gramm4R
This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see gramm4R.
Generalized correlation analysis and model construction strategy for metabolome and microbiome
Bioconductor version: 3.10
Generalized Correlation Analysis for Metabolome and Microbiome (GRaMM), for inter-correlation pairs discovery among metabolome and microbiome.
Author: Mengci Li, Dandan Liang, Tianlu Chen and Wei Jia
Maintainer: Tianlu Chen <chentianlu at sjtu.edu.cn>
citation("gramm4R")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("gramm4R")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gramm4R")| gramm4R | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GraphAndNetwork, Microbiome, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (4.5 years) |
| License | GPL-2 |
| Depends | R (>= 3.6.0) |
| Imports | basicTrendline, investr, minerva, psych, grDevices, graphics, stats, DelayedArray, SummarizedExperiment, DMwR, phyloseq |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | gramm4R_1.0.0.tar.gz |
| Windows Binary | gramm4R_1.0.0.zip |
| Mac OS X 10.11 (El Capitan) | gramm4R_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/gramm4R |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/gramm4R |
| Bioc Package Browser | https://code.bioconductor.org/browse/gramm4R/ |
| Package Short Url | https://bioconductor.org/packages/gramm4R/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |