AffyExpress
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see AffyExpress.
Affymetrix Quality Assessment and Analysis Tool
Bioconductor version: 3.9
The purpose of this package is to provide a comprehensive and easy-to-use tool for quality assessment and to identify differentially expressed genes in the Affymetrix gene expression data.
Author: Xiwei Wu <xwu at coh.org>, Xuejun Arthur Li <xueli at coh.org>
Maintainer: Xuejun Arthur Li <xueli at coh.org>
citation("AffyExpress")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("AffyExpress")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AffyExpress")| 1. Primer | R Script | |
| Reference Manual |
Details
| biocViews | Annotation, DifferentialExpression, Microarray, OneChannel, Preprocessing, QualityControl, ReportWriting, Software, Visualization |
| Version | 1.50.0 |
| In Bioconductor since | BioC 2.1 (R-2.6) (16.5 years) |
| License | LGPL |
| Depends | R (>= 2.10), affy(>= 1.23.4), limma |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | simpleaffy, R2HTML, affyPLM, hgu95av2cdf, hgu95av2, test3cdf, genefilter, estrogen, annaffy, gcrma |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | AffyExpress_1.50.0.tar.gz |
| Windows Binary | AffyExpress_1.50.0.zip |
| Mac OS X 10.11 (El Capitan) | AffyExpress_1.50.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/AffyExpress |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/AffyExpress |
| Bioc Package Browser | https://code.bioconductor.org/browse/AffyExpress/ |
| Package Short Url | https://bioconductor.org/packages/AffyExpress/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |