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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SNPlocs.Hsapiens.dbSNP.20101109")
In most cases, you don't need to download the package archive at all.
SNPlocs.Hsapiens.dbSNP.20101109
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This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see SNPlocs.Hsapiens.dbSNP.20101109.
SNP locations for Homo sapiens (dbSNP Build 132)
Bioconductor version: 2.12
SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 132. The source data files used for this package were created by NCBI on 9 November 2010 and contain SNPs mapped to reference genome GRCh37. WARNING: Note that the GRCh37 genome is the same as the hg19 genome from UCSC except for the mitochondrion chromosome. Therefore, the SNPs in this package can be "injected" in BSgenome.Hsapiens.UCSC.hg19 but this injection will exclude chrM (i.e. nothing will be injected in that sequence).
Author: Herve Pages
Maintainer: H. Pages <hpages at fhcrc.org>
Citation (from within R,
enter citation("SNPlocs.Hsapiens.dbSNP.20101109")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SNPlocs.Hsapiens.dbSNP.20101109")
Documentation
| Reference Manual |
Details
| biocViews | AnnotationData, Genetics, Homo_sapiens |
| Version | 0.99.6 |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), IRanges, GenomicRanges |
| Imports | methods, IRanges, GenomicRanges |
| LinkingTo | |
| Suggests | Biostrings, BSgenome(>= 1.16.1), BSgenome.Hsapiens.UCSC.hg19 |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | ceu1kg, cheung2010, VariantAnnotation |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | SNPlocs.Hsapiens.dbSNP.20101109_0.99.6.tar.gz |
| Windows Binary | SNPlocs.Hsapiens.dbSNP.20101109_0.99.6.zip |
| Mac OS X 10.6 (Snow Leopard) | SNPlocs.Hsapiens.dbSNP.20101109_0.99.6.tgz |
| Package Short Url | http://bioconductor.org/packages/SNPlocs.Hsapiens.dbSNP.20101109/ |
| Package Downloads Report | Download Stats |
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