeq (165)
	acde (111)
	ACE (124)
	ace.fma (1)
	acepack (2)
	aCGH (238)
	ACME (151)
	ACTIONet (1)
	ActivePathways (1)
	actuar (1)
	ada (1)
	adabag (0)
	ADaCGH2 (129)
	ADAM (183)
	ADAMgui (103)
	ADAPT (14)
	adaptest (12)
	AdaptGauss (1)
	adbcdrivermanager (1)
	adductData (0)
	adductomicsR (90)
	ade4 (3)
	adegenet (1)
	adegraphics (1)
	adehabitat (1)
	adehabitatLT (1)
	adephylo (1)
	ADGofTest (0)
	ADImpute (102)
	aditools (0)
	adjustedCurves (0)
	admiral (2)
	admiral.test (0)
	admiraldev (2)
	admiralonco (1)
	admiralophtha (1)
	admiralroche (1)
	admisc (7)
	admixtools (0)
	ADMM (0)
	adSplit (128)
	adverSCarial (68)
	AER (1)
	afex (2)
	affio (0)
	AffiXcan (89)
	affxparser (1566)
	affy (7949)
	Affy (1)
	affycomp (150)
	AffyCompatible (63)
	affyContam (147)
	affycoretools (397)
	affydata (4)
	AffyExpress (51)
	affyILM (134)
	affyio (8052)
	affylmGUI (156)
	affyPara (51)
	affypdnn (47)
	affyPLM (982)
	affyplm (0)
	affyQCReport (55)
	AffyRNADegradation (116)
	AffyTiling (35)
	AGDEX (121)
	aggregateBioVar (98)
	aggregation (0)
	AGHmatrix (0)
	Agi4x44PreProcess (18)
	agilp (135)
	AgiMicroRna (184)
	agricolae (10)
	agridat (1)
	AHMassBank (78)
	AICcmodavg (1)
	aigoraFitMini (1)
	AIMS (384)
	AIPW (0)
	airpart (95)
	airr (1)
	airway (1)
	akima (1)
	alabama (0)
	alabaster (80)
	alabaster.base (2676)
	alabaster.bumpy (91)
	alabaster.files (68)
	alabaster.mae (97)
	alabaster.matrix (2653)
	alabaster.ranges (2534)
	alabaster.sce (878)
	alabaster.schemas (2363)
	alabaster.se (2461)
	alabaster.spatial (95)
	alabaster.string (106)
	alabaster.vcf (96)
	alakazam (1)
	ald (0)
	ALDEx2 (1189)
	aldvmm (1)
	alembic (0)
	alevinQC (114)
	AlgDesign (4)
	alkahest.generic (0)
	ALL (10)
	AllelicImbalance (148)
	alluvial (0)

	almanac (0)
	AlphaBeta (83)
	alphahull (0)
	AlphaMissenseR (67)
	alphashape3d (0)
	AlphaSimR (1)
	alphavantager (1)
	alpine (39)
	ALPS (10)
	AlpsNMR (102)
	alr3 (1)
	alr4 (0)
	alsace (36)
	altair (0)
	altcdfenvs (153)
	amap (1)
	AMARETTO (192)
	ambient (0)
	Amelia (3)
	AmesHousing (0)
	amgen.okta.client (1)
	amgsafetyvis (1)
	amlogger (0)
	AMOUNTAIN (104)
	amplican (119)
	ampliQueso (31)
	AnalysisPageServer (26)
	anamiR (13)
	Anaquin (94)
	ANCOMBC (1205)
	ANCOMBCs (1)
	Andromeda (1)
	AneuFinder (127)
	aneufinder (0)
	AneuFinderData (0)
	aneufinderdata (0)
	ANF (98)
	angrycell (1)
	animalcules (241)
	animation (1)
	annaffy (292)
	AnnBuilder (8)
	annbuilder (0)
	anndata (1)
	annmap (114)
	AnnoProbe (1)
	annotate (17293)
	annotation (0)
	AnnotationDbi (35990)
	annotationdbi (1)
	annotationDBI (1)
	AnnotationFilter (10992)
	AnnotationForge (2118)
	AnnotationFuncs (43)
	AnnotationHub (11448)
	annotationhub (1)
	AnnotationHubData (369)
	annotationTools (145)
	annotatr (478)
	anota (128)
	anota2seq (110)
	anRichment (0)
	antaresProcessing (1)
	anticlust (1)
	antiProfiles (109)
	AnVIL (537)
	AnVILAz (35)
	AnVILBase (83)
	AnVILBilling (77)
	AnVILGCP (37)
	AnVILPublish (88)
	AnVILWorkflow (70)
	anytime (11)
	aod (2)
	APAlyzer (106)
	apcluster (1)
	apComplex (125)
	APCtools (0)
	ape (54)
	apeglm (3660)
	apexcharter (1)
	APL (182)
	apLCMS (1)
	aplot (43)
	appgen (0)
	applera (3)
	appreci8R (95)
	aqp (1)
	archive (2)
	ArchR (0)
	argparse (12)
	argparser (1)
	argus.DS.Credentials (3)
	argusDS.apc.utils (3)
	argusDS.backtesting.engine (2)
	argusDS.data (3)
	argusDS.data.engineering (1)
	argusDS.data.preparation (1)
	argusDS.data.preparation2 (4)
	argusDS.data.visualisation (0)
	argusDS.database (2)
	argusDS.DataValidation (1)
	argusDS.DB.manager.utilities (1)
	argusDS.distributions (0)
	argusDS.driver.importance (2)
	argusDS.FCUtilities (1)
	argusDS.FZ.SourceData (1)
	argusDS.FZ.utils (1)
	argusDS.gamboostLSS (0)
	argusDS.gamlss.distributions (1)
	argusDS.gamlss.forecast (2)
	argusDS.gamlss.modelling (3)
	argusDS.gamlss.smoothers (0)
	argusDS.gamlss.testing (3)
	argusDS.gamlss.utils (2)
	argusDS.GlobalSettings (1)
	argusDS.model.testing (1)
	argusDS.model.tools (3)
	argusDS.model.validation (0)
	argusDS.modeldb (1)
	argusDS.possibility.curves.daily (1)
	argusDS.PossibilityCurves.db.utils (3)
	argusDS.PossibilityCurves.utils (1)
	argusDS.S3 (2)
	argusDS.shiny.utils (1)
	argusDS.signal.backtesting (1)
	argusDS.signal.dataprep (2)

	argusDS.signal.generation (1)
	argusDS.smoothers (0)
	argusDS.spread.trading.utils (2)
	argusDS.Studio.APC (1)
	argusDS.Studio.FC (1)
	argusDS.studio.ml (1)
	argusDS.studio.model.utils (1)
	argusDS.Studio.MyStudio (2)
	argusDS.Studio.permissions (3)
	argusDS.Studio.utils (3)
	argusDS.studio.visualisations (1)
	argusDS.tabulator (3)
	argusDS.trading.optimization (1)
	argusDS.trading.performance (1)
	argusDS.TradingSignals (1)
	argusDS.UI (2)
	argusDS.utilities (1)
	aricode (1)
	arm (4)
	aroma.affymetrix (8)
	aroma.apd (9)
	aroma.core (8)
	aroma.light (1932)
	ArrayExpress (426)
	arrayexpress (0)
	ArrayExpressHTS (45)
	arrayhelpers (0)
	arrayMagic (7)
	arrayMvout (117)
	arrayop (1)
	arrayQCplot (3)
	arrayQuality (208)
	arrayQualityMetrics (458)
	arrayqualitymetrics (0)
	ArrayTools (49)
	ArrayTV (37)
	ARRmData (0)
	ARRmNormalization (113)
	arrow (22)
	arsenal (1)
	artMS (110)
	arules (1)
	ArvadosR (1)
	ASAFE (84)
	ASCAT (0)
	ascii (1)
	asciicast (1)
	ASEB (108)
	ASExtras4 (0)
	AsgntDAMacro (1)
	ASGSCA (107)
	ash (6)
	ashr (1)
	asht (0)
	ASICS (125)
	AsioHeaders (4)
	askpass (139)
	ASMap (1)
	asmn (6)
	asnipe (0)
	ASpediaFI (17)
	ASpli (138)
	asremlPlus (0)
	assert (0)
	assertive (1)
	assertive.base (1)
	assertive.code (1)
	assertive.data (1)
	assertive.data.uk (1)
	assertive.data.us (1)
	assertive.datetimes (1)
	assertive.files (1)
	assertive.matrices (1)
	assertive.models (1)
	assertive.numbers (1)
	assertive.properties (3)
	assertive.reflection (1)
	assertive.sets (1)
	assertive.strings (1)
	assertive.types (3)
	assertr (1)
	assertthat (2)
	AssessORF (176)
	ASSET (141)
	ASSIGN (155)
	assorthead (2908)
	AssotesteR (0)
	astsa (0)
	ASURAT (90)
	async (1)
	ATACCoGAPS (54)
	ATACseqQC (391)
	ATACseqTFEA (88)
	ATE (1)
	atena (94)
	AtlasRDF (22)
	ATR (0)
	atSNP (113)
	attachment (2)
	attempt (1)
	attract (136)
	AUC (1)
	AUCell (2507)
	audio (1)
	audited (1)
	auth0 (1)
	automap (3)
	autometric (1)
	autonomics (80)
	autoslideR (1)
	Autotuner (10)
	av (1)
	ava2 (1)
	AWFisher (92)
	aws (2)
	aws.ec2metadata (0)
	aws.s3 (6)
	aws.signature (6)
	awsMethods (1)
	awst (80)
	azcore (1)
	Azimuth (0)
	AzureAuth (1)
	AzureGraph (4)
	AzureRMR (4)
	AzureStor (0)

B

	b64 (1)
	BaalChIP (103)
	babelgene (6)
	babelmixr2 (1)
	babelwhale (0)
	babynames (0)
	BAC (44)
	backports (123)
	bacon (157)
	bacr (0)
	BADER (113)
	badger (1)
	badminton (1)
	BadRegionFinder (93)
	BAGS (119)
	baguette (0)
	bain (1)
	BalancedSampling (0)
	ballgown (577)
	bambu (286)
	bamsignals (1023)
	BANDITS (113)
	bandle (85)
	Banksy (160)
	banocc (109)
	barcodetrackR (83)
	BART (0)
	bartMachine (0)
	bartMachineJARs (0)
	BARTools (1)
	base (1)
	base2grob (1)
	base64 (3)
	base64enc (1)
	base64url (1)
	basecallQC (104)
	basefun (0)
	basemaps (1)
	BaseSpaceR (118)
	Basic4Cseq (117)
	BASiCS (158)
	BASiCStan (112)
	BasicSTARRseq (92)
	basilisk (3467)
	basilisk.utils (3265)
	batchelor (3868)
	BatchJobs (1)
	BatchQC (140)
	batchtools (0)
	battenberg (1)
	BayesFactor (2)
	BayesFM (0)
	BayesianTools (0)
	BayesKnockdown (88)
	bayesm (1)
	bayesmeta (0)
	BayesPeak (44)
	bayespeak (0)
	BayesPen (0)
	bayesplot (11)
	BayesPostEst (1)
	bayesQR (0)
	BayesSpace (266)
	bayestestR (11)
	BayesX (0)
	bayNorm (115)
	baySeq (478)
	bayseq (1)
	BB (1)
	BBCAnalyzer (106)
	BBmisc (1)
	bbmle (13)
	bbotk (1)
	bbr (1)
	bbr.bayes (1)
	bccaEndometrial (1)
	BCEE (0)
	bcellViper (0)
	bcp (1)
	BCRANK (132)
	BCS.OptimizedDesignsForPrism (1)
	BCS.RSB (1)
	bcSeq (91)
	BDgraph (0)
	BDMMAcorrect (34)
	bdsmatrix (14)
	BE (1)
	beachmat (16079)
	beachmat.hdf5 (128)
	beachmat.tiledb (7)
	beadarray (674)
	beadarraySNP (69)
	BeadDataPackR (567)
	BeadExplorer (5)
	beanplot (1)
	BEARscc (76)
	BEAT (116)
	beaver (1)
	BEclear (119)
	bedr (0)
	beepr (1)
	beer (85)
	beeswarm (1)
	bench (0)
	benchdamic (95)
	benchmarkme (0)
	benchmarkmeData (0)
	benchr (0)
	BentoBox (0)
	berryFunctions (1)
	BERT (57)
	Bessel (0)
	bestglm (0)
	bestNormalize (2)
	betaHMM (54)
	betareg (1)
	betr (41)
	bettermc (1)
	bettr (52)
	BeviMed (0)
	bezier (0)
	BFpack (1)
	BG2 (74)
	bgafun (44)
	BgeeCall (76)
	BgeeDB (155)
	BGLR (1)
	BGmix (36)
	bgs.ggtheme (1)
	bgs.hephaistos (1)
	bgs.hermes (1)
	bgx (114)
	BH (236)
	BHC (90)
	BIApylon (1)
	BiasedUrn (12)
	BIAutils (1)
	bib2df (1)
	bibtex (1)
	BicARE (150)

	biclust (0)
	BIEN (1)
	bife (0)
	BiFET (96)
	biganalytics (0)
	bigassertr (0)
	bigD (13)
	bigdist (0)
	BiGGR (112)
	BIGL (0)
	biglasso (0)
	biglm (4)
	biglmm (0)
	bigmelon (101)
	bigmemory (3)
	bigmemory.sri (3)
	bigmemoryExtras (36)
	bigparallelr (0)
	bigPint (26)
	bigreadr (0)
	bigrquery (14)
	bigsnpr (0)
	bigsparser (1)
	bigstatsr (1)
	bigutils (0)
	bigutilsr (0)
	billboarder (8)
	bim (4)
	BiMax (0)
	binb (1)
	BindingSiteFinder (85)
	bindr (1)
	bindrcpp (1)
	binGroup (0)
	binman (2)
	binom (0)
	binr (0)
	bio3d (4)
	bioassayR (121)
	biobank (1)
	Biobase (48908)
	biobase (1)
	BioBase (1)
	biobroom (245)
	biobtreeR (76)
	bioc::GenomeInfoDbData (0)
	bioCancer (109)
	BioCartaImage (68)
	BiocBaseUtils (6807)
	BiocBook (81)
	BiocBookDemo (3)
	BiocCaseStudies (50)
	BiocCheck (1731)
	biocDatasets (9)
	BiocDockerManager (14)
	BiocFHIR (76)
	BiocFileCache (25833)
	BiocFileCaches (1)
	BiocGenerics (57362)
	BioCGenerics (0)
	biocGraph (255)
	BiocHail (48)
	BiocHubsShiny (104)
	BiocInstaller (254)
	biocinstaller (1)
	Biocinstaller (1)
	BiocInstallerf (0)
	BiocIO (19697)
	BiocManager (342)
	biocmanager (1)
	BiocNeighbors (10923)
	biocneighbors (0)
	BiocOncoTK (75)
	Bioconductor (1)
	bioconductor (0)
	bioconductor-geomxtools (0)
	BioCor (111)
	BiocParallel (41419)
	BiocPkgTools (156)
	biocroxytest (63)
	BiocSet (328)
	BiocSingular (12641)
	BiocSklearn (120)
	BiocStyle (5556)
	biocthis (254)
	BiocVersion (59927)
	Biocversion (1)
	biocversion (1)
	BiocVersionBiocVersion (1)
	biocViews (4357)
	BiocWorkflowTools (192)
	biodb (167)
	biodbChebi (95)
	biodbExpasy (58)
	biodbHmdb (90)
	biodbKegg (74)
	biodbLipidmaps (40)
	biodbMirbase (22)
	biodbNcbi (78)
	biodbNci (86)
	biodbUniprot (77)
	bioDist (276)
	BiodiversityR (1)
	BioGA (33)
	Biogenerics (0)
	BioGenerics (0)
	biom (0)
	biomanager (0)
	BioManager (1)
	biomaRt (22362)
	biomart (1)
	biomartr (1)
	BioMedR (5)
	biomformat (5494)
	BioMM (18)
	biomod2 (1)
	BioMVCClass (125)
	biomvRCNS (122)
	BioNAR (94)
	BioNERO (265)
	BioNet (282)
	BioNetStat (79)
	BioPlex (8)
	BioQC (151)
	BioSeqClass (47)
	biosigner (124)
	biostat3 (0)
	biostatR (0)
	biostatUtil (0)
	Biostring (1)
	Biostrings (48895)
	biostrings (1)
	biosvd (39)
	BioTIP (103)
	biotmle (95)
	biotools (1)
	BioVersion (1)
	biovizBase (5181)
	BiplotML (1)
	BiRewire (183)

	birta (41)
	birte (22)
	biscuiteer (101)
	biscuiteerData (0)
	BiSeq (138)
	bit (106)
	bit64 (78)
	bitops (99)
	BitSeq (53)
	bizdays (2)
	bkbutils (1)
	blacksheepr (97)
	bladderbatch (0)
	BlakerCI (0)
	blastula (1)
	blavaan (1)
	blima (109)
	BLMA (108)
	blme (6)
	blob (43)
	blockcluster (1)
	blockCV (1)
	blockForest (1)
	blockmodeling (1)
	blocksdesign (1)
	blogdown (0)
	BloodCancerMultiOmics2017 (1)
	BloodGen3Module (133)
	bluster (5625)
	BlythStillCasellaCI (1)
	BMA (1)
	bmcite.SeuratData (0)
	BMisc (0)
	BMix (1)
	bmp (0)
	bmspal (1)
	bnbc (196)
	bnem (90)
	bnlearn (2)
	BOBaFIT (88)
	BOIN (0)
	bold (1)
	bookdown (32)
	Boom (1)
	boomer (1)
	BoomSpikeSlab (1)
	boot (88)
	bootstrap (0)
	borealis (88)
	Boruta (0)
	botor (0)
	box (11)
	box.linters (1)
	BPCells (1)
	bpcp (0)
	BPRMeth (114)
	BPSC (1)
	bRacatus (1)
	BradleyTerry2 (0)
	BRAIN (163)
	brainflowprobes (44)
	brainImageR (5)
	BrainSABER (13)
	BrainStars (41)
	branchpointer (114)
	brave (0)
	breakpointR (98)
	breakpointRdata (0)
	brendaDb (86)
	brew (41)
	BREW3R.r (52)
	BRGenomics (96)
	brglm (0)
	brglm2 (1)
	bricks (0)
	brickster (0)
	bridge (48)
	BridgeDbR (113)
	bridgedist (0)
	bridgesampling (0)
	brio (165)
	brms (1)
	brmsmargins (0)
	broadSeq (35)
	Brobdingnag (1)
	broman (1)
	broom (114)
	broom.helpers (17)
	broom.mixed (1)
	broomExtra (1)
	BrowserViz (172)
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	SPIAT (143)
	spicyR (186)
	SpidermiR (54)
	spikeLI (100)
	spiky (74)
	spillR (59)
	spkTools (113)
	splancs (11)
	splatter (442)
	splice2neo (1)
	splicegear (44)
	spliceR (34)
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	SplicingFactory (73)
	SplicingGraphs (139)
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	srnadiff (86)
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	sscore (59)
	sscu (86)
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	sSeq (194)
	ssh (4)
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	statnet.common (1)
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	stats4 (1)
	statsExpressions (3)
	statTarget (124)
	STdeconvolve (150)
	stdmchecks (0)
	stdReg (0)
	stepNorm (117)
	StepReg (1)
	stepwiseCM (34)
	stevedore (0)
	sticky (0)
	stinepack (3)
	stJoincount (89)
	stopwords (1)
	storr (0)
	strandannotate (1)
	strandCheckR (90)
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	Streamer (117)
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	STRINGdb (1297)
	stringdist (16)
	stringfish (7)
	stringi (337)
	stringr (122)
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	strucchange (1)
	struct (166)
	Structstrings (153)
	structToolbox (135)
	StructuralVariantAnnotation (238)
	structuralvariantannotation (0)
	stxBrain.SeuratData (1)
	styler (38)
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	subplex (1)
	subselect (0)
	subSeq (112)
	SUITOR (66)
	SummarizedBenchmark (42)
	SummarizedExperiment (39585)
	summarizedExperiment (1)
	summarytools (1)
	Summix (75)
	sunburstR (0)
	superheat (0)
	SuperLearner (1)
	superpc (0)
	supersigs (163)
	SuppDists (3)
	supraHex (394)
	surfaltr (77)
	SurfR (46)
	survClust (34)
	survcomp (1289)
	surveillance (1)
	survex (0)
	survey (5)
	survival (253)
	survivalROC (1)
	survminer (6)
	survMisc (1)
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	survPen (0)
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	survtmle (1)
	survtype (83)
	Sushi (71)
	susieR (18)
	sva (7413)
	svaNUMT (84)
	SVAPLSseq (13)
	svaRetro (86)
	svd (1)
	svDialogs (1)
	svglite (22)
	svGUI (0)
	SVM2CRM (24)
	SVMDO (91)
	svMisc (1)
	svUnit (0)
	swagger (1)
	swamp (1)
	SWATH2stats (100)
	SwathXtend (95)
	swfdr (101)
	Swiffer (1)
	SwimR (29)
	swirl (0)
	switchBox (140)
	switchde (91)
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	synapser (1)
	synapsis (69)
	synapter (167)
	synbreed (1)
	synergyfinder (236)
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	systemfonts (272)
	systemPipeR (1206)
	systempiper (1)
	systemPipeRdata (0)
	systemPipeShiny (90)
	systemPipeTools (85)
	syuzhet (0)

T

	table1 (3)
	tableHTML (1)
	tableone (0)
	tables (1)
	tabulapdf (1)
	tabulizer (1)
	tabulizerjars (1)
	tadar (79)
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	tarchetypes (5)
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	targets (9)
	TargetScore (119)
	TargetSearch (122)
	targetsearch (0)
	TarSeqQC (35)
	taskscheduleR (1)
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	taxize (2)
	taxonomizr (1)
	taylor (1)
	TBSignatureProfiler (90)
	TCC (254)
	TCCGUI (1)
	TCGAbiolinks (4249)
	TCGAbiolinksGUI (34)
	TCGAbiolinksGUI.data (1)
	TCGAplot (1)
	TCGAutils (738)
	tcltk (1)
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	tclust (1)
	TCseq (387)
	TDARACNE (46)
	TDbasedUFE (86)
	TDbasedUFEadv (80)
	TeachingDemos (2)
	teal (2)
	teal.builder (1)
	teal.builder.modules (1)
	teal.code (2)
	teal.data (3)
	teal.goshawk (1)
	teal.logger (2)
	teal.modules.clinical (1)
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	teal.osprey (1)
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	teal.transform (1)
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	TEKRABber (173)
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	tensor (1)
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	tester (1)
	TestGenerator (1)
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	testthat (276)
	texreg (1)
	text2vec (1)
	textfeatures (1)
	textrecipes (1)
	textshape (1)
	textshaping (185)
	TFARM (86)
	tfautograph (1)
	TFBSTools (3511)
	tfbstools (1)
	tfdatasets (0)
	TFEA.ChIP (114)
	TFHAZ (88)
	TFisher (1)
	TFMPvalue (7)
	tfrmt (1)
	tfruns (13)
	tfse (1)
	TFutils (103)
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	TH.data (122)
	thematic (5)
	themeSanofi (1)
	themis (0)
	this.path (1)
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	ThresholdROC (0)
	tibbke (1)
	tibble (22)
	tictoc (10)
	tidybayes (1)
	tidybulk (320)
	tidycensus (6)
	tidyclust (2)
	tidycmprsk (1)
	tidyCoverage (54)
	tidydr (0)

	tidyFlowCore (34)
	tidyfst (1)
	tidygraph (31)
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	tidyjson (1)
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	tidyomics (74)
	tidyposterior (1)
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	tidyquant (1)
	tidyr (257)
	tidyrules (0)
	tidysbml (24)
	tidyselect (257)
	tidySEM (1)
	tidyseurat (1)
	tidySingleCellExperiment (229)
	tidySpatialExperiment (66)
	tidySummarizedExperiment (354)
	tidytable (1)
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	tidytext (4)
	tidytlg (1)
	tidytof (32)
	tidytransit (1)
	tidytree (30)
	tidyTree (0)
	tidyverse (19)
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	tidyxl (1)
	tiff (3)
	tigre (130)
	tigris (14)
	tikzDevice (1)
	tiledb (1)
	TileDBArray (93)
	tiledbsoma (1)
	tilingArray (169)
	timechange (196)
	timecourse (136)
	timeDate (41)
	timeOmics (113)
	TimeProjection (1)
	timereg (1)
	TimerQuant (0)
	timescape (101)
	timeSeries (13)
	TimeSeriesExperiment (18)
	timetk (1)
	timevis (1)
	TimiRGeN (38)
	Timma (0)
	TIN (99)
	TINC (0)
	tinkr (1)
	tinysnapshot (0)
	tinytable (1)
	tinytest (0)
	tinytex (364)
	tippy (0)
	TiPS (1)
	tis (0)
	TissueEnrich (245)
	TitanCNA (131)
	titanic (0)
	tkrgl (0)
	tkrplot (0)
	tkWidgets (1353)
	tkwidgets (1)
	tldrm (1)
	TLMoments (1)
	tLOH (75)
	tm (5)
	tmap (1)
	tmaptools (1)
	TMB (21)
	tmcn (1)
	TMixClust (113)
	tmle (2)
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	tmvnsim (1)
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	TNBC.CMS (43)
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	TNRS (1)
	TnT (65)
	TOAST (433)
	toastui (9)
	tofsims (19)
	tokenizers (3)
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	tolerance (0)
	tomoda (85)
	tomoseqr (73)
	tools (1)
	toOrdinal (1)
	TOP (71)
	ToPASeq (30)
	topconfects (178)
	topdownr (101)
	topGO (2885)
	topgo (0)
	topicmodels (1)
	topr (6)
	torch (1)
	tornado (0)
	tourr (1)
	ToxicoGx (101)
	Tplyr (2)
	TPP (144)
	TPP2D (85)
	tpSVG (52)
	tracee (1)
	tracktables (199)

	trackViewer (603)
	trackviewer (0)
	tradeSeq (543)
	tradeseq (0)
	traits (1)
	TrajectoryGeometry (67)
	TrajectoryUtils (1938)
	tram (0)
	TraMineR (0)
	transcriptogramer (96)
	transcriptR (109)
	transformGamPoi (104)
	transformr (0)
	transite (94)
	translations (1)
	tRanslatome (210)
	transmogR (50)
	transomics2cytoscape (96)
	transport (1)
	TransView (96)
	TraRe (10)
	traseR (107)
	Travel (5)
	traviz (75)
	tree (1)
	TreeAndLeaf (147)
	treeclimbR (56)
	treeio (21020)
	treekoR (96)
	treemap (1)
	treemapify (0)
	treesitter.r (1)
	treespace (0)
	TreeSummarizedExperiment (2018)
	TreeTools (1)
	TREG (76)
	TReNA (3)
	trena (29)
	trendeval (1)
	Trendy (91)
	TRESS (94)
	triangle (1)
	tricycle (229)
	TrIdent (4)
	triebeard (3)
	triform (43)
	trigger (124)
	trimcluster (0)
	trio (155)
	tripack (0)
	triplex (122)
	tripr (76)
	tRNA (138)
	tRNAdbImport (120)
	tRNAscanImport (98)
	TRONCO (116)
	trtf (0)
	truncdist (0)
	truncnorm (3)
	truncreg (0)
	trust (0)
	tryCatchLog (1)
	TSAR (60)
	tsbox (1)
	TSCAN (639)
	tscR (15)
	tseries (9)
	tseriesChaos (0)
	tsfeatures (1)
	tsibble (1)
	tsibbledata (0)
	tsModel (0)
	tsna (0)
	tsne (1)
	tsoutliers (2)
	TSP (14)
	tspair (48)
	TSRchitect (21)
	TSSi (38)
	tsvio (1)
	ttdo (0)
	ttgsea (84)
	TTMap (89)
	TTR (5)
	ttservice (1)
	tufte (0)
	tune (14)
	tuneR (0)
	tuneRanger (1)
	TurboNorm (119)
	turner (1)
	Turnover.cells.pSILAC.TMT (1)
	TVTB (101)
	twang (2)
	twangContinuous (0)
	tweeDEseq (168)
	tweedie (0)
	tweenr (33)
	twilight (142)
	twoddpcr (90)
	TwoSampleMR (1)
	twosamples (1)
	txcutr (75)
	TxDb.Hsapiens.UCSC.hg19.knownGene (6)
	TxDb.Hsapiens.UCSC.hg38.knownGene (1)
	TxDb.Mmusculus.UCSC.mm10.ensGene (0)
	TxDb.Mmusculus.UCSC.mm10.knownGene (6)
	TxDb.Mmusculus.UCSC.mm9.knownGene (0)
	txdbmaker (2991)
	tximeta (1017)
	tximport (3407)
	tximportDat (0)
	tximportData (3)
	TxRegInfra (14)
	txtq (0)
	TypeInfo (94)
	tzdb (33)

U

V

	V.PhyloMaker2 (0)
	V8 (86)
	VAExprs (73)
	validate (1)
	valr (1)
	VAM (1)
	VanillaICE (251)
	vaplot (0)
	vapour (0)
	VarCon (75)
	variables (0)
	variancePartition (965)
	VariantAnnotation (11724)
	variantannotation (1)
	VariantExperiment (72)
	VariantFiltering (133)
	VariantTools (175)
	VariantWarehouseBMS (0)
	varImp (0)
	vars (1)
	vasp (6)
	VaSP (89)
	vaultr (1)
	vbmp (143)
	VBsparsePCA (0)
	vcd (4)
	VCFArray (93)
	vcfR (1)

	vcr (0)
	vctrs (157)
	vdbR (0)
	vdiffr (1)
	VDJdive (81)
	Vega (35)
	VegaMC (111)
	vegan (33)
	vegawidget (0)
	velociraptor (166)
	velocyto.R (0)
	veloviz (74)
	vembedr (0)
	vendormetadatahelpers (0)
	venn (9)
	VennDetail (287)
	VennDiagram (1)
	venneuler (1)
	VERSO (77)
	vetiver (1)
	VGAM (15)
	VGAMextra (0)
	vhydeg (0)
	VIBER (0)
	vidger (146)
	VIM (1)
	vimp (1)
	VineCopula (0)

	vioplot (1)
	vip (1)
	viper (738)
	vipor (15)
	viridis (209)
	viridisLite (44)
	viridislite (0)
	virtualArray (12)
	visdat (1)
	ViSEAGO (140)
	VisiumIO (59)
	visiumStitched (7)
	visNetwork (3)
	visOmopResults (1)
	visR (2)
	vissE (132)
	vistime (11)
	vitae (0)
	Voyager (188)
	vpc (0)
	VplotR (89)
	vroom (96)
	vscDebugger (1)
	vsclust (78)
	vsn (5081)
	vtable (1)
	vtpnet (123)
	vulcan (96)

W

	WA43966.shareR.3043877 (1)
	waddR (73)
	waffle (1)
	waiter (10)
	wakefield (0)
	waldo (177)
	wallace (1)
	warp (15)
	wateRmelon (836)
	wavClusteR (106)
	waved (1)
	waveslim (1)
	waveTiling (41)
	wdm (0)
	wdman (2)
	weaver (119)
	webbioc (125)
	webchem (1)
	webdriver (0)
	webfakes (0)
	WebGestaltR (1)
	webmockr (0)
	webp (1)
	webshot (21)

	webshot2 (2)
	websocket (20)
	webutils (2)
	WeightIt (3)
	weights (3)
	WeightSVM (0)
	weitrix (85)
	WES.1KG.WUGSC (1)
	wesanderson (1)
	WGCNA (13)
	WGScan (0)
	WGSmapp (1)
	whereami (0)
	whisker (20)
	whitening (0)
	whoami (1)
	widgetframe (1)
	widgetInvoke (5)
	widgetTools (1355)
	widgettools (1)
	wiggleplotr (170)
	WikidataQueryServiceR (0)
	WikidataR (0)
	WikipediR (4)

	wikitaxa (0)
	wildmeta (0)
	winboxr (1)
	withr (264)
	wk (35)
	wmtsa (1)
	worcs (1)
	wordcloud (0)
	wordcloud2 (0)
	workflowr (1)
	workflows (12)
	workflowsets (13)
	WorldFlora (1)
	worrms (2)
	wpm (87)
	wppi (61)
	wrapr (1)
	Wrench (1617)
	writexl (35)
	WriteXLS (4)
	wrMisc (1)
	WRS2 (2)

X

Y

	y2hStat (3)
	yaImpute (1)
	yaml (279)
	yamss (100)

	YAPSA (119)
	yaqcaffy (44)
	yardstick (20)
	yarn (135)

	ylab.utils (0)
	ymlthis (0)
	yspec (1)
	yulab.utils (65)

Z

	zCompositions (10)
	zeallot (1)
	zellkonverter (1440)
	zelusutils (1)
	zen4R (0)
	zenith (130)

	zFPKM (145)
	zinbwave (887)
	zingeR (1)
	zip (194)
	Ziploc (1)
	zitools (23)

	zli (1)
	zlibbioc (54434)
	zoo (27)
	ZygosityPredictor (70)

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