DelayedMatrixStats
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see DelayedMatrixStats.
Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects
Bioconductor version: 3.10
A port of the 'matrixStats' API for use with DelayedMatrix objects from the 'DelayedArray' package. High-performing functions operating on rows and columns of DelayedMatrix objects, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized.
Author: Peter Hickey <peter.hickey at gmail.com>
Maintainer: Peter Hickey <peter.hickey at gmail.com>
citation("DelayedMatrixStats")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DelayedMatrixStats")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DelayedMatrixStats")| Overview of DelayedMatrixStats | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataRepresentation, Infrastructure, Software |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | MIT + file LICENSE |
| Depends | DelayedArray(>= 0.11.1) |
| Imports | methods, matrixStats (>= 0.55.0), Matrix, S4Vectors(>= 0.17.5), IRanges, HDF5Array(>= 1.7.10), BiocParallel |
| System Requirements | |
| URL | https://github.com/PeteHaitch/DelayedMatrixStats |
| Bug Reports | https://github.com/PeteHaitch/DelayedMatrixStats/issues |
See More
| Suggests | testthat, knitr, rmarkdown, covr, BiocStyle, microbenchmark, profmem |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | batchelor, biscuiteer, bsseq, dmrseq, methrix, minfi, PCAtools, scater, scMerge, scran, SingleR |
| Suggests Me | DelayedArray, mbkmeans |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | DelayedMatrixStats_1.8.0.tar.gz |
| Windows Binary | DelayedMatrixStats_1.8.0.zip |
| Mac OS X 10.11 (El Capitan) | DelayedMatrixStats_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/DelayedMatrixStats |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DelayedMatrixStats |
| Bioc Package Browser | https://code.bioconductor.org/browse/DelayedMatrixStats/ |
| Package Short Url | https://bioconductor.org/packages/DelayedMatrixStats/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |