PGSEA
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see PGSEA.
Parametric Gene Set Enrichment Analysis
Bioconductor version: 3.9
Parametric Analysis of Gene Set Enrichment
Author: Kyle Furge <kyle.furge at vai.org> and Karl Dykema <karl.dykema at vai.org>
Maintainer: Karl Dykema <karl.dykema at vai.org>
Citation (from within R, enter
citation("PGSEA")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PGSEA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PGSEA")| HOWTO: PGSEA | R Script | |
| HOWTO: PGSEA Example Workflow | R Script | |
| Reference Manual |
Details
| biocViews | Microarray, Software |
| Version | 1.58.0 |
| In Bioconductor since | BioC 2.0 (R-2.5) (17 years) |
| License | GPL-2 |
| Depends | R (>= 2.10), GO.db, KEGG.db, AnnotationDbi, annaffy, methods, Biobase(>= 2.5.5) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | GSEABase, GEOquery, org.Hs.eg.db, hgu95av2.db, limma |
| Linking To | |
| Enhances | |
| Depends On Me | GeneExpressionSignature |
| Imports Me | |
| Suggests Me | gskb |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | PGSEA_1.58.0.tar.gz |
| Windows Binary | PGSEA_1.58.0.zip |
| Mac OS X 10.11 (El Capitan) | PGSEA_1.58.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/PGSEA |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/PGSEA |
| Bioc Package Browser | https://code.bioconductor.org/browse/PGSEA/ |
| Package Short Url | https://bioconductor.org/packages/PGSEA/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |