genefu
This is the development version of genefu; for the stable release version, see genefu.
Computation of Gene Expression-Based Signatures in Breast Cancer
Bioconductor version: Development (3.23)
This package contains functions implementing various tasks usually required by gene expression analysis, especially in breast cancer studies: gene mapping between different microarray platforms, identification of molecular subtypes, implementation of published gene signatures, gene selection, and survival analysis.
Author: Deena M.A. Gendoo [aut], Natchar Ratanasirigulchai [aut], Markus S. Schroeder [aut], Laia Pare [aut], Joel S Parker [aut], Aleix Prat [aut], Nikta Feizi [ctb], Christopher Eeles [ctb], Jermiah Joseph [ctb], Benjamin Haibe-Kains [aut, cre]
Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains at utoronto.ca>
citation("genefu")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("genefu")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Classification, Clustering, DifferentialExpression, GeneExpression, Software, Visualization |
| Version | 2.41.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (14.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.1), survcomp, biomaRt, iC10, AIMS |
| Imports | amap, impute, mclust, limma, graphics, stats, utils, iC10TrainingData |
| System Requirements | |
| URL | http://www.pmgenomics.ca/bhklab/software/genefu |
See More
| Suggests | GeneMeta, breastCancerVDX, breastCancerMAINZ, breastCancerTRANSBIG, breastCancerUPP, breastCancerUNT, breastCancerNKI, rmeta, Biobase, xtable, knitr, caret, survival, BiocStyle, magick, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/genefu |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/genefu |
| Package Short Url | https://bioconductor.org/packages/genefu/ |
| Package Downloads Report | Download Stats |