Bioconductor version: 2.7
Various wrapper functions that have been written to streamline the more common analyses that a core Biostatistician might see.
Author: James W. MacDonald
Maintainer: James W. MacDonald <jmacdon at med.umich.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("affycoretools")
To cite this package in a publication, start R and enter:
citation("affycoretools")
R Script | affycoretools biomaRt Integration | |
R Script | affycoretools Overview | |
Reference Manual |
biocViews | ReportWriting, Microarray, OneChannel, GeneExpression |
Depends | affy, Biobase, GO.db, KEGG.db |
Imports | biomaRt, limma, GOstats, annotate, annaffy, genefilter, gcrma, splines, xtable, AnnotationDbi |
Suggests | affydata, hgfocuscdf, rgl |
System Requirements | |
License | Artistic-2.0 |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | Agi4x44PreProcess, AgiMicroRna |
Version | 1.22.0 |
Since | Bioconductor 1.8 (R-2.3) |
Package Source | affycoretools_1.22.0.tar.gz |
Windows Binary | affycoretools_1.22.0.zip (32- & 64-bit) |
MacOS 10.5 (Leopard) binary | affycoretools_1.22.0.tgz |
Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
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