- Home
- Bioconductor 2.12
- Experiment Packages
- cheung2010
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cheung2010")
In most cases, you don't need to download the package archive at all.
cheung2010
|
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see cheung2010.
resources for genetics of gene expression based on Cheung et al 2010
Bioconductor version: 2.12
Data resources related to the PLoS Biology paper Polymorphic Cis- and Trans-Regulation of Human Gene Expression, including small-footprint smlSet support for 147 hgfocus arrays and corresponding HapMap genotypes at 1.3 million SNP; 0.0.22+ includes cheung_eset... from Leek et al RECOUNT myrna output
Author: Vince Carey <stvjc at channing.harvard.edu>
Maintainer: Vince Carey <stvjc at channing.harvard.edu>
Citation (from within R,
enter citation("cheung2010")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cheung2010")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cheung2010")
| arr2hap.pdf | ||
| R Script | cheungTrans: checking trans eQTL with hgfocus arrays | |
| Reference Manual |
Details
| biocViews | ExperimentData, GeneticVariability, RNAseqData |
| Version | 0.0.27 |
| License | Artistic 2.0 |
| Depends | R (>= 2.13.0), Biobase, GGtools, GenomicRanges, hgfocus.db |
| Imports | AnnotationDbi |
| LinkingTo | |
| Suggests | SNPlocs.Hsapiens.dbSNP.20100427, SNPlocs.Hsapiens.dbSNP.20101109 |
| SystemRequirements | |
| Enhances | parallel |
| URL | |
| Depends On Me | ggtut |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | cheung2010_0.0.27.tar.gz |
| Windows Binary | cheung2010_0.0.27.zip |
| Mac OS X 10.6 (Snow Leopard) | cheung2010_0.0.27.tgz |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/cheung2010/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
