DelayedArray
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see DelayedArray.
A unified framework for working transparently with on-disk and in-memory array-like datasets
Bioconductor version: 3.10
Wrapping an array-like object (typically an on-disk object) in a DelayedArray object allows one to perform common array operations on it without loading the object in memory. In order to reduce memory usage and optimize performance, operations on the object are either delayed or executed using a block processing mechanism. Note that this also works on in-memory array-like objects like DataFrame objects (typically with Rle columns), Matrix objects, and ordinary arrays and data frames.
Author: Hervé Pagès <hpages at fredhutch.org>, with contributions from Peter Hickey <peter.hickey at gmail.com> and Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
Maintainer: Hervé Pagès <hpages at fredhutch.org>
citation("DelayedArray")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DelayedArray")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DelayedArray")| Implementing A DelayedArray Backend | HTML | |
| Working with large arrays in R | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation, DataRepresentation, GenomeAnnotation, Infrastructure, Software |
| Version | 0.12.3 |
| In Bioconductor since | BioC 3.5 (R-3.4) (7 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.4), methods, stats4, matrixStats, BiocGenerics(>= 0.31.5), S4Vectors(>= 0.24.4), IRanges(>= 2.17.3), BiocParallel |
| Imports | stats, Matrix |
| System Requirements | |
| URL |
See More
| Suggests | HDF5Array, genefilter, SummarizedExperiment, airway, pryr, DelayedMatrixStats, knitr, BiocStyle, RUnit |
| Linking To | S4Vectors |
| Enhances | |
| Depends On Me | DelayedDataFrame, DelayedMatrixStats, GDSArray, HDF5Array, restfulSE, rhdf5client, singleCellTK, SummarizedExperiment, VCFArray |
| Imports Me | batchelor, beachmat, BiocSingular, bsseq, CAGEr, celaref, ChIPpeakAnno, clusterExperiment, DEScan2, DSS, ELMER, GenoGAM, gramm4R, hipathia, LoomExperiment, mbkmeans, methrix, minfi, netSmooth, PCAtools, RTCGAToolbox, scater, scDblFinder, scMerge, scmeth, scran, signatureSearch, SingleR, VariantExperiment |
| Suggests Me | BiocGenerics, gwascat, iSEE, MAST, S4Vectors, SQLDataFrame |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | DelayedArray_0.12.3.tar.gz |
| Windows Binary | DelayedArray_0.12.3.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | DelayedArray_0.12.3.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/DelayedArray |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DelayedArray |
| Bioc Package Browser | https://code.bioconductor.org/browse/DelayedArray/ |
| Package Short Url | https://bioconductor.org/packages/DelayedArray/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |