To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GGtools")

In most cases, you don't need to download the package archive at all.

GGtools

This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see GGtools.

software and data for analyses in genetics of gene expression

Bioconductor version: 2.12

software and data for analyses in genetics of gene expression and/or DNA methylation

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("GGtools")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GGtools")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GGtools")

PDF	R Script	GGtools 2012: efficient tools for eQTL discovery
PDF		Reference Manual
Text		README
Text		NEWS

biocViews	GeneExpression, GeneticVariability, Genetics, SNP, Software
Version	4.8.0
In Bioconductor since	BioC 1.9 (R-2.4) (9.5 years)
License	Artistic-2.0
Depends	R (>= 2.14), stats4, GGBase(>= 3.19.7), IRanges, GenomicRanges, Rsamtools
Imports	methods, utils, stats, BiocGenerics, snpStats, ff, AnnotationDbi, Biobase, bit, VariantAnnotation
LinkingTo
Suggests	GGdata, illuminaHumanv1.db, SNPlocs.Hsapiens.dbSNP.20120608
SystemRequirements
Enhances	MatrixEQTL
URL
Depends On Me	ceu1kg, cgdv17, cheung2010, encoDnaseI, ggtut
Imports Me	ceuhm3
Suggests Me	hmyriB36, ind1KG
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	GGtools_4.8.0.tar.gz
Windows Binary	GGtools_4.8.0.zip
Mac OS X 10.6 (Snow Leopard)	GGtools_4.8.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/GGtools/tree/release-2.12
Package Short Url	http://bioconductor.org/packages/GGtools/
Package Downloads Report	Download Stats

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