annaffy
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see annaffy.
Annotation tools for Affymetrix biological metadata
Bioconductor version: 3.9
Functions for handling data from Bioconductor Affymetrix annotation data packages. Produces compact HTML and text reports including experimental data and URL links to many online databases. Allows searching biological metadata using various criteria.
Author: Colin A. Smith <colin at colinsmith.org>
Maintainer: Colin A. Smith <colin at colinsmith.org>
citation("annaffy")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("annaffy")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("annaffy")| annaffy Primer | R Script | |
| Reference Manual |
Details
| biocViews | Annotation, GO, Microarray, OneChannel, Pathways, ReportWriting, Software |
| Version | 1.56.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19 years) |
| License | LGPL |
| Depends | R (>= 2.5.0), methods, Biobase, GO.db, KEGG.db |
| Imports | AnnotationDbi(>= 0.1.15), DBI |
| System Requirements | |
| URL |
See More
| Suggests | hgu95av2.db, multtest, tcltk |
| Linking To | |
| Enhances | |
| Depends On Me | a4Base, a4Reporting, PGSEA, webbioc |
| Imports Me | |
| Suggests Me | AffyExpress, ArrayTools, BiocCaseStudies |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | annaffy_1.56.0.tar.gz |
| Windows Binary | annaffy_1.56.0.zip |
| Mac OS X 10.11 (El Capitan) | annaffy_1.56.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/annaffy |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/annaffy |
| Bioc Package Browser | https://code.bioconductor.org/browse/annaffy/ |
| Package Short Url | https://bioconductor.org/packages/annaffy/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |