| Back to Long Tests report for BioC 3.20 |
This page was generated on 2024-12-21 23:55 -0500 (Sat, 21 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 10/32 | Hostname | OS / Arch | CHECK | |||||||
| biodbNcbi 1.10.0 (landing page) Pierrick Roger
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | ERROR | |||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | WARNINGS | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | WARNINGS | ||||||||
|
To the developers/maintainers of the biodbNcbi package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbNcbi |
| Version: 1.10.0 |
| Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.10.0.tar.gz |
| StartedAt: 2024-12-21 16:04:21 -0500 (Sat, 21 Dec 2024) |
| EndedAt: 2024-12-21 16:06:41 -0500 (Sat, 21 Dec 2024) |
| EllapsedTime: 139.6 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: biodbNcbi.Rcheck |
| Warnings: 1 |
biodbNcbi.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbNci)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbNcbi")
Loading required package: biodbNcbi
biodb.INFO [2024-12-21 16:05:07.390][biodb::testContext]
biodb.INFO [2024-12-21 16:05:07.393][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-21 16:05:07.394][biodb::testContext] Test context - CCDS long tests
biodb.INFO [2024-12-21 16:05:07.396][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-21 16:05:07.397][biodb::testContext]
biodb.INFO [2024-12-21 16:05:07.403][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-12-21 16:05:07.405][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-12-21 16:05:07.413][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-21 16:05:07.414][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-12-21 16:05:07.415][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-12-21 16:05:07.416][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.420][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-12-21 16:05:07.436][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-12-21 16:05:07.437][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.440][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-12-21 16:05:07.441][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-12-21 16:05:07.442][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.445][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-12-21 16:05:07.447][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-12-21 16:05:07.448][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-12-21 16:05:07.449][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.452][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-12-21 16:05:07.453][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-12-21 16:05:07.455][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-12-21 16:05:07.456][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.459][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-12-21 16:05:07.460][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-12-21 16:05:07.461][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.464][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-12-21 16:05:07.466][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-12-21 16:05:07.467][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-12-21 16:05:07.468][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.471][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-12-21 16:05:07.472][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-12-21 16:05:07.473][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.477][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-12-21 16:05:07.478][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-12-21 16:05:07.479][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-12-21 16:05:07.480][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.483][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-12-21 16:05:07.484][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-12-21 16:05:07.486][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-12-21 16:05:07.487][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-12-21 16:05:07.488][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-12-21 16:05:07.489][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-12-21 16:05:07.490][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.494][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-12-21 16:05:07.495][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-12-21 16:05:07.496][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.499][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-12-21 16:05:07.500][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-12-21 16:05:07.501][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.505][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-12-21 16:05:07.506][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-12-21 16:05:07.507][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.510][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-12-21 16:05:07.512][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-12-21 16:05:07.513][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.516][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-12-21 16:05:07.517][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-12-21 16:05:07.518][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.521][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-12-21 16:05:07.523][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-12-21 16:05:07.526][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-12-21 16:05:07.527][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.531][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-12-21 16:05:07.532][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-12-21 16:05:07.533][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-12-21 16:05:07.534][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.539][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-12-21 16:05:07.574][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:07.588][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-12-21 16:05:07.589][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:07.590][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-21 16:05:07.591][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:07.593][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-21 16:05:07.594][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:07.595][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-21 16:05:07.596][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-21 16:05:07.597][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-21 16:05:07.599][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:07.600][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-12-21 16:05:07.601][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-21 16:05:07.602][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:07.603][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:07.605][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-21 16:05:07.605][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-21 16:05:07.605][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-21 16:05:07.605][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-21 16:05:07.605][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-21 16:05:07.606][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-21 16:05:07.607][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:07.608][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:07.609][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-21 16:05:07.610][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:07.612][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:07.613][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-21 16:05:07.614][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:07.615][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-21 16:05:07.616][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-21 16:05:07.617][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:07.618][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:07.620][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-12-21 16:05:07.622][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:07.623][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-12-21 16:05:07.624][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:07.625][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-21 16:05:07.626][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:07.628][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-21 16:05:07.629][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:07.630][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-21 16:05:07.631][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-21 16:05:07.632][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-21 16:05:07.634][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:07.635][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-12-21 16:05:07.636][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-21 16:05:07.637][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:07.638][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:07.639][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-21 16:05:07.639][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-21 16:05:07.639][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-21 16:05:07.639][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-21 16:05:07.639][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-21 16:05:07.641][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-21 16:05:07.642][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:07.643][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:07.644][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-21 16:05:07.645][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:07.646][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:07.647][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-21 16:05:07.649][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:07.650][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-21 16:05:07.651][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-21 16:05:07.652][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:07.653][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:07.654][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-12-21 16:05:07.656][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:07.658][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-12-21 16:05:07.659][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:07.660][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-21 16:05:07.661][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:07.662][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-21 16:05:07.664][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:07.665][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-21 16:05:07.666][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-21 16:05:07.667][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-21 16:05:07.668][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:07.669][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-12-21 16:05:07.671][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-21 16:05:07.672][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:07.673][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:07.674][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:07.675][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-21 16:05:07.676][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:07.678][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:07.679][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-21 16:05:07.680][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:07.681][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:07.682][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-21 16:05:07.683][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:07.684][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-21 16:05:07.685][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-21 16:05:07.687][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:07.688][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:07.689][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-12-21 16:05:07.691][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:07.692][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-12-21 16:05:07.693][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:07.695][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-21 16:05:07.696][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:07.697][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-21 16:05:07.698][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:07.699][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-21 16:05:07.701][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-21 16:05:07.702][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-21 16:05:07.703][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:07.704][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-12-21 16:05:07.705][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-21 16:05:07.707][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:07.708][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:07.709][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:07.710][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-21 16:05:07.711][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:07.712][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:07.713][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-21 16:05:07.715][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:07.716][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:07.717][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-21 16:05:07.718][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:07.719][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-21 16:05:07.720][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-21 16:05:07.721][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:07.723][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:07.726][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-21 16:05:07.727][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.729][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:07.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:07.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.735][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:07.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:07.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.740][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:07.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:07.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.745][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:07.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:07.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.751][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:07.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:07.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.756][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:07.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:07.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.762][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:07.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:07.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.772][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:07.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:07.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:07.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:07.781][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.783][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:07.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:07.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.788][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:07.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:07.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.793][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:07.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:07.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.799][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:07.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:07.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.804][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:07.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:07.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.810][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:07.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:07.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.815][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:07.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:07.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.820][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:07.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:07.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:07.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:07.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:07.826][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-12-21 16:05:07.830][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-12-21 16:05:07.831][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-12-21 16:05:07.833][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-12-21 16:05:07.835][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-12-21 16:05:07.836][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-12-21 16:05:07.838][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-12-21 16:05:07.839][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-12-21 16:05:07.841][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-12-21 16:05:07.842][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-12-21 16:05:07.844][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-12-21 16:05:07.845][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-12-21 16:05:07.847][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-12-21 16:05:07.848][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-12-21 16:05:07.850][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-12-21 16:05:07.852][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-12-21 16:05:07.853][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-12-21 16:05:07.855][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-12-21 16:05:07.856][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-12-21 16:05:07.858][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-12-21 16:05:07.859][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-12-21 16:05:07.861][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-12-21 16:05:07.862][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-12-21 16:05:07.864][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-12-21 16:05:07.866][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-12-21 16:05:07.867][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-12-21 16:05:07.869][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-12-21 16:05:07.870][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-12-21 16:05:07.872][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-12-21 16:05:07.873][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-12-21 16:05:07.875][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-12-21 16:05:07.876][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-12-21 16:05:07.878][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-12-21 16:05:07.879][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-12-21 16:05:07.881][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-12-21 16:05:07.882][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-12-21 16:05:07.884][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-12-21 16:05:07.886][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-12-21 16:05:07.887][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-12-21 16:05:07.889][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-12-21 16:05:07.890][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-12-21 16:05:07.892][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-12-21 16:05:07.893][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-12-21 16:05:07.895][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-12-21 16:05:07.896][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-12-21 16:05:07.898][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-12-21 16:05:07.900][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-12-21 16:05:07.901][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-12-21 16:05:07.903][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-12-21 16:05:07.904][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-12-21 16:05:07.906][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-12-21 16:05:07.907][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-12-21 16:05:07.909][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-12-21 16:05:07.911][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-12-21 16:05:07.912][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-12-21 16:05:07.914][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-12-21 16:05:07.915][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-12-21 16:05:07.917][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-12-21 16:05:07.918][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-12-21 16:05:07.920][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-12-21 16:05:07.921][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-12-21 16:05:07.923][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-12-21 16:05:07.925][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-12-21 16:05:07.926][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-12-21 16:05:07.928][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-12-21 16:05:07.929][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-12-21 16:05:07.931][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-12-21 16:05:07.932][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-12-21 16:05:07.934][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-12-21 16:05:07.935][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-12-21 16:05:07.937][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-12-21 16:05:07.939][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-12-21 16:05:07.940][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-12-21 16:05:07.942][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-12-21 16:05:07.943][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-12-21 16:05:07.945][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-12-21 16:05:07.946][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-12-21 16:05:07.948][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-12-21 16:05:07.950][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-12-21 16:05:07.951][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-12-21 16:05:07.953][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-12-21 16:05:07.954][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-12-21 16:05:07.956][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-12-21 16:05:07.989][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-12-21 16:05:07.992][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-12-21 16:05:07.995][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-21 16:05:07.996][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:08.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:08.005][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:08.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:08.010][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:08.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:08.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:08.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:08.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:08.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:08.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:08.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:08.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:08.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:08.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:08.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:08.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:08.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:08.025][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:08.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:08.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:08.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:08.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:08.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:08.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:08.032][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:08.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:08.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:08.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:08.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:08.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:08.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:08.040][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:08.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:08.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:08.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:08.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:08.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:08.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:08.047][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:08.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:08.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:08.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:08.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:08.053][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:08.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:08.055][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:08.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:08.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:08.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:08.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:08.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:08.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:08.062][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:08.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:08.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:08.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:08.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:08.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:08.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:08.070][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:08.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:08.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:08.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:08.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:08.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:08.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:08.078][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:08.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:08.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:08.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:08.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:08.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:08.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:08.085][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:08.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:08.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:08.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:08.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:08.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:08.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:08.093][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:08.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:08.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:08.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:08.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:08.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:08.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:08.101][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:08.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:08.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:08.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:08.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:08.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:08.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:08.108][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:08.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:08.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:08.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:08.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:08.114][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:08.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:08.116][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:08.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:08.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:08.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:08.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:08.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:08.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:08.124][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:08.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:08.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:08.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:08.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:08.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:08.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:08.131][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:08.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:08.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:08.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:08.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:08.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:08.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:08.141][bdb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-12-21 16:05:08.151][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-12-21 16:05:08.153][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:08.154][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-12-21 16:05:08.155][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:08.156][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-21 16:05:08.157][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:08.159][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-21 16:05:08.160][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:08.161][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-21 16:05:08.162][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-12-21 16:05:08.163][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-21 16:05:08.165][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:08.166][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-12-21 16:05:08.167][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-21 16:05:08.168][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-12-21 16:05:08.168][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-12-21 16:05:08.169][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:08.171][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:08.172][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-12-21 16:05:08.173][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:08.174][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:08.175][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-21 16:05:08.176][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:08.177][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:08.178][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-21 16:05:08.180][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-12-21 16:05:08.180][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-12-21 16:05:08.181][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-21 16:05:08.182][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-21 16:05:08.183][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:08.184][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:08.185][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-12-21 16:05:08.187][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:08.189][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-12-21 16:05:08.190][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:08.191][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-21 16:05:08.192][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:08.193][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-21 16:05:08.195][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:08.196][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-21 16:05:08.197][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-21 16:05:08.198][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-21 16:05:08.199][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:08.200][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-12-21 16:05:08.202][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-21 16:05:08.203][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-12-21 16:05:08.203][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-12-21 16:05:08.203][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-12-21 16:05:08.203][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-12-21 16:05:08.203][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-12-21 16:05:08.203][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-12-21 16:05:08.204][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:08.205][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-21 16:05:08.207][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-12-21 16:05:08.233][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:08.234][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:08.236][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-21 16:05:08.237][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:08.238][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:08.239][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-21 16:05:08.240][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-21 16:05:08.240][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-12-21 16:05:08.242][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-21 16:05:08.243][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-21 16:05:08.244][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:08.245][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:08.246][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-12-21 16:05:08.248][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:08.250][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-12-21 16:05:08.251][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:08.252][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-21 16:05:08.253][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:08.254][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-21 16:05:08.255][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:08.257][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-21 16:05:08.258][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-21 16:05:08.259][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-21 16:05:08.260][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:08.261][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-12-21 16:05:08.262][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-21 16:05:08.264][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-12-21 16:05:08.264][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:08.264][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:08.264][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:08.264][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:08.264][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:08.264][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:08.264][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:08.264][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:08.264][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:08.264][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-12-21 16:05:08.264][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:08.264][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:08.264][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:08.265][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:08.266][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-21 16:05:08.266][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-21 16:05:08.266][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-21 16:05:08.268][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-12-21 16:05:08.269][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:08.270][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:08.271][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-21 16:05:08.272][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:08.273][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:08.274][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-21 16:05:08.276][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-21 16:05:08.276][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-12-21 16:05:08.276][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-12-21 16:05:08.277][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-21 16:05:08.278][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-21 16:05:08.279][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:08.280][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-12-21 16:05:08.282][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-12-21 16:05:08.284][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:08.285][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-12-21 16:05:08.286][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:08.287][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-21 16:05:08.288][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:08.289][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-21 16:05:08.291][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:08.292][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-21 16:05:08.293][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-21 16:05:08.294][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-21 16:05:08.295][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:08.296][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-12-21 16:05:08.298][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-21 16:05:08.299][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-12-21 16:05:08.299][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-12-21 16:05:08.300][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:08.301][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:08.302][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-12-21 16:05:08.303][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:08.305][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:08.306][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-21 16:05:08.307][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:08.308][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:08.309][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-21 16:05:08.310][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-21 16:05:08.310][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-12-21 16:05:08.310][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-12-21 16:05:08.311][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-21 16:05:08.313][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-21 16:05:08.314][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:08.315][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-12-21 16:05:08.320][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-12-21 16:05:08.322][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-12-21 16:05:08.324][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-12-21 16:05:08.326][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-12-21 16:05:08.327][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-12-21 16:05:08.329][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-12-21 16:05:08.349][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2024-12-21 16:05:08.350][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2024-12-21 16:05:08.354][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2024-12-21 16:05:08.358][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2024-12-21 16:05:08.361][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-21 16:05:08.362][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-21 16:05:08.364][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2024-12-21 16:05:08.365][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-21 16:05:08.367][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-21 16:05:08.368][bdb$getFactory()$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.INFO [2024-12-21 16:05:08.377][biodb::testThat]
biodb.INFO [2024-12-21 16:05:08.378][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-12-21 16:05:08.380][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:05:08.381][biodb::testThat]
biodb.TRACE[2024-12-21 16:05:08.386][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS12227.1-content.html".
biodb.DEBUG[2024-12-21 16:05:08.388][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-12-21 16:05:08.392][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-12-21 16:05:08.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:08.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:08.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:08.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:08.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:08.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:08.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:08.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:08.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:08.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.451][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:08.471][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:08.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.474][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.497][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:08.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:08.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.502][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:08.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:08.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.507][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:08.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:08.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:08.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:08.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:08.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:08.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:08.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:08.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:08.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:08.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:08.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:08.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:08.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:08.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:08.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:08.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:08.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:08.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:08.577][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS12227.1.
biodb.TRACE[2024-12-21 16:05:08.580][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:08.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:08.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.585][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:08.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:08.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.614][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:08.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:08.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.619][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:08.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:08.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.624][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:08.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:08.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.629][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:08.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:08.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:08.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:08.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.672][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:08.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:08.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:08.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:08.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:08.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:08.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:08.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:08.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:08.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:08.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:08.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:08.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:08.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:08.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.714][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:08.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:08.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.719][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:08.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:08.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.724][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:08.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:08.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:08.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:08.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:08.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:08.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:08.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:08.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.752][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:08.753][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:08.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.755][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:08.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:08.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.776][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:08.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:08.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.781][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:08.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:08.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.786][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:08.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:08.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.790][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:08.792][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:08.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.794][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.795][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:08.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:08.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.810][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:08.811][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:08.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.813][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.819][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:08.821][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:08.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.823][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.841][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS43240.1-content.html".
biodb.DEBUG[2024-12-21 16:05:08.871][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-12-21 16:05:08.873][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-12-21 16:05:08.875][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:08.876][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:08.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:08.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:08.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:08.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:08.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:08.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:08.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:08.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.922][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:08.924][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:08.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.926][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.927][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:08.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:08.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.933][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:08.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:08.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.937][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:08.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:08.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:08.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:08.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.947][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:08.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:08.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:08.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:08.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:08.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:08.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:08.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:08.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:08.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:08.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:08.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:08.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:08.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:08.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:08.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:08.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:08.981][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS43240.1.
biodb.TRACE[2024-12-21 16:05:08.999][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:09.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:09.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:09.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:09.004][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:09.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:09.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:09.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:09.009][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:09.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:09.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:09.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:09.014][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:09.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:09.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:09.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:09.018][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:09.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:09.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:09.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:09.023][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:09.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:09.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:09.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:09.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:09.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:09.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:09.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:09.039][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:09.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:09.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:09.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:09.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:09.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:09.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:09.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:09.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:09.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:09.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:09.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:09.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:09.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:09.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:09.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:09.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:09.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:09.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:09.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:09.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:09.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:09.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:09.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:09.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:09.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:09.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:09.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:09.084][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:09.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:09.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:09.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:09.089][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:09.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:09.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:09.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:09.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:09.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:09.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:09.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:09.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:09.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:09.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:09.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:09.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:09.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:09.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:09.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:09.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:09.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:09.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:09.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:09.132][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:09.133][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:09.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:09.136][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:09.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:09.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:09.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:09.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:09.153][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:09.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:09.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:09.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:09.158][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:09.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:09.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:09.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:09.162][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:09.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:09.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:09.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:09.167][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:09.168][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:09.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:09.171][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:09.172][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:09.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:09.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:09.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:09.186][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:09.187][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:09.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:09.189][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:09.195][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:09.197][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:09.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:09.199][ef$get] fields variable is a list.
biodb.INFO [2024-12-21 16:05:09.210][biodb::testThat]
biodb.INFO [2024-12-21 16:05:09.212][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-12-21 16:05:09.213][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:05:09.214][biodb::testThat]
biodb.DEBUG[2024-12-21 16:05:09.217][private$loadEntries] Creating entries from ids [2]: "CCDS12227.1, CCDS43240.1".
biodb.DEBUG[2024-12-21 16:05:09.223][conn$getEntryContent] Get NCBI CCDS entry content(s) for 2 id(s)...
biodb.TRACE[2024-12-21 16:05:09.229][cch$loadFileContent] Trying to load 2 files from cache: [2]: "CCDS12227.1, CCDS43240.1".
biodb.INFO [2024-12-21 16:05:09.230][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704" for "ncbi.ccds-c3bf0257a03be04fd46e362b99907704".
biodb.TRACE[2024-12-21 16:05:09.232][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-12-21 16:05:09.234][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-21 16:05:09.235][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-12-21 16:05:09.236][conn$getEntryContent] 2 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-12-21 16:05:09.237][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-21 16:05:09.239][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-21 16:05:09.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:09.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:09.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:09.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:09.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:09.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:09.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:09.264][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2024-12-21 16:05:09.282][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:05:09.283][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:05:09.285][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.TRACE[2024-12-21 16:05:10.616][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1).
biodb.DEBUG[2024-12-21 16:05:11.942][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-21 16:05:11.945][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.content"
biodb.TRACE[2024-12-21 16:05:11.960][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.request"
biodb.DEBUG[2024-12-21 16:05:11.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:11.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:11.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:11.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:11.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:11.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:11.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:11.994][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1".
biodb.DEBUG[2024-12-21 16:05:12.009][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:05:12.010][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:05:12.031][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1".
biodb.TRACE[2024-12-21 16:05:13.351][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1).
biodb.DEBUG[2024-12-21 16:05:14.700][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-21 16:05:14.703][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/a052eb5467fd4c16ef9a5120d12cce8e.content"
biodb.TRACE[2024-12-21 16:05:14.708][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/a052eb5467fd4c16ef9a5120d12cce8e.request"
biodb.TRACE[2024-12-21 16:05:14.711][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS12227.1.html, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html"
biodb.DEBUG[2024-12-21 16:05:14.715][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-21 16:05:14.717][self$createEntryFromContent] Creating NCBI CCDS entries from 2 content(s).
biodb.DEBUG[2024-12-21 16:05:14.718][self$createEntryFromContent] Parsing 2 NCBI CCDS entries.
biodb.DEBUG[2024-12-21 16:05:14.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:14.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:14.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:14.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:14.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:14.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:14.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:14.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:14.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:14.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:14.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:14.755][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:14.757][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:14.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:14.759][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:14.761][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:14.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:14.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:14.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:14.766][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:14.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:14.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:14.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:14.771][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:14.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:14.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:14.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:14.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:14.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:14.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:14.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:14.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:14.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:14.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:14.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:14.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:14.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:14.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:14.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:14.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:14.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:14.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:14.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:14.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:14.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:14.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:14.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:14.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:14.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:14.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:14.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:14.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:14.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:14.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:14.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:14.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:14.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:14.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:14.830][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:14.831][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:14.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:14.833][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:14.835][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:14.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:14.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:14.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:14.847][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:14.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:14.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:14.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:14.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:14.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:14.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:14.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:14.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:14.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:14.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:14.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:14.861][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:14.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:14.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:14.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:14.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:14.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:14.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:14.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:14.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:14.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:14.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:14.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:14.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:14.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:14.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:14.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:14.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:14.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:14.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:14.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:14.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:14.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:14.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:14.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:14.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:14.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:14.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:14.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:14.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:14.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:14.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:14.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:14.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:14.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:14.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:14.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:14.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:14.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:14.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:14.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:14.911][self$createEntryFromContent] Accession numbers: CCDS12227.1, CCDS43240.1.
biodb.TRACE[2024-12-21 16:05:14.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-21 16:05:14.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-21 16:05:14.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:14.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:14.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-21 16:05:14.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-21 16:05:14.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:14.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:14.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-21 16:05:14.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-21 16:05:14.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:14.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:14.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-21 16:05:14.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-21 16:05:14.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:14.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:14.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-21 16:05:14.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-21 16:05:14.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:14.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:14.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-21 16:05:14.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-21 16:05:14.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:14.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-21 16:05:14.957][biodb::testThat]
biodb.INFO [2024-12-21 16:05:14.958][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-12-21 16:05:14.960][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:05:14.961][biodb::testThat]
biodb.INFO [2024-12-21 16:05:14.970][biodb::testThat]
biodb.INFO [2024-12-21 16:05:14.971][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-12-21 16:05:14.972][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:05:14.973][biodb::testThat]
biodb.WARN [2024-12-21 16:05:14.997][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2024-12-21 16:05:15.015][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2024-12-21 16:05:15.027][biodb::testThat]
biodb.INFO [2024-12-21 16:05:15.029][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-12-21 16:05:15.030][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:05:15.031][biodb::testThat]
biodb.TRACE[2024-12-21 16:05:15.055][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:15.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:15.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:15.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:15.060][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:15.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:15.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:15.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:15.065][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:15.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:15.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:15.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:15.070][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:15.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:15.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:15.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:15.075][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:15.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:15.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:15.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:15.079][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:15.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:15.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:15.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:15.098][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:15.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:15.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:15.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:15.103][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:15.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:15.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:15.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:15.107][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:15.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:15.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:15.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:15.112][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:15.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:15.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:15.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:15.117][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:15.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:15.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:15.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:15.122][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:15.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:15.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:15.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-21 16:05:15.137][biodb::testThat]
biodb.INFO [2024-12-21 16:05:15.138][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-12-21 16:05:15.140][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:05:15.141][biodb::testThat]
biodb.INFO [2024-12-21 16:05:15.153][biodb::testThat]
biodb.INFO [2024-12-21 16:05:15.154][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-12-21 16:05:15.155][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:05:15.156][biodb::testThat]
biodb.INFO [2024-12-21 16:05:15.166][biodb::testThat]
biodb.INFO [2024-12-21 16:05:15.168][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-12-21 16:05:15.169][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:05:15.170][biodb::testThat]
biodb.DEBUG[2024-12-21 16:05:15.175][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2024-12-21 16:05:16.495][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1.
biodb.INFO [2024-12-21 16:05:17.837][biodb::testThat]
biodb.INFO [2024-12-21 16:05:17.839][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-12-21 16:05:17.840][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:05:17.841][biodb::testThat]
biodb.INFO [2024-12-21 16:05:17.849][bdb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-12-21 16:05:17.851][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2024-12-21 16:05:17.852][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2024-12-21 16:05:17.853][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-12-21 16:05:17.854][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:17.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:17.856][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:17.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:17.859][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:17.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-12-21 16:05:17.870][biodb::testContext]
biodb.INFO [2024-12-21 16:05:17.871][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-21 16:05:17.872][biodb::testContext] Test context - Gene long tests
biodb.INFO [2024-12-21 16:05:17.873][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-21 16:05:17.881][biodb::testContext]
biodb.INFO [2024-12-21 16:05:17.885][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-12-21 16:05:17.887][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-12-21 16:05:17.892][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-21 16:05:17.893][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-12-21 16:05:17.895][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-12-21 16:05:17.896][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:17.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:17.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:17.899][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-12-21 16:05:17.900][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-12-21 16:05:17.901][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:17.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:17.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:17.905][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-12-21 16:05:17.906][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-12-21 16:05:17.907][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:17.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:17.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:17.910][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-12-21 16:05:17.912][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-12-21 16:05:17.913][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-12-21 16:05:17.914][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:17.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:17.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:17.917][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-12-21 16:05:17.918][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-12-21 16:05:17.920][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-12-21 16:05:17.921][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:17.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:17.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:17.924][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-12-21 16:05:17.925][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-12-21 16:05:17.926][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:17.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:17.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:17.930][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-12-21 16:05:17.931][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-12-21 16:05:17.932][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-12-21 16:05:17.933][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:17.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:17.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:17.936][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-12-21 16:05:17.937][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-12-21 16:05:17.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:17.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:17.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:17.942][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-12-21 16:05:17.943][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-12-21 16:05:17.944][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-12-21 16:05:17.945][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:17.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:17.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:17.949][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-12-21 16:05:17.950][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-12-21 16:05:17.951][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-12-21 16:05:17.952][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-12-21 16:05:17.953][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-12-21 16:05:17.955][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-12-21 16:05:17.956][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:17.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:17.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:17.959][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-12-21 16:05:17.960][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-12-21 16:05:17.961][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:17.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:17.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:17.965][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-12-21 16:05:17.966][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-12-21 16:05:17.967][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:17.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:17.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:17.970][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-12-21 16:05:17.971][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-12-21 16:05:17.972][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:17.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:17.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:17.976][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-12-21 16:05:17.977][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-12-21 16:05:17.978][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:17.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:17.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:17.981][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-12-21 16:05:17.983][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-12-21 16:05:17.984][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:17.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:17.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:17.987][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-12-21 16:05:17.988][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-12-21 16:05:17.992][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-12-21 16:05:17.993][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:17.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:17.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:17.996][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-12-21 16:05:17.997][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-12-21 16:05:17.999][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-12-21 16:05:18.000][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.003][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-12-21 16:05:18.005][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:18.006][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-12-21 16:05:18.008][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.009][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-21 16:05:18.010][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.017][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-21 16:05:18.018][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:18.019][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-21 16:05:18.020][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-21 16:05:18.021][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-21 16:05:18.023][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.024][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-12-21 16:05:18.025][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-21 16:05:18.026][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:18.028][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.029][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-21 16:05:18.029][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-21 16:05:18.029][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-21 16:05:18.029][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-21 16:05:18.029][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-21 16:05:18.030][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-21 16:05:18.031][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:18.032][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:18.033][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-21 16:05:18.035][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:18.036][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:18.037][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-21 16:05:18.038][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:18.039][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-21 16:05:18.040][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-21 16:05:18.041][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:18.042][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:18.044][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-12-21 16:05:18.046][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:18.047][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-12-21 16:05:18.048][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.050][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-21 16:05:18.051][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.052][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-21 16:05:18.053][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:18.054][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-21 16:05:18.055][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-21 16:05:18.057][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-21 16:05:18.058][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.059][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-12-21 16:05:18.060][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-21 16:05:18.061][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:18.063][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.064][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-21 16:05:18.064][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-21 16:05:18.064][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-21 16:05:18.064][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-21 16:05:18.064][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-21 16:05:18.065][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-21 16:05:18.066][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:18.067][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:18.069][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-21 16:05:18.070][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:18.071][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:18.072][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-21 16:05:18.073][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:18.074][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-21 16:05:18.075][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-21 16:05:18.076][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:18.078][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:18.079][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-12-21 16:05:18.081][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.082][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-12-21 16:05:18.083][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.085][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-21 16:05:18.086][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.087][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-21 16:05:18.088][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:18.089][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-21 16:05:18.091][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-21 16:05:18.092][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-21 16:05:18.093][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:18.094][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-12-21 16:05:18.096][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-21 16:05:18.097][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:18.098][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.099][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:18.100][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-21 16:05:18.101][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:18.103][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:18.104][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-21 16:05:18.105][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:18.106][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:18.107][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-21 16:05:18.108][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:18.109][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-21 16:05:18.111][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-21 16:05:18.112][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:18.113][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:18.114][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-12-21 16:05:18.116][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.117][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-12-21 16:05:18.119][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.120][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-21 16:05:18.121][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.122][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-21 16:05:18.123][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:18.125][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-21 16:05:18.127][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-21 16:05:18.129][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-21 16:05:18.130][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:18.132][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-12-21 16:05:18.134][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-21 16:05:18.135][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:18.136][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.137][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:18.139][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-21 16:05:18.140][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:18.141][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:18.147][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-21 16:05:18.148][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:18.149][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:18.151][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-21 16:05:18.152][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:18.153][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-21 16:05:18.154][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-21 16:05:18.155][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:18.156][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:18.158][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-21 16:05:18.159][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.161][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.166][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.172][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.177][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.183][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.188][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.194][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.199][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.204][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.210][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.215][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.220][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.226][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.237][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.243][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.254][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-12-21 16:05:18.255][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-12-21 16:05:18.257][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-12-21 16:05:18.258][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-12-21 16:05:18.260][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-12-21 16:05:18.262][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-12-21 16:05:18.263][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-12-21 16:05:18.265][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-12-21 16:05:18.266][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-12-21 16:05:18.272][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-12-21 16:05:18.274][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-12-21 16:05:18.276][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-12-21 16:05:18.277][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-12-21 16:05:18.279][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-12-21 16:05:18.280][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-12-21 16:05:18.282][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-12-21 16:05:18.283][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-12-21 16:05:18.285][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-12-21 16:05:18.286][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-12-21 16:05:18.288][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-12-21 16:05:18.290][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-12-21 16:05:18.291][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-12-21 16:05:18.293][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-12-21 16:05:18.294][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-12-21 16:05:18.296][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-12-21 16:05:18.297][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-12-21 16:05:18.299][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-12-21 16:05:18.301][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-12-21 16:05:18.302][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-12-21 16:05:18.304][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-12-21 16:05:18.305][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-12-21 16:05:18.307][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-12-21 16:05:18.308][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-12-21 16:05:18.310][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-12-21 16:05:18.312][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-12-21 16:05:18.313][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-12-21 16:05:18.315][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-12-21 16:05:18.316][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-12-21 16:05:18.318][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-12-21 16:05:18.319][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-12-21 16:05:18.321][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-12-21 16:05:18.323][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-12-21 16:05:18.324][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-12-21 16:05:18.326][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-12-21 16:05:18.327][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-12-21 16:05:18.329][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-12-21 16:05:18.330][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-12-21 16:05:18.332][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-12-21 16:05:18.334][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-12-21 16:05:18.335][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-12-21 16:05:18.337][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-12-21 16:05:18.338][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-12-21 16:05:18.340][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-12-21 16:05:18.341][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-12-21 16:05:18.343][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-12-21 16:05:18.344][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-12-21 16:05:18.346][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-12-21 16:05:18.348][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-12-21 16:05:18.349][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-12-21 16:05:18.351][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-12-21 16:05:18.352][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-12-21 16:05:18.354][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-12-21 16:05:18.355][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-12-21 16:05:18.357][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-12-21 16:05:18.358][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-12-21 16:05:18.360][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-12-21 16:05:18.362][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-12-21 16:05:18.363][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-12-21 16:05:18.365][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-12-21 16:05:18.366][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-12-21 16:05:18.368][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-12-21 16:05:18.369][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-12-21 16:05:18.371][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-12-21 16:05:18.373][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-12-21 16:05:18.374][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-12-21 16:05:18.376][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-12-21 16:05:18.377][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-12-21 16:05:18.379][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-12-21 16:05:18.380][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-12-21 16:05:18.382][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-12-21 16:05:18.389][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-12-21 16:05:18.391][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-12-21 16:05:18.392][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-12-21 16:05:18.394][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-12-21 16:05:18.396][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-12-21 16:05:18.397][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-21 16:05:18.398][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.400][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.403][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:18.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:18.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.410][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:18.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:18.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.417][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:18.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:18.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.425][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:18.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:18.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.432][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:18.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:18.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.440][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:18.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:18.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.447][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:18.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:18.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:18.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:18.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.462][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:18.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:18.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.470][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:18.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:18.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.477][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:18.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:18.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.485][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:18.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:18.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.492][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:18.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:18.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.500][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:18.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:18.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.507][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:18.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:18.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.520][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:18.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:18.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:18.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:18.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:18.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:18.537][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-12-21 16:05:18.547][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-12-21 16:05:18.549][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.551][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-12-21 16:05:18.552][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.553][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-21 16:05:18.554][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.555][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-21 16:05:18.557][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.558][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-21 16:05:18.559][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-12-21 16:05:18.560][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-21 16:05:18.561][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.562][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-12-21 16:05:18.564][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-21 16:05:18.565][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-12-21 16:05:18.565][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-12-21 16:05:18.566][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:18.567][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:18.568][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-12-21 16:05:18.570][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:18.571][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:18.572][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-21 16:05:18.573][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:18.574][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:18.575][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-21 16:05:18.576][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-12-21 16:05:18.576][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-12-21 16:05:18.578][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-21 16:05:18.579][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-21 16:05:18.580][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.581][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:18.582][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-12-21 16:05:18.584][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.586][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-12-21 16:05:18.587][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.588][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-21 16:05:18.589][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.590][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-21 16:05:18.592][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.593][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-21 16:05:18.594][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-21 16:05:18.595][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-21 16:05:18.596][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.597][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-12-21 16:05:18.599][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-21 16:05:18.600][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-12-21 16:05:18.600][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-12-21 16:05:18.600][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-12-21 16:05:18.600][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-12-21 16:05:18.600][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-12-21 16:05:18.600][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-12-21 16:05:18.601][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:18.602][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-21 16:05:18.603][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-12-21 16:05:18.604][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:18.606][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:18.607][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-21 16:05:18.608][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:18.609][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:18.610][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-21 16:05:18.611][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-21 16:05:18.611][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-12-21 16:05:18.612][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-21 16:05:18.613][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-21 16:05:18.615][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.616][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:18.617][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-12-21 16:05:18.619][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:18.620][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-12-21 16:05:18.622][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.623][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-21 16:05:18.624][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.625][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-21 16:05:18.626][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.628][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-21 16:05:18.629][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-21 16:05:18.635][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-21 16:05:18.637][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.638][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-12-21 16:05:18.639][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-21 16:05:18.640][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-12-21 16:05:18.640][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:18.640][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:18.640][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:18.640][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:18.640][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:18.640][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:18.640][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:18.640][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:18.640][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:18.640][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-12-21 16:05:18.640][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:18.640][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:18.640][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:18.641][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:18.643][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-21 16:05:18.643][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-21 16:05:18.643][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-21 16:05:18.644][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-12-21 16:05:18.645][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:18.646][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:18.647][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-21 16:05:18.648][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:18.649][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:18.650][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-21 16:05:18.652][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-21 16:05:18.652][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-12-21 16:05:18.652][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-12-21 16:05:18.653][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-21 16:05:18.654][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-21 16:05:18.655][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.656][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-12-21 16:05:18.658][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-12-21 16:05:18.660][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.661][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-12-21 16:05:18.662][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.663][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-21 16:05:18.664][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.666][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-21 16:05:18.667][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.668][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-21 16:05:18.669][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-21 16:05:18.670][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-21 16:05:18.672][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.673][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-12-21 16:05:18.674][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-21 16:05:18.675][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-12-21 16:05:18.675][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-12-21 16:05:18.676][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:18.677][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:18.679][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-12-21 16:05:18.680][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:18.681][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:18.682][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-21 16:05:18.683][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:18.684][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:18.685][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-21 16:05:18.687][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-21 16:05:18.687][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-12-21 16:05:18.687][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-12-21 16:05:18.688][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-21 16:05:18.689][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-21 16:05:18.690][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:18.691][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-12-21 16:05:18.693][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-12-21 16:05:18.694][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-12-21 16:05:18.696][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-12-21 16:05:18.698][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-12-21 16:05:18.699][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-12-21 16:05:18.701][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-12-21 16:05:18.708][super$initialize] Initialize connector ncbi.gene.
biodb.DEBUG[2024-12-21 16:05:18.709][super$initialize] Register connector ncbi.gene with the request scheduler
biodb.DEBUG[2024-12-21 16:05:18.711][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.gene.
biodb.DEBUG[2024-12-21 16:05:18.713][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2024-12-21 16:05:18.714][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-21 16:05:18.715][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-21 16:05:18.717][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2024-12-21 16:05:18.718][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-21 16:05:18.720][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-21 16:05:18.785][biodb$getFactory()$createConn] Creating new connector ncbi.gene for database class ncbi.gene .
biodb.INFO [2024-12-21 16:05:18.791][biodb::testThat]
biodb.INFO [2024-12-21 16:05:18.793][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-12-21 16:05:18.794][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:05:18.795][biodb::testThat]
biodb.TRACE[2024-12-21 16:05:18.807][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-2833-content.xml".
biodb.DEBUG[2024-12-21 16:05:18.809][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-12-21 16:05:18.812][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-12-21 16:05:18.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:18.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:18.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:18.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:18.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:18.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:18.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:18.839][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:18.840][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:18.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:18.843][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:18.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:18.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:18.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:18.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:18.850][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:18.851][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:18.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:18.853][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:18.856][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:18.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:18.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:18.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:18.860][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:18.862][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:18.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:18.864][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:18.866][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:18.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:18.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:18.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:18.871][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:18.879][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:18.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:18.881][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:18.883][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:18.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:18.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:18.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:18.888][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:18.889][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:18.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:18.892][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:18.894][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:18.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:18.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:18.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:18.899][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:18.900][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:18.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:18.902][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:18.906][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:18.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:18.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:18.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:18.915][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:18.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:18.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:18.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:18.920][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:18.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:18.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:18.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:18.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:18.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:18.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:18.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:18.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:18.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:18.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:18.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:18.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:18.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:18.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:18.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:18.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:18.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:18.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:18.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:18.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:18.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:18.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:18.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:18.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:18.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:18.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:18.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:18.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:18.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:18.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:18.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:18.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:18.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:18.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:18.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:18.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:18.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:18.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:18.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:18.968][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2833.
biodb.TRACE[2024-12-21 16:05:18.971][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:18.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:18.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:18.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:18.976][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:18.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:18.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:18.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:18.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:18.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:18.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:18.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:18.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:18.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:18.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:18.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:19.024][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:19.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:19.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:19.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:19.030][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-12-21 16:05:19.056][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2024-12-21 16:05:19.057][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2024-12-21 16:05:19.059][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2024-12-21 16:05:19.074][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-12-21 16:05:19.075][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-21 16:05:19.077][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-12-21 16:05:19.088][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-21 16:05:19.089][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-21 16:05:19.091][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-12-21 16:05:19.092][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-21 16:05:19.093][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-12-21 16:05:19.094][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-21 16:05:19.096][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-21 16:05:19.114][self$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.DEBUG[2024-12-21 16:05:19.115][private$loadEntries] Creating entries from ids [1]: "CCDS14416.1".
biodb.DEBUG[2024-12-21 16:05:19.117][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-21 16:05:19.120][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14416.1".
biodb.TRACE[2024-12-21 16:05:19.122][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-21 16:05:19.123][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-21 16:05:19.125][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-12-21 16:05:19.127][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-12-21 16:05:19.129][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-21 16:05:19.130][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-21 16:05:19.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:19.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:19.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:19.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:19.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:19.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:19.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:19.148][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1".
biodb.DEBUG[2024-12-21 16:05:19.151][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:05:19.152][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:05:19.154][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1".
biodb.TRACE[2024-12-21 16:05:20.391][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1).
biodb.DEBUG[2024-12-21 16:05:21.479][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-21 16:05:21.482][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/cb67b3a5b745c7932ff9adec9d1972cf.content"
biodb.TRACE[2024-12-21 16:05:21.487][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/cb67b3a5b745c7932ff9adec9d1972cf.request"
biodb.TRACE[2024-12-21 16:05:21.490][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14416.1.html"
biodb.DEBUG[2024-12-21 16:05:21.493][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-21 16:05:21.495][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-12-21 16:05:21.496][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-12-21 16:05:21.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:21.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:21.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:21.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:21.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:21.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:21.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:21.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:21.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:21.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.553][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:21.555][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:21.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.557][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.559][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:21.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:21.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:21.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:21.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.569][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:21.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:21.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:21.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:21.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:21.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:21.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:21.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:21.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:21.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:21.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:21.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:21.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:21.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:21.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:21.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:21.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:21.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:21.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:21.612][self$createEntryFromContent] Accession numbers: CCDS14416.1.
biodb.TRACE[2024-12-21 16:05:21.613][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:21.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:21.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.618][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:21.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:21.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.623][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:21.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:21.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.628][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:21.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:21.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.633][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:21.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:21.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.637][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:21.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:21.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.642][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:21.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:21.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:21.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:21.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.664][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:21.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:21.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:21.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:21.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:21.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:21.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:21.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:21.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:21.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:21.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:21.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:21.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:21.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:21.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.704][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:21.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:21.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.709][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:21.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:21.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.714][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:21.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:21.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:21.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:21.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:21.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:21.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:21.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:21.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.741][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:21.742][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:21.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.744][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:21.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:21.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.760][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:21.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:21.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.765][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:21.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:21.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.775][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:21.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:21.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.780][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:21.782][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:21.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.784][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.785][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:21.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:21.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.799][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:21.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:21.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.804][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:21.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:21.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.809][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:21.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:21.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.813][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:21.815][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:21.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.817][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.818][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:21.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:21.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.832][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:21.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:21.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.837][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:21.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:21.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.842][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:21.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:21.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.847][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:21.848][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:21.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.851][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.852][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:21.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:21.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.866][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:21.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:21.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.871][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:21.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:21.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.876][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:21.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:21.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.881][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:21.882][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:21.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.889][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.891][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:21.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:21.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.905][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:21.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:21.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.910][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:21.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:21.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.915][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:21.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:21.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.919][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:21.921][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:21.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.923][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.924][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:21.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:21.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.938][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:21.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:21.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.943][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:21.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:21.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.948][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:21.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:21.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.953][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:21.954][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:21.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.956][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.957][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:21.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:21.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.971][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:21.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:21.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.976][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:21.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:21.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.981][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:21.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:21.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.986][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:21.987][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:21.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.989][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:21.990][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:21.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:21.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:21.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.010][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:22.012][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:22.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.014][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.020][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:22.021][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:22.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.024][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.030][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:22.031][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:22.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.033][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.039][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:22.041][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:22.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.043][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.049][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:22.050][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:22.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.052][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.059][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:22.060][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:22.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.062][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.068][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:22.069][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:22.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.072][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.078][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:22.079][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:22.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.081][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.098][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3002-content.xml".
biodb.DEBUG[2024-12-21 16:05:22.099][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-12-21 16:05:22.101][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-12-21 16:05:22.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:22.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:22.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:22.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:22.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:22.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:22.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:22.128][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:22.130][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:22.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.132][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:22.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:22.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.139][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:22.140][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:22.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.148][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.150][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:22.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:22.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.156][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:22.157][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:22.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.159][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.162][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:22.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:22.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.166][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:22.168][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:22.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.170][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.172][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:22.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:22.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.177][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:22.178][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:22.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.181][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.183][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:22.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:22.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.188][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:22.189][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:22.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.192][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.195][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:22.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:22.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.203][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:22.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:22.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.208][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:22.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:22.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:22.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:22.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:22.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:22.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.222][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:22.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:22.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:22.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:22.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:22.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:22.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:22.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:22.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:22.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:22.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:22.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:22.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:22.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:22.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:22.256][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3002.
biodb.TRACE[2024-12-21 16:05:22.259][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:22.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:22.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.264][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:22.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:22.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.274][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:22.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:22.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.279][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:22.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:22.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:22.284][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:22.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:22.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:22.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:22.288][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-12-21 16:05:22.290][private$loadEntries] Creating entries from ids [1]: "CCDS9633.1".
biodb.DEBUG[2024-12-21 16:05:22.329][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-21 16:05:22.349][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS9633.1".
biodb.TRACE[2024-12-21 16:05:22.351][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-21 16:05:22.353][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-21 16:05:22.354][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-12-21 16:05:22.355][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-12-21 16:05:22.356][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-21 16:05:22.358][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-21 16:05:22.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:22.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:22.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:22.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:22.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:22.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:22.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:22.384][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.DEBUG[2024-12-21 16:05:22.388][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:05:22.389][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:05:22.390][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.TRACE[2024-12-21 16:05:23.625][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1).
biodb.DEBUG[2024-12-21 16:05:24.881][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-21 16:05:24.883][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.content"
biodb.TRACE[2024-12-21 16:05:24.888][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.request"
biodb.TRACE[2024-12-21 16:05:24.892][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS9633.1.html"
biodb.DEBUG[2024-12-21 16:05:24.895][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-21 16:05:24.896][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-12-21 16:05:24.897][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-12-21 16:05:24.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:24.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:24.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:24.908][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:24.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:24.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:24.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:24.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:24.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:24.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:24.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:24.931][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:24.932][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:24.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:24.934][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:24.936][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:24.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:25.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.092][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:25.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:25.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.097][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:25.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:25.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.106][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:25.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:25.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:25.140][self$createEntryFromContent] Accession numbers: CCDS9633.1.
biodb.TRACE[2024-12-21 16:05:25.148][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:25.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:25.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.153][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:25.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:25.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.158][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:25.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:25.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.163][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:25.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:25.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.167][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:25.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:25.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.172][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:25.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:25.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.177][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:25.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:25.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.193][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:25.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:25.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:25.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:25.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:25.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:25.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.247][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:25.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:25.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.277][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.278][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.281][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.298][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:25.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:25.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.303][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:25.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:25.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.309][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:25.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:25.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.314][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:25.316][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:25.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.318][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.319][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:25.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:25.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.335][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:25.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:25.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.341][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:25.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:25.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.346][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:25.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:25.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.352][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:25.353][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:25.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.356][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.357][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:25.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:25.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.373][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:25.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:25.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.378][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:25.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:25.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.383][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:25.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:25.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.389][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:25.390][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:25.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.393][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.394][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:25.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:25.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.410][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:25.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:25.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.416][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:25.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:25.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.421][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:25.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:25.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.426][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:25.428][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:25.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.430][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:25.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:25.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.447][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:25.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:25.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.453][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:25.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:25.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.458][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:25.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:25.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.464][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:25.465][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:25.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.468][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.469][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:25.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:25.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.485][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:25.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:25.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.490][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:25.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:25.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.495][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:25.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:25.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.501][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:25.502][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:25.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.505][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.506][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:25.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:25.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.522][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:25.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:25.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.528][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:25.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:25.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.533][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:25.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:25.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.538][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:25.540][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:25.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.542][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.544][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:25.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:25.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.565][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:25.566][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:25.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.568][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.575][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:25.576][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:25.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.578][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.584][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.585][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.588][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.594][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:25.595][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:25.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.597][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.603][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:25.605][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:25.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.607][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.613][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:25.614][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:25.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.616][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.622][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:25.624][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:25.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.626][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.632][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:25.633][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:25.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.635][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.658][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3627-content.xml".
biodb.DEBUG[2024-12-21 16:05:25.660][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-12-21 16:05:25.662][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-12-21 16:05:25.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:25.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:25.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:25.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:25.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:25.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:25.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:25.697][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.698][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.701][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.708][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:25.710][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:25.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.712][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.715][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:25.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:25.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.720][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:25.721][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:25.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.723][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.727][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:25.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:25.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.731][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:25.733][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:25.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.735][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.738][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:25.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:25.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.743][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:25.744][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:25.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.747][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.750][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:25.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:25.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.755][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:25.756][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:25.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.759][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.764][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:25.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:25.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.772][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:25.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:25.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.777][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:25.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:25.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:25.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:25.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:25.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:25.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:25.824][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3627.
biodb.TRACE[2024-12-21 16:05:25.827][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:25.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:25.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.831][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:25.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:25.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.836][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:25.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:25.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.841][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:25.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:25.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:25.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:25.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:25.850][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-12-21 16:05:25.851][private$loadEntries] Creating entries from ids [1]: "CCDS43240.1".
biodb.DEBUG[2024-12-21 16:05:25.853][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-21 16:05:25.855][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS43240.1".
biodb.TRACE[2024-12-21 16:05:25.856][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:05:25.859][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2024-12-21 16:05:25.860][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-12-21 16:05:25.862][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-12-21 16:05:25.863][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-12-21 16:05:25.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:25.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:25.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:25.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:25.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:25.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:25.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:25.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.893][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:25.894][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:25.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.896][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.898][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:25.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:25.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.903][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:25.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:25.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.907][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:25.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:25.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.917][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:25.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:25.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:25.950][self$createEntryFromContent] Accession numbers: CCDS43240.1.
biodb.TRACE[2024-12-21 16:05:25.951][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:25.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:25.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.956][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:25.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:25.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.961][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:25.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:25.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.966][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:25.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:25.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.970][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:25.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:25.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.975][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:25.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:25.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.980][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:25.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:25.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:25.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:25.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:25.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:25.997][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:25.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:25.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:26.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:26.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:26.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:26.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:26.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:26.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:26.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:26.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:26.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:26.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:26.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:26.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.036][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:26.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:26.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.041][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:26.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:26.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.046][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:26.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:26.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:26.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:26.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:26.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:26.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:26.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:26.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.077][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:26.079][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:26.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.081][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:26.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:26.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.096][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:26.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:26.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.100][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:26.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:26.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.105][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:26.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:26.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.110][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:26.111][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:26.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.113][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.114][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:26.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:26.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.129][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:26.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:26.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.134][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:26.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:26.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.139][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:26.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:26.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.144][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:26.145][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:26.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.147][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.148][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:26.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:26.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.162][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:26.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:26.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.167][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:26.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:26.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.172][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:26.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:26.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.176][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:26.178][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:26.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.180][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.181][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:26.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:26.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.195][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:26.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:26.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.200][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:26.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:26.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.205][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:26.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:26.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.210][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:26.211][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:26.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.214][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.215][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:26.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:26.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.229][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:26.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:26.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.234][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:26.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:26.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.239][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:26.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:26.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.243][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:26.245][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:26.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.247][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.248][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:26.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:26.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.262][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:26.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:26.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.267][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:26.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:26.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.272][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:26.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:26.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.277][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:26.278][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:26.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.280][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.281][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:26.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:26.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.295][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:26.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:26.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.300][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:26.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:26.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.305][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:26.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:26.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.310][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:26.311][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:26.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.313][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.315][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:26.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:26.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.329][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:26.330][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:26.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.332][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.339][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:26.340][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:26.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.342][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.348][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:26.350][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:26.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.352][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.358][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:26.360][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:26.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.362][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.368][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:26.369][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:26.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.372][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.378][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:26.379][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:26.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.382][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.388][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:26.389][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:26.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.392][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.398][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:26.399][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:26.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.402][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.420][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-4316-content.xml".
biodb.DEBUG[2024-12-21 16:05:26.422][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-12-21 16:05:26.423][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-12-21 16:05:26.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:26.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:26.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:26.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:26.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:26.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:26.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:26.453][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:26.454][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:26.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.457][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:26.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:26.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.464][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:26.465][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:26.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.467][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.469][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:26.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:26.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.474][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:26.476][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:26.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.478][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.480][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:26.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:26.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.485][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:26.486][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:26.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.488][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.491][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:26.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:26.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.495][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:26.497][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:26.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.499][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.501][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:26.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:26.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.506][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:26.507][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:26.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.509][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.513][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:26.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:26.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.519][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:26.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:26.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.524][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:26.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:26.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.529][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:26.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:26.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:26.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:26.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.543][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:26.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:26.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:26.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:26.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:26.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:26.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:26.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:26.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:26.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:26.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:26.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:26.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:26.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:26.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:26.576][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 4316.
biodb.TRACE[2024-12-21 16:05:26.579][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:26.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:26.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.583][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:26.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:26.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:26.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:26.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.593][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:26.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:26.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:26.597][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:26.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:26.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:26.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:26.602][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-12-21 16:05:26.603][private$loadEntries] Creating entries from ids [1]: "CCDS8317.1".
biodb.DEBUG[2024-12-21 16:05:26.604][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-21 16:05:26.606][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS8317.1".
biodb.TRACE[2024-12-21 16:05:26.608][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-21 16:05:26.609][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-21 16:05:26.610][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-12-21 16:05:26.612][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-12-21 16:05:26.613][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-21 16:05:26.614][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-21 16:05:26.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:26.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:26.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:26.626][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:26.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:26.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:26.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:26.630][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.DEBUG[2024-12-21 16:05:26.633][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:05:26.634][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:05:26.636][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.TRACE[2024-12-21 16:05:27.962][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1).
biodb.DEBUG[2024-12-21 16:05:29.285][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-21 16:05:29.289][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.content"
biodb.TRACE[2024-12-21 16:05:29.294][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.request"
biodb.TRACE[2024-12-21 16:05:29.297][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS8317.1.html"
biodb.DEBUG[2024-12-21 16:05:29.300][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-21 16:05:29.301][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-12-21 16:05:29.303][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-12-21 16:05:29.305][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:29.306][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:29.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:29.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:29.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:29.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:29.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:29.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:29.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:29.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.337][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:29.338][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:29.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.340][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.342][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:29.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:29.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.347][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:29.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:29.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.352][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:29.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:29.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:29.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:29.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.361][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:29.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:29.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:29.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:29.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:29.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:29.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:29.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:29.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:29.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:29.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:29.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:29.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:29.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:29.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:29.395][self$createEntryFromContent] Accession numbers: CCDS8317.1.
biodb.TRACE[2024-12-21 16:05:29.396][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:29.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:29.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.401][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:29.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:29.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.406][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:29.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:29.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.410][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:29.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:29.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.415][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:29.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:29.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.420][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:29.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:29.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.425][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:29.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:29.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:29.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:29.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.441][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:29.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:29.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:29.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:29.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:29.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:29.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:29.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:29.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:29.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:29.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:29.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:29.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:29.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:29.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.481][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:29.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:29.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.486][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:29.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:29.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:29.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:29.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:29.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:29.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:29.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:29.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:29.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:29.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.517][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:29.518][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:29.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.520][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:29.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:29.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.536][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:29.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:29.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.541][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:29.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:29.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.546][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:29.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:29.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.550][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:29.552][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:29.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.554][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.555][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:29.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:29.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.569][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:29.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:29.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.574][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:29.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:29.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.579][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:29.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:29.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.584][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:29.585][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:29.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.587][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.588][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:29.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:29.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.603][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:29.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:29.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.607][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:29.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:29.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.612][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:29.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:29.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.617][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:29.618][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:29.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.621][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.622][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:29.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:29.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:29.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:29.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.647][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:29.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:29.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.652][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:29.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:29.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.657][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:29.658][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:29.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.660][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.661][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:29.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:29.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.675][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:29.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:29.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.680][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:29.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:29.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.685][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:29.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:29.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.690][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:29.691][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:29.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.693][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.694][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:29.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:29.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.708][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:29.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:29.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.713][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:29.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:29.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.718][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:29.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:29.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.722][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:29.724][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:29.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.726][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.727][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:29.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:29.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.741][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:29.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:29.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.745][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:29.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:29.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.750][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:29.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:29.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.755][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:29.756][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:29.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.758][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.759][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:29.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:29.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.774][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:29.775][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:29.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.777][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.783][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:29.784][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:29.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.787][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.793][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:29.794][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:29.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.796][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.803][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:29.804][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:29.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.806][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.813][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:29.814][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:29.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.816][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.822][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:29.824][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:29.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.826][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.832][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:29.833][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:29.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.836][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.842][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:29.843][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:29.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.845][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.880][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-50943-content.xml".
biodb.DEBUG[2024-12-21 16:05:29.883][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-12-21 16:05:29.884][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-12-21 16:05:29.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:29.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:29.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:29.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:29.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:29.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:29.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:29.932][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:29.934][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:29.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.936][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:29.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:29.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.945][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:29.946][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:29.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.948][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.952][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:29.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:29.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.957][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:29.959][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:29.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.961][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.965][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:29.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:29.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.970][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:29.971][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:29.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.973][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.977][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:29.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:29.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.982][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:29.984][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:29.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.986][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.990][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:29.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:29.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:29.995][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:29.996][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:29.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:29.998][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:30.006][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:30.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:30.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:30.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:30.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:30.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:30.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:30.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:30.022][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:30.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:30.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:30.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:30.027][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:30.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:30.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:30.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:30.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:30.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:30.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:30.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:30.036][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:30.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:30.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:30.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:30.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:30.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:30.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:30.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:30.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:30.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:30.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:30.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:30.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:30.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:30.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:30.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:30.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:30.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:30.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:30.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:30.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:30.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:30.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:30.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:30.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:30.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:30.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:30.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:30.069][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 50943.
biodb.TRACE[2024-12-21 16:05:30.072][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:30.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:30.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:30.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:30.077][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:30.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:30.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:30.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:30.082][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:30.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:30.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:30.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:30.086][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:30.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:30.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:30.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:30.091][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:30.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:30.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:30.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:30.096][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-12-21 16:05:30.097][private$loadEntries] Creating entries from ids [1]: "CCDS14323.1".
biodb.DEBUG[2024-12-21 16:05:30.098][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-21 16:05:30.100][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14323.1".
biodb.TRACE[2024-12-21 16:05:30.102][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-21 16:05:30.103][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-21 16:05:30.104][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-12-21 16:05:30.106][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-12-21 16:05:30.107][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-21 16:05:30.108][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-21 16:05:30.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:30.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:30.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:30.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:30.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:30.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:30.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:30.124][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.DEBUG[2024-12-21 16:05:30.128][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:05:30.129][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:05:30.131][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.TRACE[2024-12-21 16:05:31.375][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1).
biodb.DEBUG[2024-12-21 16:05:32.910][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-21 16:05:32.913][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.content"
biodb.TRACE[2024-12-21 16:05:32.919][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.request"
biodb.TRACE[2024-12-21 16:05:32.922][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14323.1.html"
biodb.DEBUG[2024-12-21 16:05:32.925][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-21 16:05:32.927][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-12-21 16:05:32.928][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-12-21 16:05:32.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:32.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:32.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:32.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:32.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:32.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:32.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:32.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:32.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:32.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:32.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:32.973][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:32.975][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:32.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:32.977][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:32.979][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:32.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:32.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:32.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:32.984][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:32.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:32.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:32.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:32.988][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:32.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:32.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:32.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:32.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:32.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:32.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:32.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:32.998][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:32.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:33.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:33.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:33.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:33.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:33.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:33.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:33.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:33.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:33.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:33.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:33.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:33.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:33.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:33.031][self$createEntryFromContent] Accession numbers: CCDS14323.1.
biodb.TRACE[2024-12-21 16:05:33.033][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:33.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:33.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.037][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:33.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:33.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.042][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:33.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:33.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.047][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:33.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:33.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.052][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:33.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:33.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.057][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:33.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:33.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.061][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:33.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:33.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:33.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:33.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.077][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:33.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:33.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:33.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:33.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:33.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:33.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:33.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:33.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:33.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:33.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:33.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:33.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:33.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:33.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.118][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:33.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:33.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.123][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:33.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:33.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:33.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:33.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:33.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:33.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:33.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:33.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:33.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:33.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.155][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:33.156][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:33.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.158][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:33.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:33.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.174][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:33.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:33.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.178][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:33.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:33.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.183][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:33.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:33.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.188][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:33.189][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:33.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.192][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.193][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:33.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:33.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.207][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:33.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:33.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.212][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:33.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:33.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.217][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:33.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:33.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.222][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:33.223][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:33.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.225][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.226][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:33.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:33.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.241][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:33.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:33.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.246][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:33.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:33.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.251][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:33.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:33.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.255][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:33.257][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:33.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.259][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.260][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:33.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:33.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.274][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:33.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:33.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.279][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:33.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:33.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.284][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:33.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:33.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.289][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:33.290][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:33.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.293][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.294][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:33.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:33.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.308][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:33.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:33.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.313][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:33.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:33.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.318][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:33.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:33.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.323][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:33.324][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:33.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.326][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.327][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:33.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:33.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.342][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:33.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:33.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.346][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:33.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:33.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.351][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:33.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:33.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.356][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:33.357][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:33.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.360][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.361][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:33.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:33.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.375][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:33.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:33.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.380][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:33.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:33.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.391][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:33.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:33.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.395][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:33.396][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:33.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.399][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.400][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:33.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:33.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.414][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:33.415][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:33.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.417][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.423][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:33.425][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:33.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.427][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.433][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:33.434][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:33.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.436][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.443][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:33.444][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:33.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.446][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.452][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:33.453][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:33.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.456][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.462][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:33.463][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:33.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.465][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.472][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:33.473][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:33.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.475][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.481][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:33.483][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:33.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.485][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.500][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-5551-content.xml".
biodb.DEBUG[2024-12-21 16:05:33.501][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-12-21 16:05:33.503][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-12-21 16:05:33.505][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:33.506][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:33.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:33.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:33.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:33.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:33.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:33.527][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:33.529][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:33.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.531][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:33.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:33.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.538][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:33.539][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:33.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.541][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.543][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:33.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:33.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.548][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:33.550][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:33.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.552][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.554][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:33.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:33.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.559][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:33.560][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:33.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.562][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.564][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:33.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:33.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.569][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:33.571][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:33.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.573][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.575][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:33.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:33.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.580][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:33.581][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:33.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.583][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.586][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:33.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:33.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.593][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:33.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:33.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:33.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:33.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.602][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:33.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:33.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:33.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:33.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.612][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:33.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:33.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:33.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:33.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:33.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:33.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:33.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:33.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:33.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:33.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:33.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:33.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:33.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:33.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:33.646][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 5551.
biodb.TRACE[2024-12-21 16:05:33.648][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:33.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:33.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.653][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:33.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:33.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.658][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:33.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:33.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:33.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:33.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:33.668][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:33.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:33.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:33.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:33.672][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-12-21 16:05:33.674][private$loadEntries] Creating entries from ids [1]: "CCDS7305.1".
biodb.DEBUG[2024-12-21 16:05:33.675][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-21 16:05:33.677][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS7305.1".
biodb.TRACE[2024-12-21 16:05:33.679][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-21 16:05:33.680][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-21 16:05:33.681][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-12-21 16:05:33.683][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-12-21 16:05:33.684][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-21 16:05:33.685][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-21 16:05:33.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:33.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:33.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:33.697][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:33.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:33.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:33.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:33.702][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.DEBUG[2024-12-21 16:05:33.705][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:05:33.706][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:05:33.708][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.TRACE[2024-12-21 16:05:35.000][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1).
biodb.DEBUG[2024-12-21 16:05:36.293][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-21 16:05:36.296][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.content"
biodb.TRACE[2024-12-21 16:05:36.302][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.request"
biodb.TRACE[2024-12-21 16:05:36.305][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS7305.1.html"
biodb.DEBUG[2024-12-21 16:05:36.309][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-21 16:05:36.310][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-12-21 16:05:36.312][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-12-21 16:05:36.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:36.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:36.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:36.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:36.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:36.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:36.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:36.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:36.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:36.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.351][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:36.352][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:36.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.354][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.356][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:36.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:36.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.361][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:36.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:36.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.366][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:36.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:36.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:36.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:36.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.376][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:36.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:36.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:36.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:36.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:36.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:36.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:36.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:36.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:36.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:36.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:36.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:36.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:36.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:36.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:36.409][self$createEntryFromContent] Accession numbers: CCDS7305.1.
biodb.TRACE[2024-12-21 16:05:36.411][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:36.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:36.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.415][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:36.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:36.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.420][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:36.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:36.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.425][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:36.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:36.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.430][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:36.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:36.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.435][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:36.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:36.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.440][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:36.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:36.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:36.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:36.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.463][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:36.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:36.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:36.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:36.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:36.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:36.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:36.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:36.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:36.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:36.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:36.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:36.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:36.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:36.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.504][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:36.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:36.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:36.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:36.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:36.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:36.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:36.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:36.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:36.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:36.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:36.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:36.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.540][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:36.541][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:36.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.543][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:36.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:36.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.558][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:36.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:36.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.563][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:36.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:36.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.568][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:36.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:36.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.573][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:36.574][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:36.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.576][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.577][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:36.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:36.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.592][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:36.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:36.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.597][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:36.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:36.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.601][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:36.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:36.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.606][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:36.608][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:36.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.610][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.611][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:36.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:36.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.625][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:36.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:36.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.630][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:36.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:36.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.635][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:36.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:36.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.639][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:36.641][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:36.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.643][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.644][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:36.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:36.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.658][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:36.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:36.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:36.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:36.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.668][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:36.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:36.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.672][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:36.674][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:36.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.676][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.677][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:36.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:36.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.691][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:36.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:36.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.696][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:36.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:36.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.701][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:36.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:36.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.706][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:36.707][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:36.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.709][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.710][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:36.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:36.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.725][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:36.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:36.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.729][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:36.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:36.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.734][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:36.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:36.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.739][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:36.740][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:36.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.742][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.744][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:36.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:36.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.758][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:36.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:36.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.763][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:36.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:36.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.768][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:36.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:36.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.773][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:36.774][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:36.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.776][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.777][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:36.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:36.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.792][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:36.793][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:36.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.795][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.801][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:36.803][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:36.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.805][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.811][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:36.812][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:36.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.815][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.821][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:36.822][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:36.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.824][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.831][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:36.832][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:36.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.834][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.841][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:36.842][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:36.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.844][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.850][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:36.852][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:36.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.854][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.860][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:36.862][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:36.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.864][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.879][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-916-content.xml".
biodb.DEBUG[2024-12-21 16:05:36.880][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-12-21 16:05:36.882][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-12-21 16:05:36.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:36.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:36.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:36.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:36.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:36.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:36.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:36.907][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:36.909][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:36.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.911][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:36.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:36.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.924][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:36.925][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:36.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.927][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.930][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:36.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:36.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.934][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:36.936][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:36.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.938][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.940][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:36.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:36.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.945][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:36.946][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:36.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.948][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.951][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:36.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:36.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.955][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:36.957][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:36.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.959][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.961][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:36.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:36.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.966][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:36.967][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:36.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.969][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.972][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:36.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:36.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.979][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:36.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:36.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.984][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:36.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:36.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.988][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:36.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:36.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:36.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:36.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:36.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:36.998][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:36.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:37.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:37.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:37.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:37.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:37.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:37.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:37.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:37.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:37.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:37.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:37.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:37.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:37.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:37.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:37.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:37.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:37.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:37.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:37.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:37.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:37.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:37.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:37.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:37.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:37.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:37.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:37.031][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 916.
biodb.TRACE[2024-12-21 16:05:37.034][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:37.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:37.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:37.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:37.038][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:37.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:37.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:37.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:37.043][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:37.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:37.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:37.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:37.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:37.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:37.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:37.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:37.053][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:37.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:37.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:37.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:37.058][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-12-21 16:05:37.059][private$loadEntries] Creating entries from ids [1]: "CCDS31685.1".
biodb.DEBUG[2024-12-21 16:05:37.060][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-21 16:05:37.062][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS31685.1".
biodb.TRACE[2024-12-21 16:05:37.064][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-21 16:05:37.065][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-21 16:05:37.066][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-12-21 16:05:37.068][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-12-21 16:05:37.069][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-21 16:05:37.070][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-21 16:05:37.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:37.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:37.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:37.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:37.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:37.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:37.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:37.087][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.DEBUG[2024-12-21 16:05:37.090][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:05:37.091][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:05:37.092][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.TRACE[2024-12-21 16:05:38.399][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1).
biodb.DEBUG[2024-12-21 16:05:39.502][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-21 16:05:39.506][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.content"
biodb.TRACE[2024-12-21 16:05:39.511][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.request"
biodb.TRACE[2024-12-21 16:05:39.514][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS31685.1.html"
biodb.DEBUG[2024-12-21 16:05:39.517][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-21 16:05:39.519][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-12-21 16:05:39.520][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-12-21 16:05:39.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:39.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:39.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:39.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:39.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:39.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:39.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:39.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:39.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:39.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.556][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:39.559][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:39.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.562][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.564][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:39.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:39.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.571][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:39.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:39.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.577][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:39.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:39.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:39.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:39.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:39.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:39.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:39.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:39.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:39.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:39.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:39.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:39.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:39.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:39.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:39.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:39.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:39.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:39.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:39.626][self$createEntryFromContent] Accession numbers: CCDS31685.1.
biodb.TRACE[2024-12-21 16:05:39.628][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:39.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:39.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.635][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:39.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:39.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.640][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:39.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:39.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.645][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:39.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:39.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.651][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:39.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:39.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.656][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:39.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:39.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.661][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:39.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:39.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:39.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:39.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:39.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:39.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:39.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:39.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:39.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:39.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:39.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:39.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:39.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:39.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:39.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:39.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:39.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:39.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:39.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:39.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.727][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:39.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:39.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.733][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:39.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:39.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:39.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:39.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:39.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:39.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:39.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:39.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.764][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:39.765][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:39.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.768][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:39.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:39.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.784][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:39.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:39.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.789][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:39.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:39.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.793][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:39.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:39.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.798][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:39.800][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:39.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.808][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.811][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:39.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:39.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.825][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:39.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:39.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.831][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:39.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:39.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.836][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:39.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:39.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.841][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:39.842][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:39.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.845][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.846][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:39.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:39.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.860][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:39.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:39.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.865][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:39.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:39.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.869][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:39.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:39.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.874][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:39.875][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:39.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.878][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.879][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:39.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:39.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.893][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:39.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:39.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.898][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:39.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:39.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.903][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:39.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:39.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.908][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:39.909][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:39.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.911][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.912][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:39.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:39.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.926][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:39.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:39.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.931][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:39.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:39.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.936][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:39.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:39.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.941][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:39.942][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:39.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.944][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.946][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:39.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:39.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.960][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:39.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:39.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.965][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:39.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:39.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.970][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:39.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:39.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.974][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:39.976][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:39.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.978][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.979][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:39.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:39.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.993][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:39.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:39.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:39.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:39.998][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:39.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:40.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.003][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:40.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:40.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.007][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:40.009][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:40.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.011][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.012][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-21 16:05:40.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:40.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.027][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:40.028][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:40.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.030][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.037][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:40.038][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:40.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.040][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.046][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:40.048][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:40.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.050][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.056][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:40.057][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:40.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.060][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.066][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:40.067][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:40.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.069][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.075][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:40.077][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:40.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.079][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.085][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:40.086][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:40.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.088][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.095][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:40.096][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:40.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.098][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.105][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-9606-content.xml".
biodb.DEBUG[2024-12-21 16:05:40.106][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-12-21 16:05:40.108][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-12-21 16:05:40.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:40.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:40.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:40.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:40.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:40.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:40.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:40.126][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:40.128][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:40.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.130][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:40.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:40.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.136][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:40.138][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:40.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.140][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.141][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:40.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:40.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.146][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:40.148][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:40.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.150][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.151][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:40.152][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:40.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.155][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.156][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:40.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:40.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.161][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:40.162][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:40.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.164][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.166][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:40.167][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:40.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.169][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.171][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:40.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:40.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.176][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:40.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:40.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:40.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:40.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.185][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:40.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:40.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:40.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:40.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:40.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:40.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:40.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:40.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:40.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:40.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:40.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:40.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:40.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:40.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:40.219][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 9606.
biodb.TRACE[2024-12-21 16:05:40.222][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:40.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:40.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.227][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:40.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:40.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.231][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:40.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:40.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.236][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:40.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:40.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.241][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:40.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:40.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.246][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:40.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:40.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.251][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:40.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:40.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:40.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:40.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.272][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:40.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:40.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:40.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:40.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:40.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:40.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:40.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:40.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:40.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:40.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:40.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:40.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:40.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:40.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:40.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:40.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:40.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:40.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.322][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:40.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:40.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:40.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:40.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:40.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:40.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:40.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:40.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.348][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:40.350][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:40.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.352][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:40.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:40.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.367][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:40.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:40.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.372][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:40.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:40.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.377][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:40.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:40.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.381][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:40.383][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:40.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.385][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.386][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:40.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:40.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.400][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:40.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:40.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.405][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:40.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:40.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.410][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:40.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:40.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.415][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:40.416][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:40.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.418][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.420][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:40.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:40.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.434][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:40.435][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:40.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.437][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.443][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:40.445][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:40.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.447][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:40.453][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:40.455][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:40.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:40.457][ef$get] fields variable is a list.
biodb.INFO [2024-12-21 16:05:40.468][biodb::testThat]
biodb.INFO [2024-12-21 16:05:40.469][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-12-21 16:05:40.470][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:05:40.471][biodb::testThat]
biodb.DEBUG[2024-12-21 16:05:40.474][private$loadEntries] Creating entries from ids [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.DEBUG[2024-12-21 16:05:40.476][conn$getEntryContent] Get NCBI Gene entry content(s) for 8 id(s)...
biodb.TRACE[2024-12-21 16:05:40.478][cch$loadFileContent] Trying to load 8 files from cache: [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.TRACE[2024-12-21 16:05:40.480][cch$loadFileContent] file.exist = [8]: "FALSE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE".
biodb.TRACE[2024-12-21 16:05:40.670][loadFileContents] Loaded 7 files from cache: [7]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3002.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3627.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/4316.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/50943.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/5551.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/916.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/9606.xml".
biodb.DEBUG[2024-12-21 16:05:40.672][conn$getEntryContent] 7 NCBI Gene entry content(s) loaded from cache.
biodb.DEBUG[2024-12-21 16:05:40.673][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI Gene database "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-21 16:05:40.675][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-21 16:05:40.676][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-12-21 16:05:40.677][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-12-21 16:05:40.684][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833&retmode=xml".
biodb.DEBUG[2024-12-21 16:05:40.686][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:05:40.687][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:05:40.689][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833&retmode=xml".
biodb.TRACE[2024-12-21 16:05:40.783][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833&retmode=xml does not exist.
biodb.TRACE[2024-12-21 16:05:40.785][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-12-21 16:05:40.786][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833&retmode=xml" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-12-21 16:05:40.787][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833&retmode=xml).
biodb.TRACE[2024-12-21 16:05:41.153][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/2833.xml"
biodb.DEBUG[2024-12-21 16:05:41.162][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-21 16:05:41.164][self$createEntryFromContent] Creating NCBI Gene entries from 8 content(s).
biodb.DEBUG[2024-12-21 16:05:41.165][self$createEntryFromContent] Parsing 8 NCBI Gene entries.
biodb.DEBUG[2024-12-21 16:05:41.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:41.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:41.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:41.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:41.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:41.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:41.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:41.192][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.194][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.196][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.203][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:41.204][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:41.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.206][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.209][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:41.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:41.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.213][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:41.215][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:41.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.217][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.219][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:41.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:41.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.224][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:41.225][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:41.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.228][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.230][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:41.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:41.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.235][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:41.236][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:41.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.238][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.241][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:41.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:41.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.245][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:41.247][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:41.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.249][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.253][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:41.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:41.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.261][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:41.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:41.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.266][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.270][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.280][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:41.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:41.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:41.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:41.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:41.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:41.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:41.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:41.324][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.325][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.328][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.335][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:41.336][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:41.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.338][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.341][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:41.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:41.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.345][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:41.347][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:41.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.349][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.351][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:41.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:41.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.356][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:41.357][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:41.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.360][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.362][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:41.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:41.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.367][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:41.368][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:41.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.370][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.373][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:41.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:41.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.383][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:41.386][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:41.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.388][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.392][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:41.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:41.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.400][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:41.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:41.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.404][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.418][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:41.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:41.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:41.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:41.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:41.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:41.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:41.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:41.470][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.471][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.474][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.482][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:41.483][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:41.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.485][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.488][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:41.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:41.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.493][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:41.494][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:41.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.496][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.499][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:41.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:41.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.504][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:41.505][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:41.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.508][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.511][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:41.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:41.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.515][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:41.517][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:41.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.519][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.522][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:41.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:41.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.527][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:41.528][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:41.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.530][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.535][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:41.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:41.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.543][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:41.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:41.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.548][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.553][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:41.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:41.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:41.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:41.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:41.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:41.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:41.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:41.609][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.610][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.612][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.620][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:41.621][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:41.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.623][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.625][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:41.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:41.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.630][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:41.632][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:41.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.634][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.636][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:41.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:41.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.641][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:41.642][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:41.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.644][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.647][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:41.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:41.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.652][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:41.653][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:41.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.655][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.658][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:41.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:41.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.662][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:41.664][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:41.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.666][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.670][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:41.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:41.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.677][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:41.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:41.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.681][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.686][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.696][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:41.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:41.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:41.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:41.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:41.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:41.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:41.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:41.760][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.762][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.764][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.774][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:41.775][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:41.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.777][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.782][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:41.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:41.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.787][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:41.788][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:41.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.790][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.795][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:41.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:41.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.799][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:41.801][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:41.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.803][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.807][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:41.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:41.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.812][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:41.814][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:41.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.816][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.820][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:41.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:41.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.825][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:41.826][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:41.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.829][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.837][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:41.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:41.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.849][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:41.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:41.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.854][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.868][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:41.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:41.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:41.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:41.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:41.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:41.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:41.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:41.912][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.914][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.916][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.923][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:41.924][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:41.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.926][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.928][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:41.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:41.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.933][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:41.935][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:41.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.937][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.944][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:41.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:41.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.949][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:41.950][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:41.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.953][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.955][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:41.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:41.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.959][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:41.961][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:41.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.963][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.965][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:41.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:41.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.970][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:41.971][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:41.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.973][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.976][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:41.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:41.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.983][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:41.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:41.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.987][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.992][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:41.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:41.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:41.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:41.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:41.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.001][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:42.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:42.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:42.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:42.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:42.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:42.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:42.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:42.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:42.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:42.043][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.044][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.046][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.053][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:42.054][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:42.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.056][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.058][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:42.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:42.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.063][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:42.064][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:42.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.067][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.069][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:42.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:42.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.074][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:42.075][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:42.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.077][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.079][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:42.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:42.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.084][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:42.085][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:42.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.087][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.090][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:42.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:42.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.095][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:42.096][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:42.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.098][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.101][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:42.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:42.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:42.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:42.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.112][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:42.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:42.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.117][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:42.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:42.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:42.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:42.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:42.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:42.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:42.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:42.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:42.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:42.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:42.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:42.161][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.162][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.164][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.171][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:42.172][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:42.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.174][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.176][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-21 16:05:42.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-21 16:05:42.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.180][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-21 16:05:42.182][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-21 16:05:42.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.184][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.185][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:42.187][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:42.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.189][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.190][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-21 16:05:42.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-21 16:05:42.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.195][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-21 16:05:42.196][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:42.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.199][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.200][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:42.201][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-21 16:05:42.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.203][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.205][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:42.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:42.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.210][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:42.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:42.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.219][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:42.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-21 16:05:42.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:42.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:42.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:42.352][self$createEntryFromContent] Accession numbers: 2833, 3002, 3627, 4316, 50943, 5551, 916, 9606.
biodb.TRACE[2024-12-21 16:05:42.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-21 16:05:42.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-21 16:05:42.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-21 16:05:42.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-21 16:05:42.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-21 16:05:42.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-21 16:05:42.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-21 16:05:42.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-21 16:05:42.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-21 16:05:42.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-21 16:05:42.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-21 16:05:42.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-21 16:05:42.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-21 16:05:42.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-21 16:05:42.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-21 16:05:42.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-21 16:05:42.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-21 16:05:42.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-21 16:05:42.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-21 16:05:42.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-21 16:05:42.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-21 16:05:42.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-21 16:05:42.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-21 16:05:42.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-21 16:05:42.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-21 16:05:42.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-21 16:05:42.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-21 16:05:42.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-21 16:05:42.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-21 16:05:42.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-21 16:05:42.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-21 16:05:42.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-21 16:05:42.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-21 16:05:42.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-21 16:05:42.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-21 16:05:42.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-21 16:05:42.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-21 16:05:42.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-21 16:05:42.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-21 16:05:42.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-21 16:05:42.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-21 16:05:42.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-21 16:05:42.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-21 16:05:42.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-21 16:05:42.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-21 16:05:42.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-21 16:05:42.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-21 16:05:42.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-21 16:05:42.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-21 16:05:42.523][biodb::testThat]
biodb.INFO [2024-12-21 16:05:42.524][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-12-21 16:05:42.525][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:05:42.526][biodb::testThat]
biodb.TRACE[2024-12-21 16:05:42.530][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:42.531][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:42.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.533][ef$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:42.535][function(conn, opt)] Testing searchForEntries() with entry "2833" and field "name".
biodb.TRACE[2024-12-21 16:05:42.551][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:42.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:42.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.556][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:42.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:42.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.560][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:42.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:42.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:42.568][function(conn, opt)] With value "GPR9".
biodb.DEBUG[2024-12-21 16:05:42.574][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2024-12-21 16:05:42.577][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:05:42.579][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:05:42.580][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1".
biodb.TRACE[2024-12-21 16:05:42.654][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1 does not exist.
biodb.TRACE[2024-12-21 16:05:42.655][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-12-21 16:05:42.657][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-12-21 16:05:42.658][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1).
biodb.DEBUG[2024-12-21 16:05:42.721][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-21 16:05:42.724][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content"
biodb.TRACE[2024-12-21 16:05:42.729][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.request"
biodb.DEBUG[2024-12-21 16:05:42.732][function(conn, opt)] With found IDs [1]: "2833".
biodb.INFO [2024-12-21 16:05:42.753][biodb::testThat]
biodb.INFO [2024-12-21 16:05:42.755][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-12-21 16:05:42.756][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:05:42.757][biodb::testThat]
biodb.TRACE[2024-12-21 16:05:42.771][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:42.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:42.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.776][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:42.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:42.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.781][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:42.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:42.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:42.810][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2024-12-21 16:05:42.814][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:05:42.815][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2024-12-21 16:05:42.817][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:05:42.821][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.INFO [2024-12-21 16:05:42.842][biodb::testThat]
biodb.INFO [2024-12-21 16:05:42.844][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-12-21 16:05:42.845][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:05:42.846][biodb::testThat]
biodb.TRACE[2024-12-21 16:05:42.859][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:42.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:42.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.864][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:42.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:42.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.869][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:42.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:42.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.874][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:42.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:42.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.878][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:42.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:42.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:42.883][private$computeField] Compute value for field "aa.seq".
biodb.TRACE[2024-12-21 16:05:42.884][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:42.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:42.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.889][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:42.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:42.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.894][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:42.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:42.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.899][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:42.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:42.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.904][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:42.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:42.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.909][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:42.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:42.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.914][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:42.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:42.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.920][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:42.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:42.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.925][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:42.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:42.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.929][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:42.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:42.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.934][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:42.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:42.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.939][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:42.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:42.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:42.944][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:42.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:42.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:42.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-21 16:05:42.956][biodb::testThat]
biodb.INFO [2024-12-21 16:05:42.957][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-12-21 16:05:42.958][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:05:42.959][biodb::testThat]
biodb.INFO [2024-12-21 16:05:42.974][biodb::testThat]
biodb.INFO [2024-12-21 16:05:42.975][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-12-21 16:05:42.982][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:05:42.985][biodb::testThat]
biodb.INFO [2024-12-21 16:05:42.996][biodb::testThat]
biodb.INFO [2024-12-21 16:05:42.997][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-12-21 16:05:42.998][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:05:42.999][biodb::testThat]
biodb.DEBUG[2024-12-21 16:05:43.004][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/gene?term=2833".
biodb.DEBUG[2024-12-21 16:05:48.048][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/gene?term=2833.
biodb.INFO [2024-12-21 16:05:50.934][biodb::testThat]
biodb.INFO [2024-12-21 16:05:50.936][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-12-21 16:05:50.937][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:05:50.938][biodb::testThat]
biodb.INFO [2024-12-21 16:05:50.947][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-12-21 16:05:50.948][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.gene from the request scheduler
biodb.INFO [2024-12-21 16:05:50.950][self$deleteConn] Connector "ncbi.gene" deleted.
biodb.DEBUG[2024-12-21 16:05:50.951][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2024-12-21 16:05:50.958][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2024-12-21 16:05:50.959][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-12-21 16:05:50.960][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:50.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:50.962][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:50.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:50.964][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:50.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-12-21 16:05:50.971][biodb::testContext]
biodb.INFO [2024-12-21 16:05:50.972][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-21 16:05:50.973][biodb::testContext] Test context - Pubchem comp long tests
biodb.INFO [2024-12-21 16:05:50.974][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-21 16:05:50.975][biodb::testContext]
biodb.INFO [2024-12-21 16:05:50.978][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-12-21 16:05:50.980][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-12-21 16:05:50.985][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-21 16:05:50.987][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-12-21 16:05:50.988][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-12-21 16:05:50.989][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:50.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:50.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:50.992][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-12-21 16:05:50.994][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-12-21 16:05:50.995][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:50.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:50.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:50.998][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-12-21 16:05:50.999][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-12-21 16:05:51.000][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.004][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-12-21 16:05:51.005][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-12-21 16:05:51.006][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-12-21 16:05:51.007][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.010][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-12-21 16:05:51.011][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-12-21 16:05:51.013][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-12-21 16:05:51.014][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.017][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-12-21 16:05:51.018][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-12-21 16:05:51.020][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.023][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-12-21 16:05:51.024][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-12-21 16:05:51.025][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-12-21 16:05:51.026][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.030][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-12-21 16:05:51.031][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-12-21 16:05:51.032][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.036][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-12-21 16:05:51.037][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-12-21 16:05:51.038][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-12-21 16:05:51.039][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.043][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-12-21 16:05:51.044][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-12-21 16:05:51.045][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-12-21 16:05:51.046][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-12-21 16:05:51.047][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-12-21 16:05:51.049][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-12-21 16:05:51.050][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.053][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-12-21 16:05:51.054][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-12-21 16:05:51.055][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.059][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-12-21 16:05:51.060][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-12-21 16:05:51.061][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.064][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-12-21 16:05:51.066][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-12-21 16:05:51.067][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.070][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-12-21 16:05:51.071][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-12-21 16:05:51.072][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.076][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-12-21 16:05:51.077][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-12-21 16:05:51.078][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.081][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-12-21 16:05:51.082][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-12-21 16:05:51.086][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-12-21 16:05:51.087][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.090][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-12-21 16:05:51.092][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-12-21 16:05:51.093][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-12-21 16:05:51.094][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.098][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-12-21 16:05:51.100][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:51.101][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-12-21 16:05:51.102][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.103][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-21 16:05:51.104][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.106][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-21 16:05:51.107][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:51.108][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-21 16:05:51.109][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-21 16:05:51.110][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-21 16:05:51.112][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.113][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-12-21 16:05:51.114][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-21 16:05:51.115][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:51.116][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.118][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-21 16:05:51.118][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-21 16:05:51.118][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-21 16:05:51.118][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-21 16:05:51.118][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-21 16:05:51.119][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-21 16:05:51.120][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:51.121][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:51.122][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-21 16:05:51.124][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:51.125][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:51.127][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-21 16:05:51.128][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:51.129][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-21 16:05:51.130][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-21 16:05:51.131][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:51.133][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:51.134][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-12-21 16:05:51.136][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:51.137][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-12-21 16:05:51.138][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.140][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-21 16:05:51.141][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.142][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-21 16:05:51.143][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:51.144][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-21 16:05:51.146][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-21 16:05:51.147][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-21 16:05:51.148][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.149][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-12-21 16:05:51.150][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-21 16:05:51.152][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:51.153][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.154][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-21 16:05:51.154][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-21 16:05:51.154][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-21 16:05:51.154][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-21 16:05:51.154][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-21 16:05:51.155][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-21 16:05:51.156][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:51.157][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:51.159][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-21 16:05:51.160][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:51.161][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:51.162][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-21 16:05:51.163][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:51.164][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-21 16:05:51.165][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-21 16:05:51.167][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:51.168][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:51.169][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-12-21 16:05:51.171][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.172][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-12-21 16:05:51.173][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.175][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-21 16:05:51.176][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.177][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-21 16:05:51.178][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:51.179][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-21 16:05:51.181][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-21 16:05:51.182][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-21 16:05:51.183][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:51.184][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-12-21 16:05:51.186][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-21 16:05:51.187][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:51.188][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.189][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:51.190][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-21 16:05:51.192][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:51.193][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:51.194][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-21 16:05:51.195][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:51.196][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:51.197][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-21 16:05:51.198][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:51.200][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-21 16:05:51.201][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-21 16:05:51.202][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:51.203][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:51.204][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-12-21 16:05:51.206][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.208][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-12-21 16:05:51.209][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.210][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-21 16:05:51.211][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.212][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-21 16:05:51.214][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:51.215][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-21 16:05:51.216][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-21 16:05:51.217][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-21 16:05:51.219][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:51.220][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-12-21 16:05:51.221][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-21 16:05:51.222][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:51.223][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.225][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:51.226][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-21 16:05:51.227][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:51.228][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:51.229][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-21 16:05:51.230][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:51.232][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:51.233][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-21 16:05:51.234][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:51.235][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-21 16:05:51.236][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-21 16:05:51.237][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:51.239][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:51.240][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-21 16:05:51.241][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.243][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.249][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.254][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.260][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.265][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.270][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.276][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.281][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.287][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.292][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.298][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.303][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.309][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.314][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.320][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.325][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.339][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.345][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-12-21 16:05:51.346][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-12-21 16:05:51.348][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-12-21 16:05:51.350][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-12-21 16:05:51.351][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-12-21 16:05:51.353][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-12-21 16:05:51.354][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-12-21 16:05:51.356][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-12-21 16:05:51.357][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-12-21 16:05:51.359][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-12-21 16:05:51.361][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-12-21 16:05:51.362][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-12-21 16:05:51.364][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-12-21 16:05:51.365][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-12-21 16:05:51.367][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-12-21 16:05:51.368][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-12-21 16:05:51.370][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-12-21 16:05:51.371][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-12-21 16:05:51.373][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-12-21 16:05:51.375][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-12-21 16:05:51.376][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-12-21 16:05:51.378][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-12-21 16:05:51.379][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-12-21 16:05:51.381][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-12-21 16:05:51.382][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-12-21 16:05:51.384][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-12-21 16:05:51.386][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-12-21 16:05:51.387][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-12-21 16:05:51.389][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-12-21 16:05:51.390][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-12-21 16:05:51.392][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-12-21 16:05:51.393][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-12-21 16:05:51.395][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-12-21 16:05:51.396][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-12-21 16:05:51.398][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-12-21 16:05:51.400][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-12-21 16:05:51.401][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-12-21 16:05:51.403][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-12-21 16:05:51.404][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-12-21 16:05:51.406][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-12-21 16:05:51.407][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-12-21 16:05:51.409][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-12-21 16:05:51.410][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-12-21 16:05:51.412][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-12-21 16:05:51.414][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-12-21 16:05:51.415][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-12-21 16:05:51.417][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-12-21 16:05:51.418][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-12-21 16:05:51.420][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-12-21 16:05:51.421][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-12-21 16:05:51.423][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-12-21 16:05:51.424][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-12-21 16:05:51.426][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-12-21 16:05:51.427][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-12-21 16:05:51.429][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-12-21 16:05:51.431][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-12-21 16:05:51.432][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-12-21 16:05:51.434][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-12-21 16:05:51.435][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-12-21 16:05:51.437][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-12-21 16:05:51.438][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-12-21 16:05:51.440][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-12-21 16:05:51.441][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-12-21 16:05:51.443][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-12-21 16:05:51.445][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-12-21 16:05:51.446][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-12-21 16:05:51.448][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-12-21 16:05:51.449][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-12-21 16:05:51.451][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-12-21 16:05:51.452][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-12-21 16:05:51.454][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-12-21 16:05:51.456][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-12-21 16:05:51.457][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-12-21 16:05:51.459][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-12-21 16:05:51.460][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-12-21 16:05:51.462][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-12-21 16:05:51.463][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-12-21 16:05:51.465][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-12-21 16:05:51.466][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-12-21 16:05:51.468][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-12-21 16:05:51.470][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-12-21 16:05:51.471][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-12-21 16:05:51.473][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-12-21 16:05:51.474][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-12-21 16:05:51.477][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-12-21 16:05:51.478][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-21 16:05:51.479][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.481][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.483][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:51.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:51.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.491][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:51.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:51.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.498][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:51.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:51.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.506][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:51.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:51.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.513][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:51.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:51.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.521][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:51.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:51.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:51.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:51.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.536][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:51.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:51.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.543][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:51.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:51.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:51.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:51.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:51.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:51.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.566][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:51.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:51.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.573][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:51.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:51.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.581][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:51.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:51.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:51.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:51.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.596][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:51.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:51.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.603][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:05:51.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:51.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:51.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:51.613][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-12-21 16:05:51.622][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-12-21 16:05:51.624][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.625][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-12-21 16:05:51.627][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.628][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-21 16:05:51.629][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.630][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-21 16:05:51.631][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.633][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-21 16:05:51.634][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-12-21 16:05:51.635][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-21 16:05:51.636][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.637][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-12-21 16:05:51.638][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-21 16:05:51.640][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-12-21 16:05:51.640][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-12-21 16:05:51.641][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:51.642][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:51.643][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-12-21 16:05:51.644][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:51.646][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:51.647][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-21 16:05:51.648][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:51.649][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:51.650][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-21 16:05:51.651][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-12-21 16:05:51.651][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-12-21 16:05:51.652][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-21 16:05:51.653][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-21 16:05:51.655][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.656][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:51.657][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-12-21 16:05:51.659][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.660][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-12-21 16:05:51.662][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.663][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-21 16:05:51.664][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.665][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-21 16:05:51.666][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.668][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-21 16:05:51.669][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-21 16:05:51.670][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-21 16:05:51.671][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.672][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-12-21 16:05:51.674][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-21 16:05:51.675][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-12-21 16:05:51.675][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-12-21 16:05:51.675][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-12-21 16:05:51.675][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-12-21 16:05:51.675][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-12-21 16:05:51.675][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-12-21 16:05:51.676][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:51.677][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-21 16:05:51.678][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-12-21 16:05:51.680][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:51.681][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:51.682][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-21 16:05:51.683][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:51.684][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:51.685][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-21 16:05:51.686][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-21 16:05:51.686][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-12-21 16:05:51.688][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-21 16:05:51.689][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-21 16:05:51.690][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.691][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:51.692][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-12-21 16:05:51.694][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:51.696][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-12-21 16:05:51.697][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.698][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-21 16:05:51.699][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.700][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-21 16:05:51.702][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.703][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-21 16:05:51.704][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-21 16:05:51.705][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-21 16:05:51.706][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.708][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-12-21 16:05:51.709][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-21 16:05:51.710][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-12-21 16:05:51.710][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:51.710][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:51.710][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:51.710][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:51.710][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:51.710][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:51.710][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:51.710][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:51.710][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:51.710][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-12-21 16:05:51.710][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:51.710][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:51.710][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:05:51.711][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:51.713][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-21 16:05:51.713][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-21 16:05:51.713][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-21 16:05:51.714][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-12-21 16:05:51.715][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:51.716][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:51.717][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-21 16:05:51.718][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:51.719][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:51.721][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-21 16:05:51.722][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-21 16:05:51.722][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-12-21 16:05:51.722][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-12-21 16:05:51.723][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-21 16:05:51.724][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-21 16:05:51.725][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.726][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-12-21 16:05:51.728][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-12-21 16:05:51.730][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.738][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-12-21 16:05:51.739][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.741][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-21 16:05:51.742][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.743][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-21 16:05:51.744][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.745][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-21 16:05:51.747][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-21 16:05:51.748][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-21 16:05:51.749][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.750][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-12-21 16:05:51.751][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-21 16:05:51.753][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-12-21 16:05:51.753][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-12-21 16:05:51.754][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-21 16:05:51.755][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:05:51.756][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-12-21 16:05:51.757][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:51.758][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:51.759][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-21 16:05:51.761][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:05:51.762][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:05:51.763][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-21 16:05:51.764][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-21 16:05:51.764][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-12-21 16:05:51.764][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-12-21 16:05:51.765][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-21 16:05:51.766][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-21 16:05:51.767][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-21 16:05:51.769][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-12-21 16:05:51.770][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-12-21 16:05:51.772][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-12-21 16:05:51.774][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-12-21 16:05:51.775][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-12-21 16:05:51.777][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-12-21 16:05:51.779][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-12-21 16:05:51.785][super$initialize] Initialize connector ncbi.pubchem.comp.
biodb.DEBUG[2024-12-21 16:05:51.787][super$initialize] Register connector ncbi.pubchem.comp with the request scheduler
biodb.DEBUG[2024-12-21 16:05:51.788][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.comp.
biodb.DEBUG[2024-12-21 16:05:51.790][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2024-12-21 16:05:51.791][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-12-21 16:05:51.792][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-12-21 16:05:51.794][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2024-12-21 16:05:51.796][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-12-21 16:05:51.797][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-12-21 16:05:51.798][rule$addConnector] Connector "ncbi.pubchem.comp" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-12-21 16:05:51.803][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.comp for database class ncbi.pubchem.comp .
biodb.INFO [2024-12-21 16:05:51.809][biodb::testThat]
biodb.INFO [2024-12-21 16:05:51.810][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-12-21 16:05:51.811][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:05:51.813][biodb::testThat]
biodb.TRACE[2024-12-21 16:05:51.817][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-2-content.xml".
biodb.DEBUG[2024-12-21 16:05:51.818][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-12-21 16:05:51.821][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-12-21 16:05:51.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:51.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:51.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:51.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:51.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:51.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:51.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:51.840][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:51.841][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:51.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:51.844][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:51.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:51.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:51.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:51.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:51.850][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:51.851][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:51.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:51.854][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:51.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:51.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:51.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:51.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:51.860][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:51.862][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:51.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:51.864][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:51.865][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:51.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:51.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:51.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:51.870][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:51.872][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:51.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:51.874][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:51.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:51.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:51.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:51.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:51.881][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:51.882][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:51.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:51.884][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:51.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:51.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:51.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:51.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:51.891][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:51.892][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:51.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:51.894][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:51.896][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:51.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:51.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:51.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:51.901][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:05:51.902][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:51.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:51.904][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:51.906][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:05:51.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:51.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:51.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:51.911][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:51.912][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:51.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:51.914][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:51.916][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:51.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:51.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:51.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:51.921][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:51.922][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:51.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:51.924][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:51.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:51.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:51.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:51.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:51.931][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:51.932][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:51.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:51.934][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:51.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:51.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:51.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:51.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:51.941][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:51.942][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:51.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:51.944][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:51.946][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:51.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:51.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:51.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:51.951][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:05:51.952][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:51.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:51.954][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:51.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:05:51.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:51.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:51.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:51.961][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:51.962][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:51.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:51.964][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:51.966][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:51.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:51.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:51.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:51.971][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:51.972][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:51.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:51.974][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:51.976][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:51.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:51.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:51.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:51.981][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:05:51.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:51.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:51.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:51.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:51.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:51.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:51.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:51.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:51.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:51.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:51.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:51.995][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:05:51.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:51.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:51.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.000][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:52.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:52.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:52.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:52.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.009][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:05:52.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:52.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:52.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:52.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:52.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:52.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.023][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:05:52.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:52.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.028][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:52.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:52.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:52.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:52.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.038][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:05:52.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:52.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:52.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:52.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.047][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:52.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:52.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.052][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:52.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:52.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.057][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:52.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:52.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.062][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:52.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:52.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:52.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:52.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.071][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:52.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:52.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:52.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:52.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:52.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:52.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:52.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:52.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:52.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:52.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:52.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:52.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:52.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:52.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:52.105][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2.
biodb.TRACE[2024-12-21 16:05:52.108][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:52.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:52.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.112][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:52.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:52.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.117][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:52.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:52.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.122][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:52.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:52.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.127][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:52.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:52.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.132][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:52.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:52.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.137][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:52.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:52.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:52.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:52.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.154][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:52.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:52.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:52.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:52.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:52.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:52.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:52.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:52.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:52.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:52.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:52.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:52.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:52.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:52.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:52.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:52.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.206][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:52.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:52.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.211][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:52.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:52.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:52.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:52.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:52.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:52.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:52.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:52.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.238][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:52.240][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:52.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.242][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:52.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:52.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.257][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:05:52.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:52.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:52.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:52.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:52.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:52.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.271][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:05:52.273][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:52.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.275][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.276][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:05:52.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:52.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:05:52.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:52.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:52.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:52.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:52.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:52.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.305][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:05:52.307][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:52.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.309][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:05:52.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:52.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.324][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:52.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:52.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.329][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:52.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:52.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.334][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:52.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:52.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.339][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:52.340][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:52.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.342][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.343][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:52.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:52.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.358][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:52.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:52.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.363][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:52.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:52.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.367][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:52.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:52.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.372][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:52.373][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:52.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.376][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.377][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:52.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:52.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.391][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:52.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:52.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.396][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:52.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:52.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.401][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:52.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:52.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.406][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:52.407][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:52.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.409][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.410][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:52.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:52.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.425][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:52.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:52.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.430][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:52.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:52.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.434][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:52.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:52.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.441][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:52.442][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:52.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.445][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.446][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:52.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:52.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:52.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:52.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:52.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:52.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:52.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:52.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.475][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:52.476][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:52.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.478][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:52.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:52.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:52.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:52.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:52.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:52.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.503][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:52.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:52.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.508][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:52.509][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:52.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.511][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:52.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:52.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:52.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:52.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:52.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:52.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:52.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:52.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.541][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:52.543][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:52.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.545][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:52.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:52.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:52.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:52.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:52.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:52.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.570][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:52.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:52.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.575][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:52.576][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:52.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.579][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:52.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:52.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:52.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:52.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:52.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:52.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:52.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:52.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.615][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:52.617][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:52.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.619][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:52.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:52.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.634][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:52.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:52.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.639][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:52.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:52.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.644][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:52.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:52.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.648][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:52.650][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:52.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.652][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.653][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:52.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:52.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:52.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:52.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.672][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:52.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:52.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:52.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:52.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.682][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:52.683][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:52.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.685][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.686][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:52.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:52.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.700][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:52.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:52.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:52.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:52.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.710][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:52.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:52.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.715][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:52.716][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:52.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.718][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:52.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:52.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.734][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:52.735][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:52.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.737][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.743][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:52.745][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:52.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.747][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.753][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:52.755][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:52.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.757][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.763][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:52.764][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:52.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.767][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.773][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:52.774][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:52.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.777][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.783][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:52.785][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:52.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.787][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.793][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:52.794][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:52.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.797][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.803][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:52.804][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:52.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.807][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.813][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:52.814][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:52.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.816][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.822][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:52.824][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:52.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.826][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.832][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:52.834][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:52.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.836][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.842][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:52.844][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:52.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.846][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.852][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:52.854][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:52.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.856][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.862][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:52.864][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:52.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.866][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.872][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:52.873][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:52.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.876][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.883][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-65124-content.xml".
biodb.DEBUG[2024-12-21 16:05:52.884][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-12-21 16:05:52.886][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-12-21 16:05:52.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:52.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:52.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:52.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:52.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:52.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:52.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:52.902][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:52.903][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:52.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.906][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:52.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:52.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.926][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:52.927][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:52.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.929][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:52.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:52.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.936][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:52.937][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:52.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.939][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.941][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:52.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:52.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.946][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:52.947][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:52.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.949][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.951][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:52.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:52.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.956][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:52.957][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:52.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.959][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:52.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:52.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.966][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:52.967][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:52.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.969][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.971][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:52.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:52.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.976][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:05:52.977][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:52.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.979][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.981][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:05:52.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:52.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.986][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:52.987][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:52.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.989][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.991][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:52.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:52.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:52.996][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:52.997][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:52.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:52.999][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:53.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:53.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.005][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:53.007][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:53.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.009][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:53.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:53.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.015][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:53.017][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:53.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.019][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.027][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:53.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:53.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.032][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:05:53.033][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:53.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.035][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:05:53.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:53.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.042][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:53.043][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:53.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.045][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.047][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:53.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:53.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.052][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:53.053][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:53.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.055][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.057][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:53.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:53.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.062][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:05:53.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:53.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:53.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:53.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.071][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:53.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:53.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.076][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:05:53.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:53.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:53.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:53.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.086][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:53.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:53.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.091][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:05:53.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:53.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:53.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:53.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.100][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:53.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:53.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.105][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:05:53.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:53.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.110][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:53.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:53.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:53.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:53.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.119][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:05:53.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:53.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:53.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:53.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:53.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:53.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.134][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:53.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:53.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:53.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:53.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.144][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:53.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:53.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:53.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:53.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.154][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:53.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:53.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:53.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:53.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:53.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:53.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:53.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:53.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:53.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:53.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:53.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:53.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:53.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:53.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:53.187][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 65124.
biodb.TRACE[2024-12-21 16:05:53.190][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:53.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:53.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.195][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:53.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:53.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.200][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:53.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:53.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.205][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:53.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:53.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.209][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:53.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:53.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.214][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:53.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:53.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.219][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:53.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:53.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:53.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:53.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:53.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:53.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:53.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:53.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:53.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:53.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:53.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:53.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:53.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:53.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:53.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:53.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:53.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:53.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.276][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:53.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:53.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:53.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:53.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.286][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:53.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:53.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:53.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:53.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:53.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:53.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:53.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:53.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.314][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:53.315][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:53.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.317][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:53.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:53.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:53.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:53.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:53.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:53.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:53.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:53.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.347][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:53.349][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:53.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.351][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:53.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:53.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:53.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:53.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:53.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:53.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:53.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:53.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.381][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:53.382][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:53.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.384][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:53.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:53.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.400][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:53.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:53.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.405][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:53.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:53.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.410][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:53.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:53.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.415][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:53.416][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:53.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.418][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.419][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:53.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:53.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.433][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:53.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:53.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.438][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:53.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:53.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.443][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:53.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:53.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.454][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:53.455][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:53.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.458][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.459][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:53.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:53.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.473][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:53.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:53.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.478][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:53.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:53.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.483][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:53.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:53.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.488][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:53.489][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:53.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.491][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.492][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:53.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:53.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.507][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:53.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:53.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.511][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:53.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:53.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.516][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:53.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:53.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.521][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:53.522][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:53.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.525][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.526][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:53.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:53.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.540][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:53.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:53.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.545][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:53.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:53.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.550][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:53.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:53.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.555][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:53.556][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:53.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.559][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:53.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:53.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:53.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:53.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:53.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:53.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:53.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:53.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.589][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:53.591][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:53.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.593][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.595][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:53.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:53.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:53.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:53.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:53.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:53.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:53.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:53.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.624][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:53.625][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:53.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.628][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:53.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:53.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:53.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:53.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.649][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:53.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:53.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.654][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:53.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:53.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.659][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:53.660][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:53.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.662][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.663][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:53.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:53.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:53.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:53.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.683][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:53.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:53.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:53.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:53.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.693][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:53.694][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:53.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.696][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:53.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:53.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:53.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:53.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:53.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:53.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.722][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:53.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:53.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.727][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:53.728][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:53.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.730][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:53.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:53.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:53.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:53.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:53.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:53.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.756][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:53.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:53.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.761][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:53.762][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:53.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.765][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.766][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:53.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:53.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.780][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:53.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:53.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.785][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:53.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:53.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.790][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:53.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:53.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.795][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:53.796][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:53.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.798][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.799][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:53.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:53.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.814][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:53.815][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:53.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.818][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.824][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:53.825][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:53.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.828][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.834][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:53.835][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:53.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.838][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.844][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:53.845][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:53.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.847][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.854][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:53.855][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:53.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.857][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.863][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:53.865][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:53.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.867][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.873][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:53.874][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:53.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.876][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.883][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:53.890][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:53.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.892][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.899][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:53.900][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:53.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.902][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.908][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:53.909][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:53.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.912][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.918][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:53.919][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:53.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.921][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.927][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:53.929][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:53.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.931][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.937][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:53.938][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:53.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.941][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.947][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:53.948][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:53.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.950][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:53.957][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:53.958][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:53.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:53.960][ef$get] fields variable is a list.
biodb.INFO [2024-12-21 16:05:53.971][biodb::testThat]
biodb.INFO [2024-12-21 16:05:53.972][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-12-21 16:05:53.974][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:05:53.975][biodb::testThat]
biodb.DEBUG[2024-12-21 16:05:53.977][private$loadEntries] Creating entries from ids [2]: "2, 65124".
biodb.DEBUG[2024-12-21 16:05:53.979][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-12-21 16:05:53.983][cch$loadFileContent] Trying to load 2 files from cache: [2]: "2, 65124".
biodb.TRACE[2024-12-21 16:05:53.985][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2024-12-21 16:05:54.012][loadFileContents] Loaded 2 files from cache: [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/65124.xml".
biodb.DEBUG[2024-12-21 16:05:54.014][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-12-21 16:05:54.015][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-12-21 16:05:54.017][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-12-21 16:05:54.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:54.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:54.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:54.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:54.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:54.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:54.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:54.034][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:54.035][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:54.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.038][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:54.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:54.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.044][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:54.045][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:54.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.048][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:54.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:54.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.054][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:54.056][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:54.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.058][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.059][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:54.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:54.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.064][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:54.066][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:54.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.068][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:54.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:54.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.074][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:54.076][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:54.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.078][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.079][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:54.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:54.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.084][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:54.086][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:54.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.088][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:54.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:54.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.094][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:05:54.096][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:54.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.098][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.100][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:05:54.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:54.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.105][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:54.106][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:54.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.108][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.110][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:54.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:54.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.115][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:54.116][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:54.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.118][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:54.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:54.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.125][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:54.126][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:54.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.129][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:54.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:54.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.135][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:54.137][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:54.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.139][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.140][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:54.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:54.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.145][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:05:54.146][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:54.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.149][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:05:54.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:54.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.155][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:54.156][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:54.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.159][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.160][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:54.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:54.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.165][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:54.166][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:54.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.169][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.170][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:54.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:54.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.175][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:05:54.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:54.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:54.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:54.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:54.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:54.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.189][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:05:54.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:54.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:54.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:54.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:54.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:54.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.204][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:05:54.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:54.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:54.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:54.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.213][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:54.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:54.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.218][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:05:54.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:54.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:54.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:54.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:54.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:54.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.232][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:05:54.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:54.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:54.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:54.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:54.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:54.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.246][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:54.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:54.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.251][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:54.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:54.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.256][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:54.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:54.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:54.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:54.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.265][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:54.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:54.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:54.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:54.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:54.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:54.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:54.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:54.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:54.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:54.286][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:54.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:54.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:54.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:54.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:54.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:54.300][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:54.301][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:54.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.303][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:54.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:54.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.309][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:54.311][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:54.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.313][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:54.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:54.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.319][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:54.321][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:54.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.323][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.324][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:54.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:54.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.329][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:54.331][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:54.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.333][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:54.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:54.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.339][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:54.340][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:54.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.343][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:54.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:54.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.355][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:54.356][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:54.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.359][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:54.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:54.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.365][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:05:54.366][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:54.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.368][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.370][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:05:54.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:54.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.375][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:54.376][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:54.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.378][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.380][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:54.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:54.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.384][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:54.386][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:54.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.388][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:54.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:54.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.394][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:54.396][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:54.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.398][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:54.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:54.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.404][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:54.406][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:54.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.408][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.409][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:54.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:54.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.414][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:05:54.416][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:54.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.418][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:05:54.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:54.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.425][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:54.426][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:54.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.429][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.430][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:54.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:54.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.435][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:54.436][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:54.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.439][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.440][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:54.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:54.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.445][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:05:54.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:54.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:54.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:54.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:54.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:54.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.459][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:05:54.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:54.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:54.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:54.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:54.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:54.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.474][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:05:54.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:54.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:54.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:54.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:54.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:54.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.488][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:05:54.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:54.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:54.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:54.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:54.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:54.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.502][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:05:54.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:54.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:54.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:54.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:54.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:54.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.517][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:54.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:54.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.521][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:54.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:54.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.526][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:54.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:54.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:54.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:54.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.536][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:54.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:54.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:54.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:54.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:54.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:54.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:54.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:54.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:54.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:54.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:54.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:54.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:54.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:54.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:54.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:54.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:54.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:54.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:54.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:54.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:54.583][self$createEntryFromContent] Accession numbers: 2, 65124.
biodb.TRACE[2024-12-21 16:05:54.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-21 16:05:54.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-21 16:05:54.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-21 16:05:54.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-21 16:05:54.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-21 16:05:54.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-21 16:05:54.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-21 16:05:54.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-21 16:05:54.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-21 16:05:54.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-21 16:05:54.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-21 16:05:54.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-21 16:05:54.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-21 16:05:54.628][biodb::testThat]
biodb.INFO [2024-12-21 16:05:54.629][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-12-21 16:05:54.630][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:05:54.632][biodb::testThat]
biodb.TRACE[2024-12-21 16:05:54.635][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:54.636][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:54.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.638][ef$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:54.640][function(conn, opt)] Testing searchForEntries() with entry "2" and field "name".
biodb.TRACE[2024-12-21 16:05:54.656][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:54.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:54.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.661][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:54.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:54.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.665][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:54.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:54.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:54.673][function(conn, opt)] With value "(2-acetyloxy-3-carboxypropyl)-trimethylazanium".
biodb.DEBUG[2024-12-21 16:05:54.679][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-12-21 16:05:54.682][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:05:54.684][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-12-21 16:05:54.685][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:05:54.698][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2024-12-21 16:05:54.700][function(conn, opt)] With found IDs [5]: "87229113, 25217148, 450343, 450342, 2".
biodb.TRACE[2024-12-21 16:05:54.716][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:54.718][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:54.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.720][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.721][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:54.722][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:54.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.725][ef$get] fields variable is a list.
biodb.INFO [2024-12-21 16:05:54.730][biodb::testThat]
biodb.INFO [2024-12-21 16:05:54.732][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-12-21 16:05:54.733][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:05:54.734][biodb::testThat]
biodb.TRACE[2024-12-21 16:05:54.748][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:54.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:54.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:54.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:54.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.758][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:54.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:54.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:54.795][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-12-21 16:05:54.798][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:05:54.800][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-12-21 16:05:54.801][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:05:54.803][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.INFO [2024-12-21 16:05:54.826][biodb::testThat]
biodb.INFO [2024-12-21 16:05:54.827][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-12-21 16:05:54.828][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:05:54.829][biodb::testThat]
biodb.TRACE[2024-12-21 16:05:54.841][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:54.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:54.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.846][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:54.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:54.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:54.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:54.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.856][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:54.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:54.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.861][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:54.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:54.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.865][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:54.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:54.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.870][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:54.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:54.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.876][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:54.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:54.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.881][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:05:54.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:05:54.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.886][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:54.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:05:54.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.891][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:54.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:54.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.895][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:05:54.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:05:54.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.900][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:54.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-21 16:05:54.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:54.905][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:54.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-21 16:05:54.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:54.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-21 16:05:54.918][biodb::testThat]
biodb.INFO [2024-12-21 16:05:54.919][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-12-21 16:05:54.920][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:05:54.921][biodb::testThat]
biodb.INFO [2024-12-21 16:05:54.932][biodb::testThat]
biodb.INFO [2024-12-21 16:05:54.933][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-12-21 16:05:54.934][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:05:54.935][biodb::testThat]
biodb.INFO [2024-12-21 16:05:54.947][biodb::testThat]
biodb.INFO [2024-12-21 16:05:54.948][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-12-21 16:05:54.949][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:05:54.950][biodb::testThat]
biodb.DEBUG[2024-12-21 16:05:54.954][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/compound/2".
biodb.DEBUG[2024-12-21 16:05:55.109][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/compound/2.
biodb.INFO [2024-12-21 16:05:55.245][biodb::testThat]
biodb.INFO [2024-12-21 16:05:55.247][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-12-21 16:05:55.248][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:05:55.249][biodb::testThat]
biodb.DEBUG[2024-12-21 16:05:55.343][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?cid=2&t=l.
biodb.TRACE[2024-12-21 16:05:55.424][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:55.425][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:55.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:55.427][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:55.429][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:55.430][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:55.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:55.432][ef$get] fields variable is a list.
biodb.INFO [2024-12-21 16:05:55.434][biodb::testThat]
biodb.INFO [2024-12-21 16:05:55.436][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2024-12-21 16:05:55.437][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:05:55.438][biodb::testThat]
biodb.TRACE[2024-12-21 16:05:55.452][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:55.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:55.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:55.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:55.457][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:55.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:55.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:55.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:55.462][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:55.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:55.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:55.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:55.557][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-12-21 16:05:55.561][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:05:55.562][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-12-21 16:05:55.564][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:05:55.566][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2024-12-21 16:05:55.646][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-12-21 16:05:55.650][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:05:55.651][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-12-21 16:05:55.653][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:05:55.655][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.TRACE[2024-12-21 16:05:55.674][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-21 16:05:55.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-21 16:05:55.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:55.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:55.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:55.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:55.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:55.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:55.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:55.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:55.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:55.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:55.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:55.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:55.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:55.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:55.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:55.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:55.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:55.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:55.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:55.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:55.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:55.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:55.717][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-21 16:05:55.721][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:05:55.723][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-12-21 16:05:55.725][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:05:55.738][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-12-21 16:05:55.756][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-12-21 16:05:55.760][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:05:55.762][cch$loadFileContent] Trying to load 1 files from cache: [1]: "43af01c58cfaf2fe3448c11004a21986".
biodb.TRACE[2024-12-21 16:05:55.763][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:05:55.791][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/43af01c58cfaf2fe3448c11004a21986.content".
biodb.DEBUG[2024-12-21 16:05:56.091][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-12-21 16:05:56.095][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:05:56.097][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5a651e56a091cb06291b388106735d55".
biodb.TRACE[2024-12-21 16:05:56.098][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:05:56.112][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/5a651e56a091cb06291b388106735d55.content".
biodb.DEBUG[2024-12-21 16:05:56.140][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.27[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-12-21 16:05:56.144][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:05:56.146][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d3d0da2755d093596dae584b7698bc73".
biodb.TRACE[2024-12-21 16:05:56.147][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:05:56.161][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/d3d0da2755d093596dae584b7698bc73.content".
biodb.TRACE[2024-12-21 16:05:56.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:56.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:56.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:56.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:56.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:56.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:56.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:56.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:56.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:56.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:56.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:56.213][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-21 16:05:56.217][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:05:56.219][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1384af38a786fc6768cd7f1e796d96ab".
biodb.TRACE[2024-12-21 16:05:56.220][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:05:56.235][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1384af38a786fc6768cd7f1e796d96ab.content".
biodb.DEBUG[2024-12-21 16:05:56.254][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-12-21 16:05:56.257][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:05:56.259][cch$loadFileContent] Trying to load 1 files from cache: [1]: "983d3a3af3901d23b5d919d379c6bd32".
biodb.TRACE[2024-12-21 16:05:56.261][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:05:56.275][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/983d3a3af3901d23b5d919d379c6bd32.content".
biodb.DEBUG[2024-12-21 16:05:56.305][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-12-21 16:05:56.309][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:05:56.311][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9a9be2efcff8c77fef3b8a87f25b444".
biodb.TRACE[2024-12-21 16:05:56.312][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:05:56.327][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/b9a9be2efcff8c77fef3b8a87f25b444.content".
biodb.DEBUG[2024-12-21 16:05:56.355][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358309[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-12-21 16:05:56.359][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:05:56.361][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6d4e46c6f0a021fc6e92911d60537192".
biodb.TRACE[2024-12-21 16:05:56.362][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:05:56.366][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6d4e46c6f0a021fc6e92911d60537192.content".
biodb.TRACE[2024-12-21 16:05:56.388][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-21 16:05:56.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-21 16:05:56.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-21 16:05:56.403][biodb::testThat]
biodb.INFO [2024-12-21 16:05:56.404][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-12-21 16:05:56.406][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:05:56.407][biodb::testThat]
biodb.TRACE[2024-12-21 16:05:56.410][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-21 16:05:56.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-21 16:05:56.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.415][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-21 16:05:56.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-21 16:05:56.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:56.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:56.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:56.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:56.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:56.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:56.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:56.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:56.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:56.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:56.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:56.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:56.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:56.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:56.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:56.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:56.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:56.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:56.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:56.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:56.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:56.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:56.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:56.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:56.481][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-21 16:05:56.484][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:05:56.486][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-12-21 16:05:56.487][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:05:56.489][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-12-21 16:05:56.491][private$loadEntries] Creating entries from ids [3]: "172417118, 172414340, 172414267".
biodb.DEBUG[2024-12-21 16:05:56.493][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-12-21 16:05:56.494][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172417118, 172414340, 172414267".
biodb.TRACE[2024-12-21 16:05:56.496][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-12-21 16:05:56.536][loadFileContents] Loaded 3 files from cache: [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172417118.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172414340.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172414267.xml".
biodb.DEBUG[2024-12-21 16:05:56.538][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-12-21 16:05:56.540][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-12-21 16:05:56.541][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-12-21 16:05:56.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:56.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:56.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:56.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:56.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:56.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:56.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:56.558][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:56.559][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:56.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.561][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:56.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:56.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.568][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:56.569][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:56.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.571][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.573][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:56.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:56.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.578][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:56.579][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:56.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.581][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.583][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:56.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:56.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.588][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:56.589][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:56.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.592][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:56.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:56.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.598][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:56.599][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:56.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.601][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:56.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:56.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.608][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:56.609][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:56.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.611][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:56.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:56.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.618][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:05:56.619][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:56.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.621][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.623][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:05:56.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:56.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.628][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:56.629][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:56.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.631][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.633][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:56.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:56.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.638][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:56.639][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:56.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.641][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:56.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:56.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.647][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:56.649][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:56.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.651][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:56.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:56.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.657][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:56.658][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:56.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.661][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.662][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:56.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:56.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.667][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:05:56.668][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:56.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.670][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:05:56.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:56.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.677][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:56.678][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:56.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.680][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.682][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:56.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:56.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.686][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:56.688][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:56.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.690][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.691][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:56.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:56.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.696][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:05:56.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:56.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.701][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:56.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:56.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:56.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:56.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.710][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:05:56.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:56.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:56.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:56.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:56.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:56.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.725][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:05:56.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:56.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:56.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:56.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:56.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:56.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.739][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:05:56.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:56.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:56.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:56.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:56.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:56.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.753][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:05:56.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:56.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:56.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:56.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:56.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:56.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.767][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:56.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:56.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.779][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:56.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:56.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.784][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:56.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:56.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:56.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:56.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.794][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:56.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:56.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:56.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:56.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:56.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:56.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:56.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:56.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:56.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:56.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:56.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:56.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:56.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:56.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:56.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:56.828][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:56.829][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:56.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.832][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:56.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:56.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.838][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:56.839][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:56.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.841][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:56.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:56.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.848][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:56.849][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:56.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.851][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:56.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:56.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.858][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:56.859][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:56.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.861][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:56.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:56.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.868][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:56.869][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:56.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.871][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:56.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:56.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.878][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:56.879][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:56.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.881][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.883][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:56.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:56.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.888][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:05:56.889][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:56.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.891][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.893][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:05:56.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:56.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.898][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:56.899][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:56.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.901][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.903][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:56.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:56.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.908][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:56.909][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:56.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.911][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.913][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:56.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:56.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.918][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:56.919][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:56.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.921][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:56.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:56.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.927][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:56.929][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:56.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.931][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.932][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:56.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:56.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.937][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:05:56.938][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:56.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.941][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:05:56.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:56.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.947][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:56.948][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:56.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.950][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.952][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:56.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:56.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.957][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:56.958][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:56.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.960][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.962][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:56.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:56.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.967][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:05:56.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:56.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.971][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:56.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:56.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.976][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:56.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:56.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.981][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:05:56.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:56.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.986][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:56.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:56.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:56.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:56.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:56.995][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:05:56.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:56.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:56.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.000][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:57.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:57.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:57.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:57.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.009][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:05:57.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:57.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:57.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:57.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:57.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:57.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.023][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:05:57.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:57.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.028][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:57.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:57.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:57.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:57.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.037][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:57.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:57.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.047][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:57.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:57.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:57.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:57.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:57.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:57.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:57.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:57.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:57.075][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:57.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:57.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:57.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:57.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:57.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:57.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:57.091][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:57.092][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:57.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.094][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:57.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:57.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.100][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:57.102][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:57.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.104][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:57.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:57.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.110][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:57.112][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:57.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.114][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.115][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:57.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:57.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.120][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:57.121][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:57.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.124][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:57.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:57.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.130][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:57.132][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:57.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.134][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:57.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:57.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.140][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:57.142][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:57.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.144][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:57.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:57.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.150][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:05:57.152][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:57.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.154][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.155][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:05:57.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:57.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.160][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:57.162][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:57.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.164][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.165][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:57.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:57.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.170][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:57.171][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:57.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.174][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.175][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:57.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:57.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.187][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:57.188][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:57.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.191][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:57.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:57.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.197][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:57.198][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:57.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.200][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.202][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:57.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:57.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.207][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:05:57.208][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:57.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.210][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:05:57.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:57.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.216][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:57.218][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:57.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.220][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.221][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:57.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:57.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.226][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:57.227][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:57.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.230][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.231][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:57.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:57.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.236][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:05:57.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:57.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:57.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:57.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.245][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:57.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:57.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.250][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:05:57.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:57.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.255][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:57.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:57.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:57.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:57.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.264][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:05:57.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:57.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:57.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:57.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:57.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:57.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.279][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:05:57.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:57.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.283][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:57.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:57.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:57.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:57.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.293][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:05:57.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:57.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.297][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:57.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:57.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:57.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:57.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.307][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:57.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:57.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:57.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:57.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.327][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:57.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:57.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:57.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:57.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:57.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:57.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:57.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:57.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:57.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:57.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:57.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:57.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:57.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:57.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:57.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:57.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:57.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:57.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:57.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:57.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:57.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:57.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:57.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:57.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:57.389][self$createEntryFromContent] Accession numbers: 172417118, 172414340, 172414267.
biodb.DEBUG[2024-12-21 16:05:57.390][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:05:57.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:57.393][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:57.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:57.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:57.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:57.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:57.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:57.405][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.410][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.415][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:05:57.416][private$selectFields]
biodb.TRACE[2024-12-21 16:05:57.417][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:05:57.418][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:05:57.419][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:05:57.420][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.422][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.424][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.425][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.426][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.429][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.430][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:05:57.431][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:05:57.432][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.434][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.436][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.437][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:05:57.438][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.443][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.448][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.460][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417118].
biodb.DEBUG[2024-12-21 16:05:57.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:57.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:57.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:57.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:57.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:57.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:57.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:57.475][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.480][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.485][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:05:57.486][private$selectFields]
biodb.TRACE[2024-12-21 16:05:57.487][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:05:57.488][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:05:57.490][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:05:57.491][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.492][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.494][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.495][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.497][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.499][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.500][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:05:57.501][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:05:57.502][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.504][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.506][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.507][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:05:57.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.518][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.523][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172414340].
biodb.DEBUG[2024-12-21 16:05:57.524][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:57.525][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:57.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:57.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:57.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:57.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:57.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:57.537][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.542][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.547][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:05:57.548][private$selectFields]
biodb.TRACE[2024-12-21 16:05:57.549][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:05:57.550][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:05:57.551][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:05:57.552][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.554][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.556][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.557][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.558][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.561][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.562][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:05:57.563][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:05:57.564][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.565][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.568][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.569][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:05:57.570][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.581][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.586][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:57.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:57.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:57.591][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172414267].
biodb.DEBUG[2024-12-21 16:05:57.592][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:05:57.593][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:05:57.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:57.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:57.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:57.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:57.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:57.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:57.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:57.615][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-21 16:05:57.619][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:05:57.620][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:05:57.622][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-12-21 16:05:57.701][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-12-21 16:05:57.702][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-12-21 16:05:57.704][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-12-21 16:05:57.706][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-12-21 16:05:57.754][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-21 16:05:57.758][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content"
biodb.TRACE[2024-12-21 16:05:57.763][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.request"
biodb.DEBUG[2024-12-21 16:05:57.767][private$loadEntries] Creating entries from ids [3]: "172529292, 172529260, 172524779".
biodb.DEBUG[2024-12-21 16:05:57.768][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-12-21 16:05:57.771][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172529292, 172529260, 172524779".
biodb.TRACE[2024-12-21 16:05:57.772][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-12-21 16:05:57.774][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-21 16:05:57.775][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-12-21 16:05:57.777][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-21 16:05:57.778][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-21 16:05:57.779][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-12-21 16:05:57.781][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-12-21 16:05:57.783][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172529292,172529260,172524779/XML".
biodb.DEBUG[2024-12-21 16:05:57.785][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:05:57.787][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:05:57.789][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172529292,172529260,172524779/XML".
biodb.TRACE[2024-12-21 16:05:57.899][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172529292,172529260,172524779/XML).
biodb.TRACE[2024-12-21 16:05:58.038][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172529292.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172529260.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172524779.xml"
biodb.DEBUG[2024-12-21 16:05:58.042][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-21 16:05:58.044][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-12-21 16:05:58.046][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-12-21 16:05:58.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:58.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:58.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:58.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:58.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:58.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:58.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:58.063][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:58.064][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:58.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.066][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:58.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:58.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.073][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:58.074][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:58.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.077][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:58.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:58.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.083][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:58.084][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:58.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.087][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.088][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:58.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:58.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.093][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:58.094][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:58.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.097][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:58.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:58.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.103][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:58.104][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:58.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.107][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:58.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:58.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.113][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:58.114][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:58.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.117][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.118][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:58.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:58.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.123][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:05:58.124][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:58.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.126][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.129][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:05:58.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:58.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.135][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:58.137][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:58.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.139][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.141][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:58.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:58.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.148][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:58.149][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:58.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.151][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:58.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:58.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.158][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:58.160][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:58.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.163][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:58.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:58.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.169][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:58.170][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:58.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.173][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.174][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:58.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:58.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.179][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:05:58.181][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:58.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.183][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:05:58.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:58.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.189][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:58.191][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:58.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.193][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.194][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:58.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:58.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.199][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:58.201][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:58.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.203][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.204][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:58.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:58.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.209][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:05:58.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:58.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:58.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:58.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.219][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:58.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:58.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.224][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:05:58.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:58.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:58.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:58.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:58.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:58.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.238][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:05:58.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:58.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:58.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:58.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.247][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:58.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:58.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.252][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:05:58.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:58.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:58.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:58.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.262][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:58.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:58.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.267][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:05:58.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:58.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.271][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:58.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:58.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.276][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:58.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:58.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.281][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:58.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:58.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.286][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:58.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:58.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.291][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:58.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:58.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:58.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:58.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:58.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:58.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:58.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:58.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:58.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:58.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:58.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:58.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:58.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:58.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:58.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:58.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:58.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:58.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:58.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:58.335][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:58.336][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:58.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.338][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:58.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:58.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.345][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:58.346][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:58.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.348][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:58.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:58.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.355][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:58.356][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:58.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.358][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:58.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:58.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.375][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:58.377][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:58.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.380][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.382][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:58.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:58.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.387][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:58.388][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:58.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.391][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:58.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:58.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.397][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:58.398][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:58.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.401][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:58.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:58.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.407][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:05:58.409][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:58.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.411][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.412][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:05:58.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:58.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.417][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:58.419][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:58.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.421][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.422][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:58.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:58.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.427][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:58.429][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:58.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.431][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.432][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:58.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:58.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.437][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:58.439][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:58.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.441][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:58.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:58.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.447][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:58.449][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:58.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.451][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.452][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:58.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:58.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.457][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:05:58.459][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:58.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.461][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:05:58.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:58.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.467][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:58.468][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:58.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.471][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.472][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:58.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:58.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.477][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:58.478][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:58.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.481][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.482][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:58.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:58.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.487][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:05:58.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:58.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:58.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:58.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:58.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:58.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.502][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:05:58.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:58.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:58.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:58.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:58.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:58.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.516][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:05:58.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:58.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:58.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:58.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:58.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:58.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.530][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:05:58.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:58.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:58.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:58.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:58.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:58.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.545][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:05:58.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:58.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:58.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:58.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:58.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:58.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.559][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:58.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:58.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:58.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:58.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.569][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:58.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:58.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:58.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:58.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:58.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:58.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:58.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:58.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:58.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:58.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:58.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:58.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:58.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:58.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:58.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:58.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:58.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:58.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:58.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:58.613][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:58.614][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:58.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.616][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:58.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:58.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.623][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:58.624][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:58.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.626][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.628][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:58.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:58.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.633][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:58.634][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:58.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.636][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:58.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:58.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.642][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:58.644][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:58.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.646][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:58.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:58.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.652][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:58.654][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:58.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.656][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:58.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:58.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.662][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:58.663][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:58.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.666][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.667][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:58.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:58.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.672][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:05:58.673][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:58.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.675][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.677][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:05:58.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:58.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.682][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:58.683][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:58.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.685][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.687][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:58.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:58.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.692][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:58.693][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:58.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.695][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.697][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:58.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:58.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.702][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:58.703][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:58.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.705][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:58.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:58.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.712][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:58.714][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:58.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.717][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.718][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:58.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:58.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.723][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:05:58.724][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:58.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.727][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:05:58.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:58.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.733][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:58.734][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:58.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.737][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.738][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:58.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:58.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.743][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:58.745][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:58.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.747][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.748][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:58.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:58.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.753][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:05:58.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:58.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:58.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:58.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:58.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:58.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.768][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:05:58.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:58.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:58.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:58.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.784][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:58.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:58.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.789][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:05:58.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:58.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:58.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:58.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:58.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:58.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.803][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:05:58.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:58.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.808][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:58.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:58.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:58.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:58.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.818][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:05:58.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:58.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:58.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:58.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.827][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:58.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:58.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.832][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:58.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:58.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.837][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:58.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:58.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.842][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:58.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:58.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:58.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:58.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:58.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:58.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:58.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:58.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:58.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:58.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:58.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:58.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:58.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:58.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:58.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:58.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:58.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:58.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:58.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:58.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:58.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:58.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:58.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:58.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:58.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:58.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:58.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:58.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:58.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:58.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:58.914][self$createEntryFromContent] Accession numbers: 172529292, 172529260, 172524779.
biodb.DEBUG[2024-12-21 16:05:58.935][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:05:58.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:58.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:58.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:58.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:58.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:58.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:58.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:58.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:58.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:58.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.974][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:58.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:58.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.979][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:05:58.980][private$selectFields]
biodb.TRACE[2024-12-21 16:05:58.982][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:05:58.983][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:05:58.984][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:05:58.985][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:58.986][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:58.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.989][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.990][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:58.991][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:58.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:58.993][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:58.995][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:05:58.996][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:05:58.997][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:58.998][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:58.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.000][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.002][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:05:59.003][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.013][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.018][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529292].
biodb.DEBUG[2024-12-21 16:05:59.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:59.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:59.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:59.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:59.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:59.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:59.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:59.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.037][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.042][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:05:59.043][private$selectFields]
biodb.TRACE[2024-12-21 16:05:59.044][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:05:59.045][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:05:59.047][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:05:59.048][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.049][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.051][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.052][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.054][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.056][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.057][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:05:59.058][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:05:59.060][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.061][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.063][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.064][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:05:59.066][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.075][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.080][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529260].
biodb.DEBUG[2024-12-21 16:05:59.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:59.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:59.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:59.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:59.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:59.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:59.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:59.095][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.100][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.105][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:05:59.106][private$selectFields]
biodb.TRACE[2024-12-21 16:05:59.107][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:05:59.108][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:05:59.109][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:05:59.110][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.111][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.114][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.115][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.116][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.118][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.120][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:05:59.121][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:05:59.122][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.123][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.125][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.127][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:05:59.128][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.140][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.145][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172524779].
biodb.DEBUG[2024-12-21 16:05:59.146][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:05:59.147][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-21 16:05:59.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:59.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:59.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:59.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:59.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:59.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:59.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:59.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:59.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:59.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:59.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:59.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:59.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:59.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:59.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:59.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:59.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:59.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:59.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:59.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:59.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:59.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:59.260][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:59.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:05:59.268][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-21 16:05:59.272][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:05:59.273][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-12-21 16:05:59.275][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:05:59.288][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-12-21 16:05:59.290][private$loadEntries] Creating entries from ids [3]: "172431267, 172417440, 172414169".
biodb.DEBUG[2024-12-21 16:05:59.291][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-12-21 16:05:59.293][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172431267, 172417440, 172414169".
biodb.TRACE[2024-12-21 16:05:59.295][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-12-21 16:05:59.335][loadFileContents] Loaded 3 files from cache: [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172431267.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172417440.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172414169.xml".
biodb.DEBUG[2024-12-21 16:05:59.337][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-12-21 16:05:59.338][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-12-21 16:05:59.340][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-12-21 16:05:59.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:59.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:59.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:59.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:59.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:59.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:59.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:59.357][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:59.358][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:59.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.360][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:59.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:59.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.367][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:59.368][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:59.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.370][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:59.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:59.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.376][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:59.378][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:59.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.380][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.382][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:59.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:59.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.386][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:59.388][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:59.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.390][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:59.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:59.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.396][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:59.398][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:59.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.400][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.401][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:59.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:59.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.406][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:59.408][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:59.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.410][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.411][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:59.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:59.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.416][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:05:59.417][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:59.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.420][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.421][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:05:59.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:59.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.426][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:59.427][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:59.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.430][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.431][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:59.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:59.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.436][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:59.437][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:59.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.439][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.441][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:59.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:59.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.446][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:59.447][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:59.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.449][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:59.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:59.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.456][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:59.457][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:59.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.459][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.461][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:59.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:59.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.465][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:05:59.467][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:59.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.469][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:05:59.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:59.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.475][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:59.476][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:59.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.479][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.480][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:59.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:59.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.485][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:59.486][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:59.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.488][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.490][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:59.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:59.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.495][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:05:59.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:59.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:59.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:59.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:59.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:59.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.509][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:05:59.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:59.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:59.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:59.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:59.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:59.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.523][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:05:59.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:59.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:59.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:59.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:59.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:59.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.538][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:05:59.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:59.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:59.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:59.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.547][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:59.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:59.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.552][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:05:59.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:59.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:59.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:59.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.561][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:59.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:59.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.573][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:59.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:59.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.583][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:59.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:59.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:59.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:59.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:59.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:59.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:59.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:59.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:59.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:59.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:59.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:59.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:59.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:59.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:59.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:59.627][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:59.628][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:59.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.630][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:59.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:59.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.637][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:59.638][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:59.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.640][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:59.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:59.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.646][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:59.648][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:59.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.650][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:59.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:59.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.656][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:59.658][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:59.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.660][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:59.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:59.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.666][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:59.667][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:59.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.670][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:59.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:59.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.676][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:59.677][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:59.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.679][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:59.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:59.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.686][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:05:59.687][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:59.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.689][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.691][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:05:59.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:59.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.696][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:59.697][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:59.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.700][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.701][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:59.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:59.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.706][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:59.707][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:59.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.710][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:05:59.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:05:59.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.716][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:59.717][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:59.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.720][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:05:59.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:05:59.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.726][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:59.727][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:59.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.729][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.731][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:05:59.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:05:59.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.736][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:05:59.737][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:59.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.740][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:05:59.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:05:59.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.746][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:59.747][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:59.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.750][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.751][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:59.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:05:59.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.756][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:59.757][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:59.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.760][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.761][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:59.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:05:59.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.766][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:05:59.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:59.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.771][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:59.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:59.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:59.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:59.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.780][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:05:59.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:59.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.785][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:59.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:59.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.790][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:59.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:59.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.795][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:05:59.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:59.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:59.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:59.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:59.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:59.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.809][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:05:59.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:59.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:59.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:59.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:59.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:59.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.823][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:05:59.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:59.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:59.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:59.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:59.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:59.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.837][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:05:59.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:05:59.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.842][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.847][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:59.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:59.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:05:59.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:59.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:59.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:59.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:59.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:59.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:59.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:05:59.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:05:59.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:05:59.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:05:59.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:05:59.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:05:59.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:05:59.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:05:59.891][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:59.892][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:59.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.895][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:05:59.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:05:59.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.901][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:59.902][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:59.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.905][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:59.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:05:59.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.911][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:59.913][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:59.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.915][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:59.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:05:59.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.921][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:59.923][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:59.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.925][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:59.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:05:59.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.931][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:59.933][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:59.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.935][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:59.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:05:59.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.941][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:59.943][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:59.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.945][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.947][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:59.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:05:59.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.951][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:05:59.953][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:59.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.955][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.956][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:05:59.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:05:59.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.961][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:59.963][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:59.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.965][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:05:59.966][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:05:59.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:05:59.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:05:59.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.003][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:00.004][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:00.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.007][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:00.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:00.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.013][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:00.014][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:00.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.017][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:00.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:00.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.023][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:00.025][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:00.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.027][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.029][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:00.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:00.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.034][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:00.035][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:00.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.037][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:00.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:00.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.044][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:00.045][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:00.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.048][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.049][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:00.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:00.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.054][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:00.055][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:00.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.058][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.059][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:00.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:00.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.064][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:06:00.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:00.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:00.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:00.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.074][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:00.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:00.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.079][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:06:00.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:00.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:00.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:00.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.088][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:00.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:00.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.093][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:06:00.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:00.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.099][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:00.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:00.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:00.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:00.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.108][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:06:00.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:00.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.113][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:00.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:00.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.118][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:00.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:00.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.123][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:06:00.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:00.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.128][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:00.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:00.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:00.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:00.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.138][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:00.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:00.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.148][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:00.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:00.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:00.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:00.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:00.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:00.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:00.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:00.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:00.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:00.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:00.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:00.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:00.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:00.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:00.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:00.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:00.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:00.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:00.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:00.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:00.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:00.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:00.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:00.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:00.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:00.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:00.220][self$createEntryFromContent] Accession numbers: 172431267, 172417440, 172414169.
biodb.DEBUG[2024-12-21 16:06:00.221][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:00.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:00.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:00.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:00.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:00.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:00.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:00.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:00.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.246][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:00.247][private$selectFields]
biodb.TRACE[2024-12-21 16:06:00.248][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:00.249][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:00.250][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:00.251][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.253][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.255][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.256][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.257][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.260][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.261][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:00.262][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:00.263][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.265][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.267][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.268][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:00.269][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.274][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.279][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.284][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172431267].
biodb.DEBUG[2024-12-21 16:06:00.285][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:00.286][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:00.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:00.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:00.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:00.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:00.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:00.299][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.303][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.308][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:00.309][private$selectFields]
biodb.TRACE[2024-12-21 16:06:00.310][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:00.312][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:00.313][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:00.314][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.315][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.317][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.319][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.320][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.322][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.323][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:00.325][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:00.326][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.327][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.329][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.330][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:00.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.337][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.341][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.346][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417440].
biodb.DEBUG[2024-12-21 16:06:00.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:00.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:00.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:00.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:00.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:00.359][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:00.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:00.361][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.366][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.371][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:00.372][private$selectFields]
biodb.TRACE[2024-12-21 16:06:00.373][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:00.374][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:00.375][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:00.377][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.378][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.380][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.381][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.383][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.385][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.386][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:00.387][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:00.389][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.390][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.392][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.393][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:00.395][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.399][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.404][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:00.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.415][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172414169].
biodb.DEBUG[2024-12-21 16:06:00.417][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:00.418][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:00.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:00.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:00.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:00.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:00.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:00.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:00.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:00.440][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:00.444][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:06:00.445][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:06:00.447][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-12-21 16:06:00.518][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-12-21 16:06:00.519][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-12-21 16:06:00.521][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-12-21 16:06:00.523][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-12-21 16:06:00.574][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-21 16:06:00.577][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content"
biodb.TRACE[2024-12-21 16:06:00.582][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.request"
biodb.DEBUG[2024-12-21 16:06:00.585][private$loadEntries] Creating entries from ids [3]: "172634706, 172629519, 172621093".
biodb.DEBUG[2024-12-21 16:06:00.587][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-12-21 16:06:00.588][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172634706, 172629519, 172621093".
biodb.TRACE[2024-12-21 16:06:00.590][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-12-21 16:06:00.591][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-21 16:06:00.593][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-12-21 16:06:00.594][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-21 16:06:00.595][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-21 16:06:00.596][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-12-21 16:06:00.612][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-12-21 16:06:00.614][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172634706,172629519,172621093/XML".
biodb.DEBUG[2024-12-21 16:06:00.617][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:06:00.618][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:06:00.620][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172634706,172629519,172621093/XML".
biodb.TRACE[2024-12-21 16:06:00.693][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172634706,172629519,172621093/XML).
biodb.TRACE[2024-12-21 16:06:00.788][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172634706.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172629519.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172621093.xml"
biodb.DEBUG[2024-12-21 16:06:00.792][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-21 16:06:00.794][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-12-21 16:06:00.796][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-12-21 16:06:00.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:00.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:00.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:00.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:00.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:00.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:00.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:00.813][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:00.814][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:00.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.817][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:00.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:00.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.823][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:00.824][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:00.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.827][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:00.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:00.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.833][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:00.835][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:00.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.837][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.839][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:00.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:00.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.844][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:00.845][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:00.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.847][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:00.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:00.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.854][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:00.855][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:00.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.857][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:00.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:00.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.864][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:00.865][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:00.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.867][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.869][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:00.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:00.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.874][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:00.875][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:00.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.878][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.879][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:00.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:00.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.884][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:00.885][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:00.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.888][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.889][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:00.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:00.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.894][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:00.896][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:00.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.898][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:00.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:00.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.904][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:00.905][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:00.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.908][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:00.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:00.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.914][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:00.915][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:00.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.918][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.919][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:00.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:00.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.924][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:00.925][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:00.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.928][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:00.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:00.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.934][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:00.935][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:00.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.938][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.939][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:00.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:00.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.944][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:00.945][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:00.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.948][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.949][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:00.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:00.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.954][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:06:00.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:00.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.959][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:00.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:00.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:00.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:00.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.969][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:06:00.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:00.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:00.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:00.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:00.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:00.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.983][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:06:00.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:00.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.988][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:00.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:00.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:00.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:00.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:00.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:00.997][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:06:00.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:01.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:01.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:01.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:01.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:01.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.012][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:06:01.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:01.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:01.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:01.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:01.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:01.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.026][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:01.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:01.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.031][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.036][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:01.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:01.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.046][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:01.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:01.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:01.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:01.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:01.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:01.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:01.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:01.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:01.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:01.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:01.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:01.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:01.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:01.081][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:01.082][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:01.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.084][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:01.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:01.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.091][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:01.092][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:01.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.094][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:01.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:01.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.101][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:01.111][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:01.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.114][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.116][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:01.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:01.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.121][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:01.122][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:01.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.124][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.126][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:01.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:01.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.132][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:01.133][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:01.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.136][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:01.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:01.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.143][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:01.144][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:01.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.146][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:01.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:01.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.153][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:01.154][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:01.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.157][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.158][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:01.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:01.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.163][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:01.164][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:01.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.167][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.168][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:01.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:01.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.173][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:01.174][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:01.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.177][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.178][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:01.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:01.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.183][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:01.184][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:01.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.187][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:01.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:01.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.193][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:01.194][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:01.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.197][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.198][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:01.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:01.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.203][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:01.204][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:01.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.207][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:01.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:01.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.213][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:01.215][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:01.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.217][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.218][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:01.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:01.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.223][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:01.225][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:01.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.227][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.229][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:01.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:01.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.234][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:06:01.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:01.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.239][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:01.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:01.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:01.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:01.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.248][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:06:01.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:01.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:01.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:01.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.258][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:01.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:01.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.263][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:06:01.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:01.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.267][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:01.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:01.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:01.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:01.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.277][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:06:01.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:01.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.282][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:01.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:01.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.287][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:01.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:01.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.291][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:06:01.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:01.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:01.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:01.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.301][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:01.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:01.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:01.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:01.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.311][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.316][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:01.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:01.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.325][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:01.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:01.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:01.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:01.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:01.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:01.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:01.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:01.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:01.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:01.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:01.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:01.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:01.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:01.359][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:01.361][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:01.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.363][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:01.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:01.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.370][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:01.371][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:01.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.373][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.375][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:01.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:01.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.379][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:01.381][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:01.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.383][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:01.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:01.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.389][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:01.391][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:01.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.393][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.395][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:01.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:01.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.399][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:01.401][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:01.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.403][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:01.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:01.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.409][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:01.411][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:01.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.413][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.414][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:01.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:01.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.419][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:01.421][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:01.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.423][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.424][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:01.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:01.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.429][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:01.430][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:01.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.433][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.434][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:01.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:01.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.439][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:01.440][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:01.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.443][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:01.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:01.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.449][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:01.450][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:01.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.452][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:01.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:01.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.459][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:01.460][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:01.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.462][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.464][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:01.465][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:01.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.467][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:01.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:01.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.474][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:01.475][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:01.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.477][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.479][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:01.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:01.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.484][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:01.485][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:01.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.487][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.489][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:01.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:01.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.494][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:06:01.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:01.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:01.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:01.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:01.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:01.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.508][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:06:01.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:01.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:01.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:01.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:01.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:01.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.529][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:06:01.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:01.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:01.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:01.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:01.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:01.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.544][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:06:01.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:01.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:01.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:01.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.555][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:01.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:01.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.559][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:06:01.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:01.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.564][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:01.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:01.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.569][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:01.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:01.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.574][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:01.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:01.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.584][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:01.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:01.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.593][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:01.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:01.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:01.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:01.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:01.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:01.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:01.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:01.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:01.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:01.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:01.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:01.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:01.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:01.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:01.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:01.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:01.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:01.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:01.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:01.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:01.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:01.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:01.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:01.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:01.656][self$createEntryFromContent] Accession numbers: 172634706, 172629519, 172621093.
biodb.DEBUG[2024-12-21 16:06:01.657][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:01.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:01.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:01.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:01.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:01.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:01.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:01.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:01.672][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.677][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.682][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:01.683][private$selectFields]
biodb.TRACE[2024-12-21 16:06:01.684][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:01.685][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:01.687][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:01.688][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.689][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.691][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.693][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.694][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.696][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.697][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:01.698][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:01.700][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.701][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.703][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.704][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:01.706][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.715][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.720][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634706].
biodb.DEBUG[2024-12-21 16:06:01.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:01.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:01.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:01.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:01.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:01.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:01.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:01.735][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.740][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.744][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:01.746][private$selectFields]
biodb.TRACE[2024-12-21 16:06:01.747][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:01.748][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:01.749][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:01.750][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.751][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.754][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.755][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.756][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.758][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.760][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:01.761][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:01.762][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.763][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.765][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.767][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:01.768][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.773][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.777][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.782][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172629519].
biodb.DEBUG[2024-12-21 16:06:01.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:01.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:01.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:01.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:01.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:01.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:01.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:01.797][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.802][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.807][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:01.808][private$selectFields]
biodb.TRACE[2024-12-21 16:06:01.809][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:01.810][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:01.811][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:01.812][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.814][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.816][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.817][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.818][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.821][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.822][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:01.823][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:01.824][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.825][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.828][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.829][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:01.830][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.835][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:01.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.845][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172621093].
biodb.DEBUG[2024-12-21 16:06:01.846][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:01.847][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-21 16:06:01.857][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-21 16:06:01.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-21 16:06:01.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.862][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-21 16:06:01.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-21 16:06:01.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-21 16:06:01.872][biodb::testThat]
biodb.INFO [2024-12-21 16:06:01.873][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-12-21 16:06:01.874][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:06:01.875][biodb::testThat]
biodb.TRACE[2024-12-21 16:06:01.879][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-21 16:06:01.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-21 16:06:01.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.883][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-21 16:06:01.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-21 16:06:01.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:01.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:01.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:01.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:01.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:01.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:01.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:01.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:01.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:01.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:01.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:01.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:01.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:01.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:01.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:01.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:01.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:01.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:01.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:01.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:01.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:01.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:01.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:01.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:01.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:01.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:01.955][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364:204.2430636[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:01.959][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:06:01.960][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aa9cb23a1eb4b2596e7c242b1c35f744".
biodb.TRACE[2024-12-21 16:06:01.962][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:06:01.974][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/aa9cb23a1eb4b2596e7c242b1c35f744.content".
biodb.DEBUG[2024-12-21 16:06:01.977][private$loadEntries] Creating entries from ids [3]: "172394297, 172346151, 172345958".
biodb.DEBUG[2024-12-21 16:06:01.978][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-12-21 16:06:01.980][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172394297, 172346151, 172345958".
biodb.TRACE[2024-12-21 16:06:01.982][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-12-21 16:06:02.018][loadFileContents] Loaded 3 files from cache: [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172394297.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172346151.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172345958.xml".
biodb.DEBUG[2024-12-21 16:06:02.020][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-12-21 16:06:02.021][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-12-21 16:06:02.023][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-12-21 16:06:02.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:02.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:02.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:02.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:02.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:02.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:02.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:02.040][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:02.041][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:02.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.044][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:02.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:02.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.050][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:02.051][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:02.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.054][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.055][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:02.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:02.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.060][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:02.061][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:02.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.064][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:02.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:02.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.070][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:02.071][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:02.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.074][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:02.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:02.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.080][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:02.081][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:02.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.084][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:02.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:02.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.090][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:02.092][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:02.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.094][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:02.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:02.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.100][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:02.102][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:02.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.104][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.106][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:02.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:02.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.111][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:02.112][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:02.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.114][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.116][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:02.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:02.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.121][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:02.122][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:02.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.124][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:02.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:02.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.132][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:02.133][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:02.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.135][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.137][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:02.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:02.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.142][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:02.143][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:02.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.145][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.147][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:02.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:02.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.152][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:02.153][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:02.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.155][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:02.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:02.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.162][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:02.163][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:02.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.165][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.167][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:02.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:02.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.172][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:02.173][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:02.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.175][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.177][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:02.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:02.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.182][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:06:02.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:02.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.187][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:02.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:02.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.191][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:02.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:02.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.196][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:06:02.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:02.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:02.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:02.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:02.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:02.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.211][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:06:02.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:02.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:02.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:02.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:02.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:02.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.225][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:06:02.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:02.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:02.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:02.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.234][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:02.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:02.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.239][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:06:02.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:02.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.244][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:02.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:02.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.249][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:02.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:02.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.253][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:02.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:02.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.258][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.263][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:02.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:02.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:02.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:02.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:02.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:02.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:02.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:02.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:02.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:02.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:02.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:02.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:02.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:02.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:02.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:02.307][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:02.308][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:02.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.310][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:02.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:02.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.317][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:02.318][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:02.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.320][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:02.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:02.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.327][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:02.328][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:02.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.330][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.332][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:02.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:02.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.337][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:02.338][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:02.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.341][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.342][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:02.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:02.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.347][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:02.348][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:02.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.351][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:02.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:02.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.357][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:02.359][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:02.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.361][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:02.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:02.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.367][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:02.369][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:02.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.371][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.373][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:02.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:02.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.378][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:02.379][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:02.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.381][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.383][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:02.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:02.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.388][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:02.389][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:02.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.391][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:02.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:02.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.405][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:02.406][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:02.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.408][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:02.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:02.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.415][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:02.416][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:02.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.419][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.420][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:02.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:02.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.425][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:02.427][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:02.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.429][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:02.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:02.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.436][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:02.437][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:02.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.439][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.441][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:02.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:02.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.446][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:02.447][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:02.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.450][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:02.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:02.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.456][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:06:02.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:02.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:02.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:02.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:02.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:02.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.471][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:06:02.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:02.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:02.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:02.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:02.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:02.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.485][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:06:02.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:02.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:02.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:02.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.495][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:02.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:02.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.500][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:06:02.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:02.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:02.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:02.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:02.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:02.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.514][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:06:02.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:02.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:02.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:02.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:02.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:02.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.529][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:02.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:02.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.534][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.538][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:02.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:02.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.548][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:02.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:02.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:02.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:02.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:02.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:02.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:02.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:02.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:02.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:02.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:02.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:02.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:02.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:02.582][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:02.583][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:02.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.586][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:02.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:02.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.592][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:02.593][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:02.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.596][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:02.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:02.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.602][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:02.603][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:02.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.606][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:02.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:02.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.612][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:02.613][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:02.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.616][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:02.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:02.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.622][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:02.623][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:02.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.625][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:02.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:02.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.632][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:02.633][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:02.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.635][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.637][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:02.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:02.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.642][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:02.643][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:02.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.645][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.647][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:02.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:02.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.652][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:02.653][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:02.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.655][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.657][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:02.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:02.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.662][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:02.663][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:02.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.665][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:02.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:02.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.671][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:02.673][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:02.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.675][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.676][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:02.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:02.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.681][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:02.683][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:02.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.685][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.686][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:02.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:02.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.691][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:02.692][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:02.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.695][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:02.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:02.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.701][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:02.702][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:02.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.705][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:02.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:02.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.711][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:02.712][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:02.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.714][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.716][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:02.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:02.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.721][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:06:02.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:02.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:02.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:02.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:02.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:02.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.735][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:06:02.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:02.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.740][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:02.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:02.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:02.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:02.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.750][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:06:02.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:02.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:02.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:02.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:02.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:02.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.764][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:06:02.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:02.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:02.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:02.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:02.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:02.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.778][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:06:02.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:02.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:02.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:02.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:02.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:02.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.793][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:02.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:02.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.798][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.802][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:02.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:02.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.819][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:02.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:02.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:02.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:02.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:02.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:02.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:02.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:02.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:02.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:02.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:02.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:02.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:02.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:02.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:02.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:02.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:02.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:02.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:02.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:02.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:02.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:02.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:02.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:02.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:02.882][self$createEntryFromContent] Accession numbers: 172394297, 172346151, 172345958.
biodb.DEBUG[2024-12-21 16:06:02.883][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:02.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:02.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:02.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:02.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:02.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:02.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:02.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:02.898][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.903][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.907][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:02.909][private$selectFields]
biodb.TRACE[2024-12-21 16:06:02.910][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:02.911][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:02.912][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:02.914][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.915][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.917][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.918][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.920][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.922][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.923][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:02.924][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:02.925][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.927][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.929][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.930][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:02.931][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.936][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.941][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.946][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172394297].
biodb.DEBUG[2024-12-21 16:06:02.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:02.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:02.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:02.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:02.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:02.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:02.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:02.961][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.966][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.971][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:02.972][private$selectFields]
biodb.TRACE[2024-12-21 16:06:02.973][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:02.974][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:02.975][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:02.976][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.978][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.980][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.981][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.982][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.985][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.986][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:02.987][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:02.988][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.989][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.992][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.993][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:02.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:02.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:02.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:02.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:03.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:03.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.003][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:03.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:03.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.009][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172346151].
biodb.DEBUG[2024-12-21 16:06:03.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:03.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:03.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:03.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:03.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:03.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:03.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:03.023][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:03.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:03.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.028][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:03.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:03.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.033][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:03.034][private$selectFields]
biodb.TRACE[2024-12-21 16:06:03.035][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:03.036][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:03.037][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:03.038][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:03.040][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:03.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.042][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.043][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:03.044][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:03.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.046][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.048][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:03.049][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:03.050][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:03.051][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:03.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.053][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.055][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:03.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:03.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:03.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.061][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:03.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:03.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.065][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:03.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:03.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.070][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172345958].
biodb.DEBUG[2024-12-21 16:06:03.072][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:03.073][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:03.075][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:03.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:03.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:03.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:03.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:03.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:03.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:03.094][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715:226.19339285[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:03.098][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:06:03.099][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:06:03.101][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-12-21 16:06:03.189][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-12-21 16:06:03.191][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-12-21 16:06:03.193][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-12-21 16:06:03.194][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-12-21 16:06:03.246][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-21 16:06:03.249][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.content"
biodb.TRACE[2024-12-21 16:06:03.255][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.request"
biodb.DEBUG[2024-12-21 16:06:03.258][private$loadEntries] Creating entries from ids [2]: "172415476, 172413321".
biodb.DEBUG[2024-12-21 16:06:03.259][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-12-21 16:06:03.261][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172415476, 172413321".
biodb.TRACE[2024-12-21 16:06:03.263][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-12-21 16:06:03.264][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-21 16:06:03.266][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-12-21 16:06:03.267][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-21 16:06:03.268][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-21 16:06:03.269][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-12-21 16:06:03.270][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-12-21 16:06:03.273][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172415476,172413321/XML".
biodb.DEBUG[2024-12-21 16:06:03.275][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:06:03.276][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:06:03.278][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172415476,172413321/XML".
biodb.TRACE[2024-12-21 16:06:03.424][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172415476,172413321/XML).
biodb.TRACE[2024-12-21 16:06:03.548][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172415476.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172413321.xml"
biodb.DEBUG[2024-12-21 16:06:03.553][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-21 16:06:03.554][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-12-21 16:06:03.556][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-12-21 16:06:03.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:03.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:03.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:03.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:03.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:03.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:03.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:03.572][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:03.574][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:03.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.576][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:03.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:03.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.582][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:03.584][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:03.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.586][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.588][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:03.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:03.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.592][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:03.594][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:03.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.596][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.598][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:03.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:03.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.603][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:03.604][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:03.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.606][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:03.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:03.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.613][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:03.614][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:03.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.616][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:03.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:03.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.623][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:03.634][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:03.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.636][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:03.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:03.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.643][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:03.645][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:03.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.647][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.649][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:03.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:03.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.654][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:03.655][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:03.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.657][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.659][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:03.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:03.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.664][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:03.665][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:03.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.668][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:03.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:03.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.674][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:03.675][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:03.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.678][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.679][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:03.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:03.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.684][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:03.686][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:03.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.688][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.689][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:03.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:03.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.694][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:03.695][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:03.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.698][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:03.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:03.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.704][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:03.705][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:03.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.708][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.709][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:03.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:03.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.714][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:03.715][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:03.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.717][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.719][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:03.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:03.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.724][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:06:03.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:03.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:03.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:03.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:03.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:03.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.738][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:06:03.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:03.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.743][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:03.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:03.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:03.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:03.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.753][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:06:03.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:03.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:03.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:03.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.762][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:03.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:03.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.767][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:06:03.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:03.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:03.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:03.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:03.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:03.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.781][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:06:03.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:03.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:03.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:03.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.791][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:03.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:03.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.796][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:03.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:03.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.801][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:03.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:03.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:03.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:03.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:03.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:03.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.815][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:03.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:03.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:03.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:03.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:03.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:03.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:03.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:03.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:03.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:03.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:03.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:03.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:03.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:03.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:03.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:03.849][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:03.851][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:03.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.853][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:03.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:03.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.859][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:03.860][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:03.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.863][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:03.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:03.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.869][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:03.870][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:03.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.872][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:03.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:03.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.879][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:03.880][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:03.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.882][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:03.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:03.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.889][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:03.890][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:03.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.892][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:03.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:03.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.899][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:03.900][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:03.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.902][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:03.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:03.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.908][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:03.910][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:03.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.912][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.913][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:03.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:03.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.918][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:03.920][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:03.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.922][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.923][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:03.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:03.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.928][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:03.929][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:03.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.932][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.933][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:03.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:03.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.938][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:03.939][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:03.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.942][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:03.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:03.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.948][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:03.949][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:03.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.951][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.953][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:03.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:03.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.958][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:03.959][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:03.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.961][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:03.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:03.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.968][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:03.969][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:03.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.971][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.973][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:03.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:03.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.977][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:03.979][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:03.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.981][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.982][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:03.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:03.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.987][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:06:03.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:03.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:03.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:03.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:03.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:03.997][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:03.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:03.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.002][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:06:04.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:04.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:04.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:04.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:04.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:04.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.016][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:06:04.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:04.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:04.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:04.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:04.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:04.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.030][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:06:04.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:04.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.042][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:04.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:04.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.047][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:04.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:04.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.052][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:06:04.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:04.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:04.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:04.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.061][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:04.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:04.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.066][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:04.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:04.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.071][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.076][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:04.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:04.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.086][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:04.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:04.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:04.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:04.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:04.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:04.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:04.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:04.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:04.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:04.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:04.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:04.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:04.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:04.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:04.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:04.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:04.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:04.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:04.135][self$createEntryFromContent] Accession numbers: 172415476, 172413321.
biodb.DEBUG[2024-12-21 16:06:04.136][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:04.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:04.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:04.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:04.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:04.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:04.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:04.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:04.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.167][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.188][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:04.190][private$selectFields]
biodb.TRACE[2024-12-21 16:06:04.191][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:04.192][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:04.193][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:04.194][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.195][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.198][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.199][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.200][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.202][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.204][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:04.213][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:04.214][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.215][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.217][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.219][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:04.220][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.224][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.234][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172524779].
biodb.DEBUG[2024-12-21 16:06:04.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:04.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:04.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:04.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:04.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:04.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:04.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:04.250][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.254][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.259][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:04.260][private$selectFields]
biodb.TRACE[2024-12-21 16:06:04.262][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:04.263][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:04.264][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:04.265][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.266][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.268][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.270][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.271][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.273][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.275][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:04.276][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:04.277][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.278][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.281][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.282][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:04.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.288][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.293][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.298][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172415476].
biodb.DEBUG[2024-12-21 16:06:04.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:04.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:04.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:04.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:04.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:04.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:04.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:04.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.322][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:04.323][private$selectFields]
biodb.TRACE[2024-12-21 16:06:04.324][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:04.325][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:04.326][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:04.328][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.329][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.331][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.332][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.333][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.336][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.337][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:04.338][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:04.339][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.340][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.343][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.344][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:04.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.355][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.360][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172413321].
biodb.DEBUG[2024-12-21 16:06:04.361][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:04.362][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-21 16:06:04.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:04.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:04.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:04.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:04.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:04.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:04.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:04.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:04.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:04.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:04.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:04.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:04.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:04.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:04.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:04.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:04.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:04.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:04.423][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:04.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:04.431][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:04.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:04.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:04.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:04.442][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254:204.126644913746[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:04.446][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:06:04.448][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3123cd8cb57ce8b130489fc490c416f0".
biodb.TRACE[2024-12-21 16:06:04.449][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:06:04.462][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/3123cd8cb57ce8b130489fc490c416f0.content".
biodb.DEBUG[2024-12-21 16:06:04.464][private$loadEntries] Creating entries from ids [2]: "172413865, 172413863".
biodb.DEBUG[2024-12-21 16:06:04.466][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-12-21 16:06:04.468][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172413865, 172413863".
biodb.TRACE[2024-12-21 16:06:04.469][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2024-12-21 16:06:04.495][loadFileContents] Loaded 2 files from cache: [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172413865.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172413863.xml".
biodb.DEBUG[2024-12-21 16:06:04.497][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-12-21 16:06:04.499][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-12-21 16:06:04.500][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-12-21 16:06:04.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:04.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:04.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:04.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:04.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:04.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:04.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:04.517][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:04.519][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:04.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.521][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:04.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:04.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.527][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:04.529][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:04.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.531][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:04.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:04.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.538][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:04.539][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:04.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.541][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:04.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:04.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.548][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:04.549][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:04.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.551][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.553][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:04.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:04.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.558][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:04.559][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:04.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.562][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.563][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:04.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:04.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.568][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:04.570][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:04.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.572][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:04.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:04.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.579][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:04.580][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:04.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.582][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.584][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:04.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:04.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.589][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:04.590][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:04.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.593][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.594][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:04.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:04.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.599][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:04.601][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:04.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.603][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:04.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:04.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.609][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:04.611][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:04.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.613][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:04.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:04.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.620][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:04.621][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:04.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.623][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.625][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:04.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:04.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.630][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:04.631][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:04.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.633][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:04.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:04.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.640][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:04.641][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:04.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.643][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.645][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:04.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:04.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.650][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:04.651][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:04.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.654][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.655][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:04.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:04.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.660][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:06:04.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:04.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.665][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:04.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:04.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:04.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:04.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.675][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:06:04.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:04.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.680][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:04.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:04.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.684][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:04.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:04.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.689][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:06:04.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:04.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.694][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:04.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:04.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:04.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:04.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.704][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:06:04.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:04.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:04.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:04.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.713][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:04.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:04.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.718][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:06:04.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:04.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:04.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:04.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.728][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:04.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:04.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.733][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:04.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:04.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.743][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:04.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:04.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.752][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:04.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:04.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:04.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:04.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:04.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:04.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:04.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:04.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:04.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:04.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:04.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:04.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:04.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:04.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:04.787][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:04.788][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:04.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.791][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:04.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:04.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.797][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:04.799][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:04.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.801][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:04.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:04.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.808][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:04.809][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:04.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.811][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:04.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:04.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.818][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:04.819][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:04.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.821][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:04.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:04.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.828][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:04.829][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:04.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.831][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:04.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:04.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.838][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:04.839][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:04.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.842][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:04.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:04.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.848][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:04.849][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:04.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.852][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.853][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:04.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:04.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.858][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:04.860][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:04.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.862][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.863][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:04.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:04.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.868][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:04.870][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:04.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.879][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.880][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:04.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:04.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.885][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:04.887][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:04.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.889][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.890][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:04.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:04.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.895][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:04.897][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:04.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.899][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.901][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:04.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:04.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.906][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:04.907][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:04.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.910][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:04.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:04.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.916][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:04.918][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:04.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.920][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.922][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:04.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:04.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.926][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:04.928][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:04.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.930][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.932][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:04.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:04.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.937][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:06:04.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:04.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.941][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:04.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:04.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.946][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:04.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:04.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.951][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:06:04.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:04.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.956][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:04.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:04.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:04.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:04.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.966][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:06:04.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:04.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:04.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:04.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.975][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:04.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:04.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.980][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:06:04.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:04.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:04.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:04.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:04.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:04.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:04.995][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:06:04.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:04.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:04.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.000][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:05.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:05.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:05.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:05.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.009][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:05.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:05.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.014][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.019][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:05.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:05.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.029][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:05.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:05.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:05.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:05.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:05.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:05.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:05.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:05.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:05.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:05.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:05.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:05.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:05.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:05.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:05.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:05.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:05.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:05.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:05.077][self$createEntryFromContent] Accession numbers: 172413865, 172413863.
biodb.DEBUG[2024-12-21 16:06:05.078][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:05.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:05.081][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:05.082][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:05.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:05.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:05.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:05.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:05.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.103][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:05.104][private$selectFields]
biodb.TRACE[2024-12-21 16:06:05.105][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:05.106][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:05.108][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:05.109][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.110][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.112][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.113][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.115][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.117][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.118][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:05.119][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:05.121][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.122][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.124][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.125][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:05.126][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.132][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.137][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.142][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417440].
biodb.DEBUG[2024-12-21 16:06:05.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:05.144][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:05.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:05.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:05.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:05.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:05.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:05.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.166][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:05.168][private$selectFields]
biodb.TRACE[2024-12-21 16:06:05.169][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:05.170][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:05.171][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:05.172][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.173][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.176][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.177][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.178][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.180][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.182][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:05.183][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:05.184][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.185][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.187][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.189][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:05.190][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.195][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.199][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.205][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172413865].
biodb.DEBUG[2024-12-21 16:06:05.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:05.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:05.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:05.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:05.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:05.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:05.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:05.219][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.224][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.229][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:05.230][private$selectFields]
biodb.TRACE[2024-12-21 16:06:05.231][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:05.232][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:05.233][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:05.235][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.236][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.238][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.239][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.241][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.243][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.244][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:05.245][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:05.246][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.248][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.250][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.251][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:05.252][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.262][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.267][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172413863].
biodb.DEBUG[2024-12-21 16:06:05.268][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:05.269][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:05.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:05.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:05.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:05.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:05.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:05.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:05.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:05.297][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429:226.062362304571[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:05.301][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:06:05.302][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:06:05.304][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-12-21 16:06:05.376][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-12-21 16:06:05.377][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-12-21 16:06:05.379][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-12-21 16:06:05.381][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-12-21 16:06:05.430][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-21 16:06:05.433][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.content"
biodb.TRACE[2024-12-21 16:06:05.438][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.request"
biodb.DEBUG[2024-12-21 16:06:05.441][private$loadEntries] Creating entries from ids [2]: "172583683, 172561660".
biodb.DEBUG[2024-12-21 16:06:05.443][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-12-21 16:06:05.445][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172583683, 172561660".
biodb.TRACE[2024-12-21 16:06:05.446][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-12-21 16:06:05.448][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-21 16:06:05.449][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-12-21 16:06:05.451][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-21 16:06:05.452][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-21 16:06:05.453][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-12-21 16:06:05.454][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-12-21 16:06:05.456][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172583683,172561660/XML".
biodb.DEBUG[2024-12-21 16:06:05.459][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:06:05.460][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:06:05.461][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172583683,172561660/XML".
biodb.TRACE[2024-12-21 16:06:05.560][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172583683,172561660/XML).
biodb.TRACE[2024-12-21 16:06:05.686][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172583683.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172561660.xml"
biodb.DEBUG[2024-12-21 16:06:05.690][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-21 16:06:05.691][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-12-21 16:06:05.693][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-12-21 16:06:05.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:05.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:05.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:05.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:05.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:05.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:05.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:05.710][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:05.712][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:05.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.714][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:05.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:05.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.720][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:05.722][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:05.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.724][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:05.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:05.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.731][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:05.732][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:05.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.734][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:05.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:05.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.741][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:05.742][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:05.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.745][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:05.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:05.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.751][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:05.752][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:05.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.755][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.756][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:05.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:05.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.761][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:05.763][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:05.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.765][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:05.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:05.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.772][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:05.773][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:05.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.775][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.777][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:05.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:05.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.782][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:05.783][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:05.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.785][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.787][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:05.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:05.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.792][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:05.794][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:05.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.796][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:05.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:05.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.802][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:05.804][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:05.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.806][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.808][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:05.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:05.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.813][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:05.814][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:05.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.816][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.818][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:05.819][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:05.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.821][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:05.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:05.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.828][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:05.829][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:05.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.832][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.833][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:05.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:05.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.841][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:05.842][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:05.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.844][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.846][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:05.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:05.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.851][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:06:05.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:05.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.856][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:05.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:05.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:05.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:05.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.866][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:06:05.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:05.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:05.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:05.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:05.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:05.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.880][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:06:05.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:05.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:05.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:05.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:05.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:05.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.895][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:06:05.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:05.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:05.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:05.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:05.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:05.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.909][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:06:05.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:05.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:05.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:05.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:05.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:05.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.924][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:05.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:05.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.929][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:05.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:05.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.943][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:05.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:05.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:05.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:05.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:05.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:05.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:05.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:05.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:05.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:05.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:05.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:05.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:05.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:05.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:05.978][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:05.979][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:05.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.981][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:05.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:05.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.988][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:05.989][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:05.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.992][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:05.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:05.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:05.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:05.998][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:05.999][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:06.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.002][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.003][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:06.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:06.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.008][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:06.010][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:06.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.012][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:06.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:06.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.019][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:06.020][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:06.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.022][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.024][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:06.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:06.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.029][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:06.030][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:06.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.033][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:06.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:06.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.040][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:06.047][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:06.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.053][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.055][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:06.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:06.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.060][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:06.062][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:06.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.064][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.066][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:06.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:06.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.071][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:06.072][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:06.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.075][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.076][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:06.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:06.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.081][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:06.083][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:06.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.085][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.087][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:06.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:06.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.092][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:06.093][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:06.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.096][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.097][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:06.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:06.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.102][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:06.104][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:06.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.106][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:06.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:06.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.113][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:06.114][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:06.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.116][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.118][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:06.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:06.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.123][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:06.124][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:06.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.126][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.128][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:06.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:06.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.134][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:06:06.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:06.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:06.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:06.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:06.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:06.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.149][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:06:06.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:06.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:06.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:06.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:06.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:06.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.164][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:06:06.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:06.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:06.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:06.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:06.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:06.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.179][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:06:06.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:06.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:06.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:06.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:06.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:06.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.193][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:06:06.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:06.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:06.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:06.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:06.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:06.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.208][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:06.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:06.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.218][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:06.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:06.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.228][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:06.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:06.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:06.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:06.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:06.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:06.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:06.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:06.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:06.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:06.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:06.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:06.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:06.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:06.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:06.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:06.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:06.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:06.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:06.276][self$createEntryFromContent] Accession numbers: 172583683, 172561660.
biodb.DEBUG[2024-12-21 16:06:06.278][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:06.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:06.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:06.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:06.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:06.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:06.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:06.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:06.293][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.303][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.304][private$selectFields]
biodb.TRACE[2024-12-21 16:06:06.305][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:06.306][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:06.307][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.308][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.310][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.312][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.313][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.314][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.317][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.318][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.319][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.320][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.321][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.324][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.325][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:06.326][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.331][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.336][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.341][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172583683].
biodb.DEBUG[2024-12-21 16:06:06.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:06.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:06.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:06.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:06.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:06.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:06.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:06.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.361][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.365][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.367][private$selectFields]
biodb.TRACE[2024-12-21 16:06:06.368][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:06.369][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:06.370][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.371][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.373][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.375][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.376][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.377][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.380][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.381][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.382][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.383][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.384][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.387][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.388][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:06.389][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.394][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.399][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.404][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172561660].
biodb.DEBUG[2024-12-21 16:06:06.405][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:06.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:06.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:06.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:06.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:06.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:06.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:06.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.428][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.430][private$selectFields]
biodb.TRACE[2024-12-21 16:06:06.431][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:06.432][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:06.433][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.434][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.435][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.438][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.439][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.440][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.442][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.444][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.445][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.446][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.447][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.450][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.451][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:06.452][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.469][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.474][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172524779].
biodb.DEBUG[2024-12-21 16:06:06.476][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:06.477][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-21 16:06:06.487][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-21 16:06:06.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-21 16:06:06.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.492][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-21 16:06:06.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-21 16:06:06.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-21 16:06:06.503][biodb::testThat]
biodb.INFO [2024-12-21 16:06:06.504][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-12-21 16:06:06.505][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:06:06.506][biodb::testThat]
biodb.TRACE[2024-12-21 16:06:06.510][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-21 16:06:06.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-21 16:06:06.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.515][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-21 16:06:06.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-21 16:06:06.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:06.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:06.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:06.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:06.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:06.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:06.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:06.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:06.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:06.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:06.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:06.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:06.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:06.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:06.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:06.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:06.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:06.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:06.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:06.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:06.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:06.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:06.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:06.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:06.583][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:06.587][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:06:06.588][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-12-21 16:06:06.590][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:06:06.592][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-12-21 16:06:06.595][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:06.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:06.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:06.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:06.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:06.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:06.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:06.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:06.610][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.615][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.620][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.621][private$selectFields]
biodb.TRACE[2024-12-21 16:06:06.622][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:06.623][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:06.624][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.625][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.627][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.629][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.630][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.632][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.634][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.635][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.636][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.637][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.639][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.641][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.642][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:06.643][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.648][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.653][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.659][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417118].
biodb.DEBUG[2024-12-21 16:06:06.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:06.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:06.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:06.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:06.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:06.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:06.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:06.674][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.678][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.683][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.684][private$selectFields]
biodb.TRACE[2024-12-21 16:06:06.686][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:06.687][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:06.688][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.689][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.690][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.693][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.694][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.695][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.698][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.699][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.700][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.701][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.703][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.705][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.706][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:06.707][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.712][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.722][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172414340].
biodb.DEBUG[2024-12-21 16:06:06.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:06.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:06.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:06.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:06.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:06.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:06.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:06.737][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.742][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.747][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.748][private$selectFields]
biodb.TRACE[2024-12-21 16:06:06.749][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:06.750][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:06.751][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.752][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.754][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.756][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.757][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.758][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.761][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.762][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.763][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.764][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.766][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.768][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.769][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:06.770][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.775][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.780][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.785][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172414267].
biodb.DEBUG[2024-12-21 16:06:06.786][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:06.787][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:06.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:06.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:06.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:06.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:06.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:06.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:06.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:06.809][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:06.812][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:06:06.814][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-12-21 16:06:06.815][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:06:06.817][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-12-21 16:06:06.820][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:06.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:06.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:06.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:06.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:06.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:06.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:06.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:06.835][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.844][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.845][private$selectFields]
biodb.TRACE[2024-12-21 16:06:06.847][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:06.848][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:06.849][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.850][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.852][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.854][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.855][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.856][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.859][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.860][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.861][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.862][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.863][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.866][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.867][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:06.868][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.873][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.878][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.891][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529292].
biodb.DEBUG[2024-12-21 16:06:06.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:06.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:06.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:06.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:06.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:06.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:06.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:06.906][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.911][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.916][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.917][private$selectFields]
biodb.TRACE[2024-12-21 16:06:06.918][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:06.920][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:06.921][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.922][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.923][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.926][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.927][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.928][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.931][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.932][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.933][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.934][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.936][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.938][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.939][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:06.940][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.945][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.950][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.955][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529260].
biodb.DEBUG[2024-12-21 16:06:06.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:06.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:06.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:06.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:06.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:06.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:06.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:06.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.980][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.981][private$selectFields]
biodb.TRACE[2024-12-21 16:06:06.982][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:06.983][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:06.984][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.986][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.987][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.989][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.990][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.992][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:06.994][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:06.995][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.997][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:06.998][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:06.999][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.001][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.003][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:07.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.009][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.014][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.019][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172524779].
biodb.DEBUG[2024-12-21 16:06:07.020][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:07.021][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-21 16:06:07.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:07.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:07.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:07.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:07.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:07.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:07.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:07.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:07.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:07.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:07.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:07.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:07.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:07.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:07.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:07.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:07.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:07.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:07.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:07.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:07.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:07.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:07.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:07.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:07.109][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:07.113][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:06:07.115][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-12-21 16:06:07.116][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:06:07.118][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-12-21 16:06:07.121][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:07.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:07.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:07.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:07.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:07.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:07.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:07.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:07.137][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.142][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.146][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:07.148][private$selectFields]
biodb.TRACE[2024-12-21 16:06:07.149][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:07.150][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:07.151][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:07.152][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.154][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.156][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.157][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.158][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.161][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.162][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:07.163][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:07.164][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.166][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.168][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.169][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:07.170][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.180][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.185][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172431267].
biodb.DEBUG[2024-12-21 16:06:07.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:07.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:07.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:07.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:07.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:07.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:07.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:07.200][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.205][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.210][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:07.211][private$selectFields]
biodb.TRACE[2024-12-21 16:06:07.212][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:07.213][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:07.214][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:07.215][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.217][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.219][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.220][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.221][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.224][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.225][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:07.226][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:07.227][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.229][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.231][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.232][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:07.233][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.248][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417440].
biodb.DEBUG[2024-12-21 16:06:07.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:07.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:07.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:07.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:07.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:07.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:07.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:07.263][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.268][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.273][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:07.274][private$selectFields]
biodb.TRACE[2024-12-21 16:06:07.275][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:07.276][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:07.277][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:07.279][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.280][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.282][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.283][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.285][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.287][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.288][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:07.290][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:07.291][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.292][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.295][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.296][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:07.297][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.309][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.314][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.320][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172414169].
biodb.DEBUG[2024-12-21 16:06:07.321][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:07.322][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:07.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:07.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:07.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:07.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:07.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:07.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:07.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:07.344][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:07.348][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:06:07.349][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-12-21 16:06:07.351][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:06:07.353][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-12-21 16:06:07.355][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:07.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:07.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:07.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:07.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:07.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:07.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:07.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:07.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.380][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:07.381][private$selectFields]
biodb.TRACE[2024-12-21 16:06:07.383][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:07.384][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:07.385][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:07.386][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.387][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.390][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.391][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.392][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.394][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.396][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:07.397][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:07.398][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.399][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.402][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.403][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:07.404][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.419][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634706].
biodb.DEBUG[2024-12-21 16:06:07.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:07.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:07.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:07.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:07.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:07.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:07.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:07.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.439][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.444][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:07.445][private$selectFields]
biodb.TRACE[2024-12-21 16:06:07.446][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:07.448][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:07.449][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:07.450][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.451][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.454][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.455][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.456][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.458][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.460][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:07.461][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:07.462][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.463][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.465][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.467][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:07.468][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.473][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.478][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.483][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172629519].
biodb.DEBUG[2024-12-21 16:06:07.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:07.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:07.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:07.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:07.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:07.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:07.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:07.498][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.503][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.507][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:07.509][private$selectFields]
biodb.TRACE[2024-12-21 16:06:07.510][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:07.511][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:07.512][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:07.513][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.514][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.517][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.518][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.519][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.522][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.523][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:07.524][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:07.525][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.526][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.529][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.530][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:07.531][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.536][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.541][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:07.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.546][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172621093].
biodb.DEBUG[2024-12-21 16:06:07.547][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:07.548][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-21 16:06:07.574][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-21 16:06:07.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-21 16:06:07.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.579][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-21 16:06:07.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-21 16:06:07.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.588][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:07.589][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:07.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.592][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.593][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:07.594][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:07.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.597][ef$get] fields variable is a list.
biodb.INFO [2024-12-21 16:06:07.599][biodb::testThat]
biodb.INFO [2024-12-21 16:06:07.600][biodb::testThat] Running test function test.annotateMzValues_real_values (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2024-12-21 16:06:07.601][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:06:07.603][biodb::testThat]
biodb.TRACE[2024-12-21 16:06:07.606][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-21 16:06:07.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-21 16:06:07.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.611][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-21 16:06:07.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-21 16:06:07.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:07.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:07.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:07.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:07.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:07.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:07.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:07.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:07.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:07.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:07.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.641][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:07.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:07.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:07.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:07.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:07.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:07.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:07.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:07.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:07.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:07.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:07.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:07.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:07.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:07.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:07.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:07.677][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:07.681][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:06:07.682][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:06:07.684][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-12-21 16:06:07.755][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-12-21 16:06:07.756][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-12-21 16:06:07.758][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-12-21 16:06:07.759][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-12-21 16:06:07.825][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-21 16:06:07.828][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content"
biodb.TRACE[2024-12-21 16:06:07.833][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.request"
biodb.DEBUG[2024-12-21 16:06:07.836][private$loadEntries] Creating entries from ids [3]: "172631573, 172626062, 172621906".
biodb.DEBUG[2024-12-21 16:06:07.837][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-12-21 16:06:07.839][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172631573, 172626062, 172621906".
biodb.TRACE[2024-12-21 16:06:07.841][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-12-21 16:06:07.842][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-21 16:06:07.844][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-12-21 16:06:07.845][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-21 16:06:07.846][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-21 16:06:07.847][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-12-21 16:06:07.849][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-12-21 16:06:07.851][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172631573,172626062,172621906/XML".
biodb.DEBUG[2024-12-21 16:06:07.853][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:06:07.855][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:06:07.856][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172631573,172626062,172621906/XML".
biodb.TRACE[2024-12-21 16:06:07.957][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172631573,172626062,172621906/XML).
biodb.TRACE[2024-12-21 16:06:08.062][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172631573.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172626062.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172621906.xml"
biodb.DEBUG[2024-12-21 16:06:08.067][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-21 16:06:08.069][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-12-21 16:06:08.071][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-12-21 16:06:08.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:08.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:08.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:08.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:08.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:08.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:08.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:08.088][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:08.090][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:08.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.092][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:08.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:08.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.099][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:08.100][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:08.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.103][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:08.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:08.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.109][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:08.111][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:08.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.113][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:08.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:08.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.119][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:08.121][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:08.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.123][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:08.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:08.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.130][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:08.131][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:08.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.134][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:08.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:08.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.141][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:08.142][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:08.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.144][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:08.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:08.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.151][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:08.152][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:08.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.154][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.156][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:08.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:08.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.161][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:08.162][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:08.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.164][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.166][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:08.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:08.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.171][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:08.172][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:08.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.175][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:08.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:08.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.181][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:08.182][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:08.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.185][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:08.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:08.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.191][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:08.193][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:08.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.195][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.196][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:08.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:08.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.201][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:08.203][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:08.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.205][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:08.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:08.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.211][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:08.213][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:08.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.215][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.216][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:08.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:08.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.221][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:08.223][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:08.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.225][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.227][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:08.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:08.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.232][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:06:08.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:08.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.236][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:08.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:08.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:08.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:08.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.246][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:06:08.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:08.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.251][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:08.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:08.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.256][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:08.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:08.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.261][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:06:08.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:08.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:08.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:08.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:08.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:08.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.275][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:06:08.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:08.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:08.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:08.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:08.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:08.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.289][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:06:08.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:08.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:08.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:08.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:08.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:08.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.304][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:08.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:08.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.309][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.313][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:08.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:08.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.323][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:08.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:08.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:08.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:08.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:08.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:08.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:08.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:08.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:08.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:08.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:08.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:08.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:08.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:08.358][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:08.359][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:08.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.361][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:08.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:08.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.368][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:08.369][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:08.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.371][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:08.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:08.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.378][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:08.379][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:08.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.382][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:08.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:08.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.388][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:08.389][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:08.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.392][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:08.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:08.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.398][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:08.399][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:08.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.402][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:08.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:08.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.408][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:08.410][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:08.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.412][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:08.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:08.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.418][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:08.420][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:08.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.422][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.423][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:08.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:08.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.428][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:08.430][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:08.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.432][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.434][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:08.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:08.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.438][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:08.440][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:08.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.442][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:08.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:08.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.449][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:08.450][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:08.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.452][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:08.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:08.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.459][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:08.460][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:08.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.462][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.464][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:08.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:08.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.477][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:08.478][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:08.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.481][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:08.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:08.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.487][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:08.488][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:08.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.491][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.492][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:08.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:08.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.497][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:08.499][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:08.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.501][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.502][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:08.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:08.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.507][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:06:08.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:08.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:08.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:08.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:08.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:08.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.522][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:06:08.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:08.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:08.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:08.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:08.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:08.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.536][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:06:08.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:08.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:08.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:08.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:08.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:08.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.551][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:06:08.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:08.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:08.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:08.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:08.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:08.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.565][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:06:08.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:08.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.570][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:08.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:08.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:08.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:08.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.579][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:08.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:08.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.585][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.589][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:08.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:08.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:08.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:08.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:08.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:08.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:08.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:08.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:08.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:08.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:08.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:08.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:08.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:08.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:08.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:08.633][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:08.634][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:08.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.637][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:08.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:08.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.643][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:08.644][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:08.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.647][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:08.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:08.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.653][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:08.654][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:08.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.657][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:08.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:08.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.663][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:08.664][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:08.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.666][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:08.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:08.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.673][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:08.674][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:08.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.676][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:08.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:08.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.683][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:08.684][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:08.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.686][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:08.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:08.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.693][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:08.694][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:08.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.696][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.698][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:08.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:08.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.703][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:08.704][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:08.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.706][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.708][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:08.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:08.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.713][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:08.714][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:08.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.716][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.718][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:08.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:08.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.722][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:08.724][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:08.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.726][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:08.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:08.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.732][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:08.733][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:08.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.736][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.737][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:08.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:08.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.742][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:08.743][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:08.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.746][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:08.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:08.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.752][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:08.753][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:08.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.755][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.757][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:08.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:08.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.762][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:08.763][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:08.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.765][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.767][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:08.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:08.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.772][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:06:08.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:08.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:08.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:08.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.782][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:08.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:08.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.787][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:06:08.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:08.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.792][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:08.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:08.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.797][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:08.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:08.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.801][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:06:08.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:08.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:08.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:08.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:08.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:08.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.816][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:06:08.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:08.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:08.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:08.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:08.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:08.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.830][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:06:08.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:08.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:08.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:08.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:08.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:08.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.845][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:08.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:08.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.850][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.855][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:08.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:08.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:08.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:08.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:08.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:08.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:08.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:08.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:08.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:08.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:08.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:08.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:08.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:08.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:08.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:08.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:08.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:08.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:08.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:08.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:08.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:08.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:08.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:08.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:08.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:08.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:08.935][self$createEntryFromContent] Accession numbers: 172631573, 172626062, 172621906.
biodb.DEBUG[2024-12-21 16:06:08.936][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:08.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:08.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:08.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:08.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:08.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:08.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:08.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:08.952][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.961][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:08.962][private$selectFields]
biodb.TRACE[2024-12-21 16:06:08.963][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:08.965][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:08.966][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:08.967][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.968][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.971][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.972][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.973][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.975][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.977][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:08.978][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:08.979][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.980][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.983][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.984][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:08.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:08.995][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:08.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:08.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.000][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2024-12-21 16:06:09.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:09.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:09.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:09.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:09.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:09.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:09.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:09.015][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.020][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.025][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:09.026][private$selectFields]
biodb.TRACE[2024-12-21 16:06:09.027][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:09.028][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:09.029][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:09.030][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.032][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.034][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.035][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.036][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.039][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.040][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:09.041][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:09.042][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.044][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.046][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.047][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:09.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.053][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.058][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.063][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172626062].
biodb.DEBUG[2024-12-21 16:06:09.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:09.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:09.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:09.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:09.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:09.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:09.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:09.078][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.083][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.087][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:09.089][private$selectFields]
biodb.TRACE[2024-12-21 16:06:09.090][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:09.091][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:09.092][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:09.093][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.095][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.097][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.098][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.099][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.102][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.103][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:09.104][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:09.105][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.106][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.109][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.110][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:09.111][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.116][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.121][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.126][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172621906].
biodb.DEBUG[2024-12-21 16:06:09.127][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:09.128][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:09.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:09.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:09.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:09.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:09.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:09.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:09.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:09.150][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:09.154][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:06:09.155][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:06:09.157][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-12-21 16:06:09.229][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-12-21 16:06:09.230][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-12-21 16:06:09.232][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-12-21 16:06:09.233][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-12-21 16:06:09.297][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-21 16:06:09.300][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content"
biodb.TRACE[2024-12-21 16:06:09.305][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.request"
biodb.DEBUG[2024-12-21 16:06:09.307][private$loadEntries] Creating entries from ids [3]: "172617828, 172612147, 172608842".
biodb.DEBUG[2024-12-21 16:06:09.309][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-12-21 16:06:09.310][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172617828, 172612147, 172608842".
biodb.TRACE[2024-12-21 16:06:09.312][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-12-21 16:06:09.313][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-21 16:06:09.315][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-12-21 16:06:09.316][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-21 16:06:09.317][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-21 16:06:09.318][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-12-21 16:06:09.320][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-12-21 16:06:09.322][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172617828,172612147,172608842/XML".
biodb.DEBUG[2024-12-21 16:06:09.324][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:06:09.325][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:06:09.327][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172617828,172612147,172608842/XML".
biodb.TRACE[2024-12-21 16:06:09.424][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172617828,172612147,172608842/XML).
biodb.TRACE[2024-12-21 16:06:09.520][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172617828.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172612147.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172608842.xml"
biodb.DEBUG[2024-12-21 16:06:09.525][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-21 16:06:09.527][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-12-21 16:06:09.528][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-12-21 16:06:09.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:09.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:09.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:09.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:09.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:09.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:09.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:09.545][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:09.547][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:09.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.549][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:09.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:09.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.555][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:09.557][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:09.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.559][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.560][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:09.562][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:09.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.564][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.566][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:09.567][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:09.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.569][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.571][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:09.572][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:09.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.574][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.576][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:09.577][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:09.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.579][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.581][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:09.582][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:09.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.584][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.586][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:09.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:09.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.591][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:09.592][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:09.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.594][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.596][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:09.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:09.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.601][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:09.602][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:09.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.604][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:09.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:09.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.621][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:09.623][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:09.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.625][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:09.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:09.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.632][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:09.633][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:09.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.636][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.637][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:09.639][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:09.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.641][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:09.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:09.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.648][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:09.649][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:09.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.652][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.653][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:09.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:09.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.659][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:09.660][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:09.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.662][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.664][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:09.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:09.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.669][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:06:09.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:09.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.674][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:06:09.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:09.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.679][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:06:09.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:09.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.684][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:06:09.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:09.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.688][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:06:09.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:09.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.693][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.698][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:09.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:09.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.708][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:09.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:09.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:09.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:09.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:09.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:09.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:09.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:09.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:09.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:09.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:09.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:09.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:09.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:09.743][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:09.744][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:09.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.746][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:09.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:09.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.753][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:09.754][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:09.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.756][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:09.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:09.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.763][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:09.764][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:09.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.767][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:09.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:09.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.773][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:09.774][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:09.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.777][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:09.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:09.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.783][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:09.785][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:09.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.787][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:09.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:09.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.793][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:09.795][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:09.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.797][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:09.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:09.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.804][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:09.805][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:09.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.807][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.809][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:09.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:09.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.814][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:09.815][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:09.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.817][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.819][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:09.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:09.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.824][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:09.825][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:09.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.827][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:09.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:09.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.834][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:09.835][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:09.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.837][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:09.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:09.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.843][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:09.845][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:09.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.847][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.848][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:09.850][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:09.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.852][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:09.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:09.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.859][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:09.860][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:09.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.862][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.864][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:09.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:09.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.869][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:09.870][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:09.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.872][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.874][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:09.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:09.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.879][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:06:09.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:09.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:09.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:09.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:09.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:09.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.893][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:06:09.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:09.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:09.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:09.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.903][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:09.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:09.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.908][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:06:09.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:09.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:09.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:09.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:09.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:09.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.922][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:06:09.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:09.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.927][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:09.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:09.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.932][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:09.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:09.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.937][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:06:09.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:09.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.941][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:09.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:09.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.946][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:09.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:09.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.951][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:09.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:09.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.961][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:09.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:09.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:09.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:09.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:09.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:09.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:09.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:09.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:09.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:09.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:09.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:09.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:09.990][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:09.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:09.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:09.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:10.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:10.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:10.004][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:10.005][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:10.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.007][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:10.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:10.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.014][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:10.015][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:10.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.017][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:10.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:10.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.031][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:10.032][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:10.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.035][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:10.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:10.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.041][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:10.042][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:10.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.045][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.046][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:10.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:10.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.051][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:10.053][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:10.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.055][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:10.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:10.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.062][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:10.063][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:10.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.065][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:10.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:10.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.072][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:10.073][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:10.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.076][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.077][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:10.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:10.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.082][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:10.083][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:10.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.085][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.087][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:10.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:10.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.092][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:10.093][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:10.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.095][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.097][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:10.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:10.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.102][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:10.103][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:10.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.105][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.107][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:10.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:10.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.112][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:10.113][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:10.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.115][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.117][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:10.118][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:10.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.120][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:10.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:10.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.127][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:10.128][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:10.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.130][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.132][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:10.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:10.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.139][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:10.140][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:10.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.144][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.146][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:10.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:10.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.153][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:06:10.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:10.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:10.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:10.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:10.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:10.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.174][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:06:10.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:10.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:10.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:10.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:10.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:10.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.188][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:06:10.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:10.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:10.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:10.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:10.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:10.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.203][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:06:10.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:10.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.207][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:10.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:10.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:10.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:10.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.217][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:06:10.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:10.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:10.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:10.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:10.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:10.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.231][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:10.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:10.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:10.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:10.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.250][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:10.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:10.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:10.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:10.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:10.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:10.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:10.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:10.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:10.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:10.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:10.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:10.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:10.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:10.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:10.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:10.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:10.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:10.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:10.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:10.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:10.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:10.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:10.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:10.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:10.312][self$createEntryFromContent] Accession numbers: 172617828, 172612147, 172608842.
biodb.DEBUG[2024-12-21 16:06:10.313][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:10.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:10.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:10.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:10.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:10.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:10.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:10.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:10.328][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.333][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.337][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.339][private$selectFields]
biodb.TRACE[2024-12-21 16:06:10.340][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:10.341][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:10.342][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.343][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.344][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.347][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.348][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.349][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.351][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.352][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.354][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.355][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.356][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.358][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.359][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:10.361][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.370][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.375][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172617828].
biodb.DEBUG[2024-12-21 16:06:10.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:10.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:10.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:10.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:10.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:10.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:10.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:10.390][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.394][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.399][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.400][private$selectFields]
biodb.TRACE[2024-12-21 16:06:10.401][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:10.402][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:10.403][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.405][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.406][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.408][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.409][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.410][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.413][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.414][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.415][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.416][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.417][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.420][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.421][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:10.422][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.427][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.432][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.451][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172612147].
biodb.DEBUG[2024-12-21 16:06:10.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:10.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:10.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:10.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:10.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:10.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:10.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:10.465][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.470][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.475][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.476][private$selectFields]
biodb.TRACE[2024-12-21 16:06:10.477][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:10.479][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:10.480][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.481][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.482][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.485][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.486][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.487][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.489][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.491][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.492][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.493][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.494][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.496][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.498][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:10.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.504][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.514][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172608842].
biodb.DEBUG[2024-12-21 16:06:10.515][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:10.516][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:10.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:10.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:10.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:10.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:10.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:10.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:10.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:10.561][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:10.565][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:06:10.566][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-12-21 16:06:10.568][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:06:10.570][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-12-21 16:06:10.572][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:10.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:10.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:10.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:10.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:10.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:10.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:10.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:10.587][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.596][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.597][private$selectFields]
biodb.TRACE[2024-12-21 16:06:10.599][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:10.600][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:10.601][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.602][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.603][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.606][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.607][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.608][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.610][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.611][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.613][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.614][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.615][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.617][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.618][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:10.620][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.624][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.634][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417118].
biodb.DEBUG[2024-12-21 16:06:10.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:10.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:10.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:10.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:10.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:10.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:10.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:10.649][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.654][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.658][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.659][private$selectFields]
biodb.TRACE[2024-12-21 16:06:10.661][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:10.662][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:10.663][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.664][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.665][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.668][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.669][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.670][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.672][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.673][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.675][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.676][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.677][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.679][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.680][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:10.682][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.686][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.691][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.696][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172414340].
biodb.DEBUG[2024-12-21 16:06:10.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:10.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:10.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:10.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:10.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:10.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:10.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:10.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.715][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.720][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.721][private$selectFields]
biodb.TRACE[2024-12-21 16:06:10.722][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:10.723][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:10.724][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.725][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.727][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.729][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.730][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.731][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.734][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.735][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.736][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.737][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.738][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.740][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.742][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:10.743][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.747][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.752][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.757][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172414267].
biodb.DEBUG[2024-12-21 16:06:10.758][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:10.759][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:10.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:10.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:10.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:10.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:10.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:10.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:10.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:10.780][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:10.784][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:06:10.785][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-12-21 16:06:10.787][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:06:10.789][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-12-21 16:06:10.791][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:10.793][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:10.794][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:10.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:10.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:10.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:10.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:10.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:10.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.811][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.816][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.817][private$selectFields]
biodb.TRACE[2024-12-21 16:06:10.818][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:10.819][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:10.820][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.821][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.823][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.825][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.826][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.827][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.829][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.831][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.832][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.833][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.834][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.836][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.837][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:10.839][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.843][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.848][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.861][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529292].
biodb.DEBUG[2024-12-21 16:06:10.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:10.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:10.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:10.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:10.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:10.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:10.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:10.876][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.880][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.885][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.886][private$selectFields]
biodb.TRACE[2024-12-21 16:06:10.888][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:10.889][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:10.890][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.891][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.892][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.895][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.896][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.897][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.900][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.901][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.902][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.903][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.904][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.907][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.908][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:10.909][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.914][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.918][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.924][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529260].
biodb.DEBUG[2024-12-21 16:06:10.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:10.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:10.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:10.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:10.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:10.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:10.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:10.938][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.943][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.947][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.948][private$selectFields]
biodb.TRACE[2024-12-21 16:06:10.950][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:10.951][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:10.952][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.953][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.954][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.956][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.958][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.959][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.961][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.962][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.964][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:10.965][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.966][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.968][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.969][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:10.971][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:10.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:10.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:10.985][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172524779].
biodb.DEBUG[2024-12-21 16:06:10.986][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:10.988][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:11.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:11.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:11.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:11.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:11.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:11.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:11.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:11.032][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:11.036][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:06:11.037][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:06:11.039][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-12-21 16:06:11.112][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-12-21 16:06:11.113][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-12-21 16:06:11.115][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-12-21 16:06:11.117][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-12-21 16:06:11.167][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-21 16:06:11.170][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content"
biodb.TRACE[2024-12-21 16:06:11.175][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.request"
biodb.DEBUG[2024-12-21 16:06:11.178][private$loadEntries] Creating entries from ids [2]: "172628475, 172627886".
biodb.DEBUG[2024-12-21 16:06:11.180][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-12-21 16:06:11.181][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172628475, 172627886".
biodb.TRACE[2024-12-21 16:06:11.183][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-12-21 16:06:11.184][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-21 16:06:11.186][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-12-21 16:06:11.187][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-21 16:06:11.188][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-21 16:06:11.189][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-12-21 16:06:11.191][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-12-21 16:06:11.193][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172628475,172627886/XML".
biodb.DEBUG[2024-12-21 16:06:11.195][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:06:11.197][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:06:11.198][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172628475,172627886/XML".
biodb.TRACE[2024-12-21 16:06:11.270][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172628475,172627886/XML).
biodb.TRACE[2024-12-21 16:06:11.371][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172628475.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172627886.xml"
biodb.DEBUG[2024-12-21 16:06:11.375][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-21 16:06:11.376][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-12-21 16:06:11.378][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-12-21 16:06:11.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:11.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:11.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:11.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:11.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:11.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:11.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:11.395][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:11.396][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:11.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.399][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:11.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:11.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.405][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:11.406][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:11.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.409][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:11.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:11.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.415][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:11.416][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:11.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.419][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.420][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:11.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:11.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.425][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:11.426][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:11.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.429][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:11.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:11.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.435][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:11.436][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:11.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.439][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:11.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:11.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.445][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:11.446][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:11.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.448][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:11.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:11.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.455][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:11.456][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:11.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.458][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.460][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:11.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:11.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.465][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:11.466][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:11.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.468][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.470][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:11.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:11.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.475][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:11.476][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:11.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.478][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.480][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:11.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:11.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.485][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:11.486][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:11.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.488][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:11.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:11.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.495][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:11.496][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:11.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.498][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.500][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:11.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:11.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.505][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:11.506][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:11.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.508][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:11.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:11.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.515][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:11.516][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:11.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.518][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.520][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:11.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:11.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.524][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:11.526][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:11.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.528][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.530][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:11.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:11.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.535][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:06:11.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:11.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:11.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:11.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.544][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:11.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:11.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.549][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:06:11.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:11.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.564][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:11.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:11.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.570][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:11.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:11.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.575][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:06:11.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:11.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:11.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:11.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:11.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:11.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.591][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:06:11.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:11.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:11.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:11.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:11.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:11.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.606][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:06:11.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:11.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:11.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:11.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.616][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:11.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:11.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.620][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:11.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:11.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.625][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:11.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:11.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.630][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:11.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:11.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:11.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:11.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.640][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:11.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:11.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:11.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:11.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:11.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:11.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:11.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:11.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:11.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:11.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:11.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:11.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:11.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:11.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:11.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:11.674][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:11.676][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:11.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.678][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:11.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:11.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.685][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:11.686][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:11.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.688][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:11.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:11.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.695][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:11.696][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:11.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.698][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:11.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:11.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.705][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:11.706][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:11.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.708][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.710][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:11.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:11.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.715][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:11.716][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:11.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.719][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:11.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:11.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.725][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:11.726][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:11.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.729][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:11.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:11.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.735][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:11.736][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:11.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.739][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.740][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:11.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:11.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.745][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:11.746][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:11.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.749][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.750][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:11.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:11.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.755][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:11.756][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:11.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.759][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.760][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:11.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:11.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.765][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:11.766][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:11.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.769][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.770][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:11.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:11.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.775][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:11.776][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:11.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.779][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.780][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:11.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:11.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.785][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:11.786][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:11.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.789][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:11.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:11.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.795][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:11.796][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:11.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.798][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.800][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:11.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:11.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.805][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:11.806][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:11.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.808][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.810][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:11.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:11.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.815][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:06:11.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:11.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:11.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:11.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:11.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:11.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.829][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:06:11.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:11.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:11.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:11.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.839][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:11.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:11.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.844][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:06:11.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:11.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:11.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:11.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:11.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:11.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.858][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:06:11.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:11.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:11.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:11.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:11.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:11.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.872][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:06:11.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:11.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:11.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:11.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:11.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:11.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.887][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:11.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:11.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.891][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:11.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:11.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.896][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:11.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:11.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:11.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:11.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.906][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:11.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:11.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:11.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:11.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:11.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:11.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:11.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:11.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:11.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:11.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:11.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:11.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:11.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:11.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:11.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:11.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:11.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:11.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:11.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:11.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:11.954][self$createEntryFromContent] Accession numbers: 172628475, 172627886.
biodb.DEBUG[2024-12-21 16:06:11.955][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:11.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:11.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:11.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:11.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:11.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:11.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:11.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:11.978][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:11.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:11.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.983][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:11.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:11.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.988][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:11.989][private$selectFields]
biodb.TRACE[2024-12-21 16:06:11.990][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:11.992][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:11.993][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:11.994][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:11.995][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:11.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:11.998][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:11.999][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.000][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.003][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.004][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:12.005][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:12.006][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.007][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.010][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.011][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:12.012][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.022][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.027][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2024-12-21 16:06:12.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:12.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:12.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:12.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:12.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:12.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:12.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:12.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.047][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.052][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:12.053][private$selectFields]
biodb.TRACE[2024-12-21 16:06:12.054][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:12.055][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:12.056][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:12.057][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.059][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.061][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.062][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.063][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.066][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.067][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:12.068][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:12.069][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.070][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.073][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.074][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:12.075][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.080][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.085][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.090][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172628475].
biodb.DEBUG[2024-12-21 16:06:12.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:12.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:12.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:12.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:12.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:12.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:12.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:12.105][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.110][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.115][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:12.116][private$selectFields]
biodb.TRACE[2024-12-21 16:06:12.117][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:12.118][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:12.119][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:12.121][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.122][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.124][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.126][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.127][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.129][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.130][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:12.131][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:12.133][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.134][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.136][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.137][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:12.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.144][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.148][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.154][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172627886].
biodb.DEBUG[2024-12-21 16:06:12.155][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:12.156][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:12.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:12.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:12.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:12.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:12.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:12.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:12.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:12.177][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:12.180][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:06:12.182][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:06:12.184][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-12-21 16:06:12.258][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-12-21 16:06:12.259][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-12-21 16:06:12.261][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-12-21 16:06:12.263][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-12-21 16:06:12.318][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-21 16:06:12.321][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content"
biodb.TRACE[2024-12-21 16:06:12.326][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.request"
biodb.DEBUG[2024-12-21 16:06:12.329][private$loadEntries] Creating entries from ids [3]: "172635342, 172634104, 172633058".
biodb.DEBUG[2024-12-21 16:06:12.331][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-12-21 16:06:12.333][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172635342, 172634104, 172633058".
biodb.TRACE[2024-12-21 16:06:12.334][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-12-21 16:06:12.336][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-21 16:06:12.337][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-12-21 16:06:12.338][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-21 16:06:12.339][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-21 16:06:12.341][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-12-21 16:06:12.342][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-12-21 16:06:12.344][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172635342,172634104,172633058/XML".
biodb.DEBUG[2024-12-21 16:06:12.346][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:06:12.348][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:06:12.349][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172635342,172634104,172633058/XML".
biodb.TRACE[2024-12-21 16:06:12.425][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172635342,172634104,172633058/XML).
biodb.TRACE[2024-12-21 16:06:12.534][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172635342.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172634104.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172633058.xml"
biodb.DEBUG[2024-12-21 16:06:12.539][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-21 16:06:12.540][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-12-21 16:06:12.542][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-12-21 16:06:12.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:12.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:12.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:12.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:12.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:12.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:12.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:12.559][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:12.560][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:12.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.562][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:12.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:12.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.569][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:12.570][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:12.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.573][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:12.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:12.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.579][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:12.580][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:12.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.583][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:12.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:12.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.589][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:12.590][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:12.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.593][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:12.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:12.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.599][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:12.600][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:12.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.603][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:12.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:12.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.609][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:12.611][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:12.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.613][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:12.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:12.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.619][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:12.621][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:12.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.623][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.624][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:12.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:12.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.629][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:12.631][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:12.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.633][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.634][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:12.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:12.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.639][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:12.641][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:12.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.643][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:12.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:12.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.649][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:12.651][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:12.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.653][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:12.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:12.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.659][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:12.660][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:12.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.663][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.664][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:12.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:12.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.669][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:12.670][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:12.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.673][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:12.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:12.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.679][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:12.680][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:12.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.683][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.684][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:12.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:12.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.700][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:12.702][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:12.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.704][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:12.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:12.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.711][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:06:12.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:12.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:12.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:12.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:12.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:12.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.726][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:06:12.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:12.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:12.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:12.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:12.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:12.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.741][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:06:12.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:12.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:12.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:12.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:12.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:12.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.756][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:06:12.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:12.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:12.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:12.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.765][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:12.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:12.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.770][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:06:12.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:12.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.775][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:12.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:12.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.779][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:12.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:12.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.784][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:12.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:12.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.789][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.794][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:12.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:12.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.803][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:12.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:12.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:12.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:12.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:12.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:12.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:12.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:12.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:12.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:12.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:12.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:12.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:12.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:12.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:12.838][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:12.839][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:12.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.842][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:12.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:12.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.848][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:12.849][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:12.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.851][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:12.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:12.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.858][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:12.859][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:12.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.862][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:12.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:12.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.868][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:12.869][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:12.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.872][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:12.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:12.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.878][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:12.879][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:12.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.882][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.883][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:12.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:12.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.888][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:12.889][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:12.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.892][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.893][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:12.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:12.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.898][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:12.899][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:12.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.901][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.903][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:12.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:12.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.908][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:12.909][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:12.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.911][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.913][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:12.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:12.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.918][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:12.919][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:12.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.921][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:12.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:12.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.928][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:12.929][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:12.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.931][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.933][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:12.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:12.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.938][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:12.939][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:12.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.941][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.942][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:12.944][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:12.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.946][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:12.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:12.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.952][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:12.954][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:12.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.956][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.957][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:12.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:12.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.962][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:12.963][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:12.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.966][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.967][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:12.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:12.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.972][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:06:12.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:12.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:12.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:12.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:12.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:12.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.986][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:06:12.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:12.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:12.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:12.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:12.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:12.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:12.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:12.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.001][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:06:13.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:13.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:13.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:13.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.010][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:13.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:13.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.015][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:06:13.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:13.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:13.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:13.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:13.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:13.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.029][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:06:13.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:13.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:13.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:13.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.039][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:13.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:13.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.044][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:13.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:13.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.049][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.053][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:13.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:13.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.063][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:13.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:13.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:13.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:13.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:13.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:13.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:13.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:13.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:13.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:13.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:13.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:13.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:13.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:13.104][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:13.106][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:13.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.108][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:13.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:13.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.115][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:13.116][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:13.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.119][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.121][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:13.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:13.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.126][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:13.127][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:13.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.130][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.131][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:13.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:13.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.136][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:13.138][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:13.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.140][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.142][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:13.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:13.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.147][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:13.148][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:13.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.150][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:13.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:13.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.157][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:13.158][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:13.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.160][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:13.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:13.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.167][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:13.168][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:13.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.171][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.172][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:13.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:13.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.177][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:13.178][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:13.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.181][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.182][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:13.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:13.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.187][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:13.188][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:13.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.191][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:13.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:13.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.197][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:13.198][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:13.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.201][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.202][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:13.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:13.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.207][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:13.208][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:13.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.211][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.212][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:13.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:13.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.217][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:13.218][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:13.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.221][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:13.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:13.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.227][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:13.228][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:13.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.231][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.232][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:13.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:13.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.237][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:13.238][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:13.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.241][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.242][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:13.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:13.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.247][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:06:13.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:13.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.252][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:13.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:13.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:13.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:13.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.262][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:06:13.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:13.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.267][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:13.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:13.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.271][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:13.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:13.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.276][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:06:13.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:13.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.281][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:13.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:13.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:13.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:13.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.291][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:06:13.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:13.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.295][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:13.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:13.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:13.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:13.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.305][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:06:13.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:13.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:13.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:13.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.316][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:13.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:13.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.320][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:13.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:13.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.325][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.330][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:13.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:13.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.339][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:13.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:13.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:13.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:13.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:13.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:13.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:13.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:13.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:13.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:13.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:13.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:13.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:13.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:13.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:13.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:13.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:13.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:13.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:13.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:13.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:13.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:13.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:13.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:13.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:13.401][self$createEntryFromContent] Accession numbers: 172635342, 172634104, 172633058.
biodb.DEBUG[2024-12-21 16:06:13.403][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:13.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:13.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:13.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:13.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:13.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:13.415][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:13.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:13.418][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.427][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:13.428][private$selectFields]
biodb.TRACE[2024-12-21 16:06:13.430][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:13.431][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:13.432][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:13.433][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.434][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.437][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.438][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.439][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.441][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.442][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:13.444][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:13.445][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.446][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.448][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.449][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:13.451][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.455][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.460][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.465][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172635342].
biodb.DEBUG[2024-12-21 16:06:13.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:13.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:13.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:13.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:13.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:13.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:13.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:13.480][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.485][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.489][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:13.491][private$selectFields]
biodb.TRACE[2024-12-21 16:06:13.492][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:13.493][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:13.494][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:13.495][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.496][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.499][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.500][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.501][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.510][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.512][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:13.513][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:13.514][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.516][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.518][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.519][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:13.520][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.525][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.530][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.535][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634104].
biodb.DEBUG[2024-12-21 16:06:13.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:13.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:13.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:13.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:13.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:13.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:13.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:13.550][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.555][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.560][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:13.561][private$selectFields]
biodb.TRACE[2024-12-21 16:06:13.562][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:13.563][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:13.564][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:13.566][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.567][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.569][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.570][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.572][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.574][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.575][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:13.576][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:13.577][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.579][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.581][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.582][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:13.583][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.593][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.598][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172633058].
biodb.DEBUG[2024-12-21 16:06:13.599][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:13.600][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:13.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:13.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:13.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:13.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:13.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:13.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:13.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:13.645][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:13.648][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:06:13.650][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9701d2e1a6b096cdfd56943877648611".
biodb.TRACE[2024-12-21 16:06:13.651][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:06:13.654][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content".
biodb.DEBUG[2024-12-21 16:06:13.656][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:13.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:13.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:13.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:13.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:13.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:13.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:13.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:13.671][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.676][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.681][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:13.682][private$selectFields]
biodb.TRACE[2024-12-21 16:06:13.683][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:13.684][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:13.685][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:13.686][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.688][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.690][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.691][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.692][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.695][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.696][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:13.697][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:13.698][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.699][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.702][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.703][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:13.704][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.709][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.714][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.719][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2024-12-21 16:06:13.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:13.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:13.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:13.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:13.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:13.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:13.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:13.733][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.743][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:13.744][private$selectFields]
biodb.TRACE[2024-12-21 16:06:13.745][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:13.746][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:13.747][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:13.748][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.750][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.752][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.753][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.754][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.757][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.758][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:13.759][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:13.760][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.762][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.764][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.765][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:13.766][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.771][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.776][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.781][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172626062].
biodb.DEBUG[2024-12-21 16:06:13.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:13.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:13.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:13.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:13.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:13.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:13.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:13.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.801][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.805][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:13.806][private$selectFields]
biodb.TRACE[2024-12-21 16:06:13.807][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:13.809][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:13.810][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:13.811][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.812][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.814][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.816][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.817][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.819][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.820][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:13.822][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:13.823][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.824][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.826][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.827][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:13.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.833][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.838][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.843][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172621906].
biodb.DEBUG[2024-12-21 16:06:13.844][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:13.846][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:13.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:13.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:13.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:13.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:13.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:13.859][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:13.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:13.867][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:13.870][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:06:13.872][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ce15c6e17e9ed97ba06e918ccdf7a5ba".
biodb.TRACE[2024-12-21 16:06:13.873][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:06:13.875][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content".
biodb.DEBUG[2024-12-21 16:06:13.877][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:13.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:13.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:13.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:13.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:13.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:13.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:13.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:13.892][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.902][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:13.903][private$selectFields]
biodb.TRACE[2024-12-21 16:06:13.904][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:13.905][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:13.906][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:13.908][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.909][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.911][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.912][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.913][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.923][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.924][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:13.926][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:13.927][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.928][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.931][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.932][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:13.933][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.938][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.943][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.948][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172617828].
biodb.DEBUG[2024-12-21 16:06:13.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:13.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:13.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:13.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:13.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:13.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:13.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:13.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.968][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.973][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:13.974][private$selectFields]
biodb.TRACE[2024-12-21 16:06:13.975][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:13.976][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:13.977][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:13.978][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.980][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.982][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.983][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.984][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.987][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.988][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:13.989][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:13.990][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.991][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:13.994][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:13.995][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:13.996][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:13.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.001][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.006][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.011][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172612147].
biodb.DEBUG[2024-12-21 16:06:14.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:14.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:14.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:14.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:14.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:14.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:14.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:14.025][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.030][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.035][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.036][private$selectFields]
biodb.TRACE[2024-12-21 16:06:14.037][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:14.038][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:14.040][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.041][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.042][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.044][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.046][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.047][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.049][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.050][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.052][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.053][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.054][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.056][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.057][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:14.059][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.063][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.068][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.073][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172608842].
biodb.DEBUG[2024-12-21 16:06:14.074][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:14.075][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:14.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:14.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:14.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:14.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:14.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:14.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:14.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:14.119][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:14.123][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:06:14.124][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-12-21 16:06:14.126][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:06:14.128][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-12-21 16:06:14.130][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:14.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:14.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:14.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:14.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:14.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:14.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:14.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:14.145][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.150][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.155][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.156][private$selectFields]
biodb.TRACE[2024-12-21 16:06:14.157][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:14.158][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:14.159][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.161][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.162][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.164][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.165][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.167][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.169][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.170][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.171][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.172][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.174][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.176][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.177][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:14.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.188][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.193][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417118].
biodb.DEBUG[2024-12-21 16:06:14.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:14.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:14.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:14.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:14.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:14.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:14.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:14.208][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.212][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.217][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.218][private$selectFields]
biodb.TRACE[2024-12-21 16:06:14.219][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:14.221][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:14.222][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.223][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.224][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.226][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.228][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.229][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.231][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.232][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.234][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.235][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.236][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.238][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.239][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:14.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.245][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.250][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.255][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172414340].
biodb.DEBUG[2024-12-21 16:06:14.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:14.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:14.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:14.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:14.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:14.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:14.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:14.270][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.275][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.280][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.281][private$selectFields]
biodb.TRACE[2024-12-21 16:06:14.282][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:14.283][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:14.284][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.286][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.287][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.289][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.290][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.292][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.294][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.295][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.296][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.297][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.299][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.301][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.302][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:14.303][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.308][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.313][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.318][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172414267].
biodb.DEBUG[2024-12-21 16:06:14.319][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:14.321][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:14.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:14.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:14.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:14.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:14.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:14.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:14.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:14.349][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:14.353][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:06:14.355][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-12-21 16:06:14.356][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:06:14.358][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-12-21 16:06:14.360][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:14.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:14.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:14.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:14.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:14.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:14.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:14.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:14.376][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.386][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.387][private$selectFields]
biodb.TRACE[2024-12-21 16:06:14.388][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:14.389][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:14.390][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.391][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.393][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.395][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.396][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.397][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.400][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.401][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.402][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.403][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.404][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.407][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.408][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:14.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.424][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529292].
biodb.DEBUG[2024-12-21 16:06:14.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:14.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:14.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:14.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:14.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:14.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:14.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:14.439][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.443][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.448][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.450][private$selectFields]
biodb.TRACE[2024-12-21 16:06:14.451][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:14.452][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:14.453][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.454][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.456][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.458][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.459][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.461][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.463][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.464][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.465][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.466][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.468][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.470][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.471][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:14.472][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.477][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.482][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.487][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529260].
biodb.DEBUG[2024-12-21 16:06:14.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:14.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:14.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:14.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:14.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:14.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:14.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:14.502][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.507][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.512][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.513][private$selectFields]
biodb.TRACE[2024-12-21 16:06:14.514][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:14.515][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:14.516][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.517][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.519][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.521][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.522][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.523][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.525][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.527][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.528][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.529][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.530][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.532][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.534][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:14.535][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.540][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.544][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.549][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172524779].
biodb.DEBUG[2024-12-21 16:06:14.551][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:14.552][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:14.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:14.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:14.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:14.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:14.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:14.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:14.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:14.597][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:14.600][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:06:14.601][cch$loadFileContent] Trying to load 1 files from cache: [1]: "897c6c1cf86bb233833a030ee6928dbf".
biodb.TRACE[2024-12-21 16:06:14.603][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:06:14.605][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content".
biodb.DEBUG[2024-12-21 16:06:14.607][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:14.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:14.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:14.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:14.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:14.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:14.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:14.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:14.622][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.627][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.632][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.633][private$selectFields]
biodb.TRACE[2024-12-21 16:06:14.634][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:14.635][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:14.636][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.638][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.639][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.641][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.642][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.644][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.646][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.647][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.649][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.650][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.651][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.653][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.655][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:14.656][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.661][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.666][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.671][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2024-12-21 16:06:14.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:14.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:14.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:14.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:14.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:14.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:14.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:14.686][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.691][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.696][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.697][private$selectFields]
biodb.TRACE[2024-12-21 16:06:14.699][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:14.700][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:14.701][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.702][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.704][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.706][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.707][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.708][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.711][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.712][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.713][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.714][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.716][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.718][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.719][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:14.721][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.725][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.730][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.736][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172628475].
biodb.DEBUG[2024-12-21 16:06:14.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:14.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:14.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:14.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:14.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:14.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:14.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:14.759][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.764][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.769][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.770][private$selectFields]
biodb.TRACE[2024-12-21 16:06:14.771][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:14.773][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:14.774][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.775][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.776][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.779][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.780][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.781][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.784][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.785][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.786][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.787][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.789][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.791][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.792][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:14.794][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.799][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.804][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.809][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172627886].
biodb.DEBUG[2024-12-21 16:06:14.810][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:14.811][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:14.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:14.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:14.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:14.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:14.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:14.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:14.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:14.832][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:14.836][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:06:14.837][cch$loadFileContent] Trying to load 1 files from cache: [1]: "56a93d3214bbb5417ad13002a40518e8".
biodb.TRACE[2024-12-21 16:06:14.839][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:06:14.841][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content".
biodb.DEBUG[2024-12-21 16:06:14.843][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:14.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:14.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:14.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:14.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:14.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:14.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:14.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:14.861][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.866][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.871][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.872][private$selectFields]
biodb.TRACE[2024-12-21 16:06:14.873][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:14.874][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:14.875][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.876][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.878][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.880][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.881][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.882][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.885][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.886][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.887][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.888][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.890][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.892][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.893][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:14.894][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.899][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.904][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.909][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172635342].
biodb.DEBUG[2024-12-21 16:06:14.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:14.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:14.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:14.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:14.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:14.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:14.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:14.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.929][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.934][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.935][private$selectFields]
biodb.TRACE[2024-12-21 16:06:14.937][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:14.938][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:14.939][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.940][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.942][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.944][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.945][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.947][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.949][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.950][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.951][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.953][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.954][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.956][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.957][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:14.959][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.964][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.968][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.974][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634104].
biodb.DEBUG[2024-12-21 16:06:14.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:14.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:14.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:14.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:14.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:14.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:14.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:14.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.993][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:14.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:14.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:14.998][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:14.999][private$selectFields]
biodb.TRACE[2024-12-21 16:06:15.001][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:15.002][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:15.003][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:15.004][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.005][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.008][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.009][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.010][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.012][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.014][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:15.015][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:15.016][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.017][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.020][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.021][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:15.022][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.027][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.037][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172633058].
biodb.DEBUG[2024-12-21 16:06:15.038][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:15.039][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-21 16:06:15.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:15.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:15.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:15.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:15.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:15.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:15.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:15.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:15.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:15.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:15.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:15.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:15.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:15.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:15.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:15.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:15.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:15.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:15.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:15.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:15.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:15.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:15.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:15.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:15.125][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:15.129][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:06:15.130][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:06:15.132][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-12-21 16:06:15.202][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-12-21 16:06:15.203][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-12-21 16:06:15.205][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-12-21 16:06:15.207][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-12-21 16:06:15.272][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-21 16:06:15.275][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content"
biodb.TRACE[2024-12-21 16:06:15.280][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.request"
biodb.DEBUG[2024-12-21 16:06:15.282][private$loadEntries] Creating entries from ids [1]: "172632169".
biodb.DEBUG[2024-12-21 16:06:15.284][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-21 16:06:15.285][cch$loadFileContent] Trying to load 1 files from cache: [1]: "172632169".
biodb.TRACE[2024-12-21 16:06:15.287][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-21 16:06:15.288][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-21 16:06:15.290][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-12-21 16:06:15.291][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-21 16:06:15.292][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-21 16:06:15.293][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-12-21 16:06:15.295][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-12-21 16:06:15.305][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172632169/XML".
biodb.DEBUG[2024-12-21 16:06:15.309][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:06:15.310][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:06:15.312][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172632169/XML".
biodb.TRACE[2024-12-21 16:06:15.389][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172632169/XML).
biodb.TRACE[2024-12-21 16:06:15.480][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172632169.xml"
biodb.DEBUG[2024-12-21 16:06:15.483][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-21 16:06:15.485][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-12-21 16:06:15.486][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-12-21 16:06:15.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:15.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:15.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:15.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:15.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:15.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:15.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:15.504][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:15.505][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:15.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.507][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:15.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:15.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.514][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:15.515][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:15.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.517][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:15.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:15.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.524][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:15.525][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:15.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.528][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:15.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:15.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.534][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:15.535][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:15.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.537][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:15.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:15.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.544][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:15.545][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:15.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.547][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:15.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:15.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.554][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:15.555][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:15.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.557][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:15.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:15.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.564][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:15.565][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:15.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.567][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.569][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:15.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:15.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.574][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:15.575][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:15.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.578][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.579][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:15.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:15.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.584][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:15.585][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:15.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.588][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:15.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:15.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.594][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:15.595][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:15.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.598][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:15.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:15.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.604][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:15.605][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:15.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.608][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.609][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:15.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:15.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.614][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:15.615][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:15.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.618][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:15.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:15.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.624][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:15.625][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:15.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.628][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.629][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:15.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:15.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.634][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:15.635][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:15.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.638][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.639][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:15.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:15.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.644][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:06:15.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:15.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.649][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:15.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:15.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.654][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:15.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:15.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.659][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:06:15.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:15.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.663][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:15.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:15.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:15.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:15.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.673][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:06:15.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:15.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:15.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:15.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.683][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:15.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:15.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.687][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:06:15.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:15.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.692][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:15.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:15.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:15.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:15.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.702][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:06:15.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:15.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:15.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:15.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:15.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:15.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.716][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:15.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:15.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.721][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:15.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:15.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.736][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:15.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:15.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:15.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:15.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:15.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:15.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:15.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:15.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:15.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:15.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:15.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:15.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:15.769][self$createEntryFromContent] Accession numbers: 172632169.
biodb.DEBUG[2024-12-21 16:06:15.771][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:15.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:15.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:15.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:15.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:15.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:15.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:15.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:15.786][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.796][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:15.797][private$selectFields]
biodb.TRACE[2024-12-21 16:06:15.798][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:15.799][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:15.800][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:15.801][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.803][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.805][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.806][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.807][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.810][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.811][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:15.812][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:15.813][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.814][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.817][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.818][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:15.819][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.824][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.834][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172632169].
biodb.DEBUG[2024-12-21 16:06:15.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:15.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:15.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:15.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:15.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:15.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:15.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:15.849][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.854][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.858][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:15.860][private$selectFields]
biodb.TRACE[2024-12-21 16:06:15.861][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:15.862][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:15.863][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:15.864][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.865][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.877][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.878][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.880][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.882][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.884][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:15.885][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:15.886][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.888][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.890][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.891][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:15.892][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.902][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.908][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2024-12-21 16:06:15.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:15.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:15.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:15.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:15.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:15.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:15.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:15.923][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.928][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.933][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:15.934][private$selectFields]
biodb.TRACE[2024-12-21 16:06:15.935][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:15.936][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:15.937][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:15.939][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.940][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.942][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.943][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.945][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.947][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.948][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:15.949][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:15.950][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.952][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.954][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.955][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:15.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.961][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.966][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:15.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:15.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:15.971][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172626062].
biodb.DEBUG[2024-12-21 16:06:15.972][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:15.974][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:15.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:15.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:15.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:15.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:15.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:15.987][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:15.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:15.995][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:15.998][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:06:16.000][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:06:16.002][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-12-21 16:06:16.090][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-12-21 16:06:16.092][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-12-21 16:06:16.093][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-12-21 16:06:16.095][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-12-21 16:06:16.147][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-21 16:06:16.150][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content"
biodb.TRACE[2024-12-21 16:06:16.155][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.request"
biodb.DEBUG[2024-12-21 16:06:16.158][private$loadEntries] Creating entries from ids [1]: "172622436".
biodb.DEBUG[2024-12-21 16:06:16.160][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-21 16:06:16.162][cch$loadFileContent] Trying to load 1 files from cache: [1]: "172622436".
biodb.TRACE[2024-12-21 16:06:16.163][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-21 16:06:16.165][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-21 16:06:16.166][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-12-21 16:06:16.167][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-21 16:06:16.169][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-21 16:06:16.170][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-12-21 16:06:16.171][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-12-21 16:06:16.173][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172622436/XML".
biodb.DEBUG[2024-12-21 16:06:16.176][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:06:16.177][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:06:16.179][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172622436/XML".
biodb.TRACE[2024-12-21 16:06:16.283][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172622436/XML).
biodb.TRACE[2024-12-21 16:06:16.365][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172622436.xml"
biodb.DEBUG[2024-12-21 16:06:16.367][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-21 16:06:16.369][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-12-21 16:06:16.371][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-12-21 16:06:16.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:16.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:16.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:16.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:16.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:16.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:16.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:16.387][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:16.389][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:16.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.391][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:16.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:16.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.397][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:16.399][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:16.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.401][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:16.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:16.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.408][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:16.409][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:16.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.411][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:16.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:16.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.417][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:16.419][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:16.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.421][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:16.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:16.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.427][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:16.429][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:16.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.431][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:16.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:16.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.437][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:16.439][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:16.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.441][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:16.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:16.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.447][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:16.449][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:16.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.451][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.452][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:16.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:16.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.457][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:16.458][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:16.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.461][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.462][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:16.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:16.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.467][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:16.468][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:16.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.471][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:16.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:16.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.477][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:16.478][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:16.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.481][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:16.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:16.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.487][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:16.488][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:16.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.491][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.492][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:16.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:16.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.497][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:16.498][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:16.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.501][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:16.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:16.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.507][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:16.508][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:16.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.511][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.512][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:16.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:16.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.517][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:16.518][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:16.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.521][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.522][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:16.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:16.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.527][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:06:16.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:16.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:16.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:16.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:16.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:16.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.541][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:06:16.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:16.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:16.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:16.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:16.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:16.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.556][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:06:16.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:16.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.561][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:16.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:16.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:16.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:16.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.570][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:06:16.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:16.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:16.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:16.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:16.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:16.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.584][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:06:16.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:16.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.589][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:16.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:16.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:16.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:16.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.611][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:16.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:16.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.616][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:16.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:16.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.631][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:16.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:16.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:16.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:16.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:16.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:16.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:16.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:16.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:16.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:16.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:16.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:16.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:16.665][self$createEntryFromContent] Accession numbers: 172622436.
biodb.DEBUG[2024-12-21 16:06:16.667][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:16.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:16.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:16.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:16.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:16.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:16.680][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:16.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:16.682][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.692][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:16.693][private$selectFields]
biodb.TRACE[2024-12-21 16:06:16.694][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:16.695][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:16.696][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:16.697][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.699][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.701][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.702][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.703][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.706][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.707][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:16.708][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:16.709][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.711][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.713][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.714][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:16.715][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.725][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.730][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634706].
biodb.DEBUG[2024-12-21 16:06:16.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:16.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:16.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:16.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:16.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:16.743][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:16.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:16.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.750][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.755][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:16.756][private$selectFields]
biodb.TRACE[2024-12-21 16:06:16.757][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:16.758][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:16.759][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:16.760][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.762][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.764][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.765][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.766][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.769][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.770][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:16.771][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:16.772][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.774][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.776][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.777][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:16.778][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.783][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.793][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172629519].
biodb.DEBUG[2024-12-21 16:06:16.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:16.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:16.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:16.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:16.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:16.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:16.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:16.808][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.817][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:16.819][private$selectFields]
biodb.TRACE[2024-12-21 16:06:16.820][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:16.821][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:16.822][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:16.823][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.824][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.827][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.828][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.829][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.831][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.833][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:16.834][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:16.835][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.836][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.838][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.840][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:16.841][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.856][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172622436].
biodb.DEBUG[2024-12-21 16:06:16.857][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:16.858][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:16.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:16.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:16.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:16.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:16.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:16.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:16.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:16.903][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:16.906][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:06:16.908][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-12-21 16:06:16.909][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:06:16.912][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-12-21 16:06:16.914][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:16.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:16.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:16.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:16.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:16.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:16.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:16.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:16.929][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.938][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:16.940][private$selectFields]
biodb.TRACE[2024-12-21 16:06:16.941][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:16.942][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:16.943][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:16.944][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.945][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.948][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.949][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.950][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.952][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.954][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:16.955][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:16.956][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.957][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.959][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.961][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:16.962][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.967][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.971][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.976][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172431267].
biodb.DEBUG[2024-12-21 16:06:16.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:16.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:16.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:16.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:16.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:16.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:16.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:16.991][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:16.996][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:16.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:16.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.001][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:17.002][private$selectFields]
biodb.TRACE[2024-12-21 16:06:17.003][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:17.004][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:17.005][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:17.006][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.008][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.010][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.018][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.020][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.023][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.024][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:17.025][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:17.026][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.028][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.030][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.031][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:17.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.037][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.047][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417440].
biodb.DEBUG[2024-12-21 16:06:17.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:17.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:17.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:17.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:17.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:17.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:17.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:17.062][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.072][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:17.073][private$selectFields]
biodb.TRACE[2024-12-21 16:06:17.074][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:17.075][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:17.076][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:17.078][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.079][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.081][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.082][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.084][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.086][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.087][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:17.088][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:17.089][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.091][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.093][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.094][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:17.095][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.100][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.105][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.110][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172414169].
biodb.DEBUG[2024-12-21 16:06:17.111][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:17.112][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:17.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:17.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:17.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:17.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:17.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:17.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:17.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:17.134][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:17.137][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:06:17.139][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-12-21 16:06:17.141][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:06:17.143][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-12-21 16:06:17.145][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:17.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:17.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:17.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:17.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:17.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:17.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:17.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:17.160][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.165][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.170][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:17.171][private$selectFields]
biodb.TRACE[2024-12-21 16:06:17.172][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:17.173][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:17.174][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:17.176][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.177][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.179][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.180][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.182][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.184][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.185][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:17.186][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:17.187][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.189][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.191][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.192][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:17.193][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.198][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.203][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.208][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634706].
biodb.DEBUG[2024-12-21 16:06:17.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:17.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:17.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:17.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:17.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:17.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:17.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:17.223][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.227][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.232][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:17.233][private$selectFields]
biodb.TRACE[2024-12-21 16:06:17.234][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:17.236][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:17.237][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:17.238][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.239][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.241][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.243][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.244][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.246][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.247][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:17.249][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:17.250][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.251][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.253][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.254][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:17.256][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.260][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.265][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.270][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172629519].
biodb.DEBUG[2024-12-21 16:06:17.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:17.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:17.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:17.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:17.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:17.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:17.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:17.285][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.290][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.294][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:17.295][private$selectFields]
biodb.TRACE[2024-12-21 16:06:17.297][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:17.298][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:17.299][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:17.300][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.301][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.304][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.305][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.306][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.308][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.309][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:17.311][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:17.312][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.313][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.315][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.316][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:17.318][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.322][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.327][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:17.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.332][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172621093].
biodb.DEBUG[2024-12-21 16:06:17.334][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:17.335][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:17.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:17.362][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:17.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:17.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:17.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:17.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:17.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:17.379][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:17.382][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:06:17.384][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:06:17.386][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-12-21 16:06:17.463][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-12-21 16:06:17.464][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-12-21 16:06:17.466][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-12-21 16:06:17.467][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-12-21 16:06:17.524][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-21 16:06:17.527][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content"
biodb.TRACE[2024-12-21 16:06:17.531][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.request"
biodb.DEBUG[2024-12-21 16:06:17.534][private$loadEntries] Creating entries from ids [1]: "172627878".
biodb.DEBUG[2024-12-21 16:06:17.536][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-21 16:06:17.537][cch$loadFileContent] Trying to load 1 files from cache: [1]: "172627878".
biodb.TRACE[2024-12-21 16:06:17.539][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-21 16:06:17.540][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-21 16:06:17.542][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-12-21 16:06:17.543][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-21 16:06:17.544][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-21 16:06:17.545][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-12-21 16:06:17.547][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-12-21 16:06:17.549][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172627878/XML".
biodb.DEBUG[2024-12-21 16:06:17.558][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:06:17.562][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:06:17.564][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172627878/XML".
biodb.TRACE[2024-12-21 16:06:17.666][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172627878/XML).
biodb.TRACE[2024-12-21 16:06:17.891][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172627878.xml"
biodb.DEBUG[2024-12-21 16:06:17.894][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-21 16:06:17.895][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-12-21 16:06:17.897][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-12-21 16:06:17.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:17.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:17.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:17.908][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:17.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:17.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:17.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:17.914][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:17.915][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:17.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.918][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:17.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:17.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.924][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:17.926][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:17.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.928][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:17.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:17.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.935][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:17.936][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:17.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.938][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:17.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:17.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.945][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:17.946][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:17.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.948][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:17.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:17.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.955][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:17.956][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:17.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.958][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:17.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:17.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.965][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:17.966][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:17.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.968][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:17.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:17.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.975][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:17.976][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:17.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.978][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.980][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-21 16:06:17.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:17.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.985][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:17.986][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:17.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.988][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.990][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:17.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:17.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:17.995][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:17.996][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:17.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:17.998][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:18.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:18.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.005][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:18.006][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:18.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.009][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:18.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:18.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.015][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:18.017][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:18.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.019][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.020][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:18.022][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:18.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.024][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-21 16:06:18.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:18.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.030][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:18.032][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:18.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.034][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.036][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:18.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:18.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.041][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:18.042][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:18.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.044][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.046][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:18.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:18.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.051][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-21 16:06:18.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:18.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:18.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:18.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.061][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:18.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:18.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.065][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-21 16:06:18.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:18.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:18.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:18.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:18.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:18.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.080][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-21 16:06:18.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:18.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:18.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:18.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:18.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:18.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.094][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-21 16:06:18.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:18.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.099][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:18.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:18.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:18.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:18.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.109][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-21 16:06:18.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:18.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.113][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:18.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:18.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.118][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:18.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:18.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.123][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:18.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:18.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.134][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:18.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:18.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.144][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:18.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:18.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:18.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:18.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:18.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:18.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:18.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:18.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:18.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:18.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:18.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:18.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:18.178][self$createEntryFromContent] Accession numbers: 172627878.
biodb.DEBUG[2024-12-21 16:06:18.179][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:18.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:18.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:18.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:18.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:18.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:18.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:18.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:18.194][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.199][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.204][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.205][private$selectFields]
biodb.TRACE[2024-12-21 16:06:18.206][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:18.208][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:18.209][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.210][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.211][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.213][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.215][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.216][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.218][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.219][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.220][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.222][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.223][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.225][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.226][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:18.228][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.232][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.237][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.242][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172628475].
biodb.DEBUG[2024-12-21 16:06:18.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:18.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:18.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:18.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:18.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:18.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:18.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:18.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.261][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.266][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.267][private$selectFields]
biodb.TRACE[2024-12-21 16:06:18.269][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:18.270][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:18.271][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.272][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.273][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.276][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.277][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.278][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.280][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.289][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.292][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.294][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.295][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.298][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.299][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:18.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.316][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172627886].
biodb.DEBUG[2024-12-21 16:06:18.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:18.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:18.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:18.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:18.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:18.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:18.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:18.331][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.336][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.341][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.342][private$selectFields]
biodb.TRACE[2024-12-21 16:06:18.343][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:18.344][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:18.345][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.347][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.348][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.350][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.351][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.352][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.355][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.356][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.357][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.358][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.360][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.362][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.363][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:18.364][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.379][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172627878].
biodb.DEBUG[2024-12-21 16:06:18.380][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:18.381][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:18.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:18.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:18.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:18.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:18.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:18.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:18.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:18.402][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:18.406][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-21 16:06:18.407][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-21 16:06:18.409][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-12-21 16:06:18.480][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-12-21 16:06:18.482][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-12-21 16:06:18.484][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-12-21 16:06:18.485][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-12-21 16:06:18.539][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-21 16:06:18.542][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content"
biodb.TRACE[2024-12-21 16:06:18.547][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.request"
biodb.DEBUG[2024-12-21 16:06:18.550][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:18.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:18.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:18.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:18.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:18.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:18.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:18.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:18.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.570][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.575][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.576][private$selectFields]
biodb.TRACE[2024-12-21 16:06:18.577][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:18.579][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:18.580][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.581][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.582][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.584][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.586][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.587][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.589][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.590][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.592][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.593][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.594][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.596][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.597][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:18.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.603][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.608][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.613][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172635342].
biodb.DEBUG[2024-12-21 16:06:18.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:18.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:18.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:18.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:18.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:18.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:18.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:18.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.633][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.637][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.639][private$selectFields]
biodb.TRACE[2024-12-21 16:06:18.640][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:18.641][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:18.642][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.643][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.644][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.647][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.648][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.649][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.651][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.652][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.654][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.655][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.656][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.658][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.659][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:18.661][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.665][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.670][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.675][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634706].
biodb.DEBUG[2024-12-21 16:06:18.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:18.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:18.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:18.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:18.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:18.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:18.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:18.690][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.695][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.700][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.701][private$selectFields]
biodb.TRACE[2024-12-21 16:06:18.702][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:18.703][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:18.704][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.705][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.707][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.709][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.710][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.711][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.713][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.715][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.716][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.717][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.718][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.721][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.722][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:18.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.728][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.732][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.738][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634104].
biodb.DEBUG[2024-12-21 16:06:18.739][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:18.740][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:18.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:18.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:18.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:18.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:18.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:18.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:18.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:18.785][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:18.788][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:06:18.790][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8ad32143f99567438eba281a371befbc".
biodb.TRACE[2024-12-21 16:06:18.791][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:06:18.793][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content".
biodb.DEBUG[2024-12-21 16:06:18.796][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:18.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:18.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:18.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:18.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:18.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:18.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:18.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:18.811][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.816][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.830][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.831][private$selectFields]
biodb.TRACE[2024-12-21 16:06:18.833][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:18.834][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:18.835][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.837][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.838][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.841][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.842][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.843][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.845][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.847][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.848][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.849][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.850][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.853][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.854][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:18.855][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.860][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.865][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.870][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172632169].
biodb.DEBUG[2024-12-21 16:06:18.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:18.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:18.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:18.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:18.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:18.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:18.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:18.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.890][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.895][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.896][private$selectFields]
biodb.TRACE[2024-12-21 16:06:18.897][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:18.898][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:18.900][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.901][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.902][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.904][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.905][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.907][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.909][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.910][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.911][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.912][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.914][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.916][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.917][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:18.918][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.923][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.928][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.933][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2024-12-21 16:06:18.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:18.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:18.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:18.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:18.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:18.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:18.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:18.948][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.958][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.959][private$selectFields]
biodb.TRACE[2024-12-21 16:06:18.960][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:18.961][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:18.962][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.963][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.965][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.967][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.968][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.969][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.972][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.973][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.974][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:18.975][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.976][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.979][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.980][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:18.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.991][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:18.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:18.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:18.996][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172626062].
biodb.DEBUG[2024-12-21 16:06:18.997][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:18.998][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:19.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:19.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:19.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:19.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:19.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:19.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:19.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:19.019][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:19.023][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:06:19.024][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ead2a4c6d4c972bfbf7c3e8a0e8299c8".
biodb.TRACE[2024-12-21 16:06:19.026][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:06:19.028][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content".
biodb.DEBUG[2024-12-21 16:06:19.030][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:19.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:19.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:19.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:19.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:19.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:19.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:19.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:19.047][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.057][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.058][private$selectFields]
biodb.TRACE[2024-12-21 16:06:19.059][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:19.060][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:19.061][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.063][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.064][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.066][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.067][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.069][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.071][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.072][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.073][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.074][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.076][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.078][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.079][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:19.080][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.085][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.095][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634706].
biodb.DEBUG[2024-12-21 16:06:19.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:19.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:19.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:19.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:19.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:19.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:19.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:19.110][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.115][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.120][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.121][private$selectFields]
biodb.TRACE[2024-12-21 16:06:19.122][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:19.123][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:19.124][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.126][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.128][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.131][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.132][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.134][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.136][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.137][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.138][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.140][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.141][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.143][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.144][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:19.146][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.150][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.155][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.160][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172629519].
biodb.DEBUG[2024-12-21 16:06:19.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:19.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:19.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:19.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:19.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:19.173][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:19.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:19.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.180][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.185][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.186][private$selectFields]
biodb.TRACE[2024-12-21 16:06:19.187][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:19.188][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:19.189][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.191][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.192][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.194][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.195][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.197][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.199][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.200][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.201][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.203][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.204][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.206][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.207][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:19.209][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.218][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.223][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172622436].
biodb.DEBUG[2024-12-21 16:06:19.225][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:19.226][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:19.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:19.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:19.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:19.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:19.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:19.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:19.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:19.281][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:19.284][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:06:19.286][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-12-21 16:06:19.288][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:06:19.290][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-12-21 16:06:19.292][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:19.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:19.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:19.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:19.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:19.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:19.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:19.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:19.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.317][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.318][private$selectFields]
biodb.TRACE[2024-12-21 16:06:19.319][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:19.321][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:19.322][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.323][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.324][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.326][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.328][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.329][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.331][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.332][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.334][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.335][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.336][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.338][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.340][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:19.341][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.346][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.351][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.356][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172431267].
biodb.DEBUG[2024-12-21 16:06:19.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:19.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:19.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:19.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:19.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:19.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:19.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:19.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.376][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.380][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.382][private$selectFields]
biodb.TRACE[2024-12-21 16:06:19.383][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:19.384][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:19.385][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.386][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.388][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.390][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.391][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.392][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.395][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.396][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.397][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.398][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.400][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.402][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.403][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:19.404][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.419][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417440].
biodb.DEBUG[2024-12-21 16:06:19.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:19.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:19.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:19.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:19.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:19.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:19.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:19.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.439][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.444][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.445][private$selectFields]
biodb.TRACE[2024-12-21 16:06:19.446][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:19.447][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:19.448][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.450][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.451][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.453][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.454][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.456][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.458][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.459][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.460][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.461][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.463][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.465][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.466][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:19.467][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.472][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.477][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.482][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172414169].
biodb.DEBUG[2024-12-21 16:06:19.483][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:19.485][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:19.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:19.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:19.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:19.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:19.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:19.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:19.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:19.506][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:19.509][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:06:19.511][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-12-21 16:06:19.513][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:06:19.515][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-12-21 16:06:19.517][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:19.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:19.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:19.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:19.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:19.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:19.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:19.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:19.532][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.537][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.542][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.543][private$selectFields]
biodb.TRACE[2024-12-21 16:06:19.544][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:19.545][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:19.546][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.548][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.549][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.551][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.552][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.554][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.556][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.557][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.558][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.560][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.561][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.563][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.564][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:19.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.570][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.575][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.580][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634706].
biodb.DEBUG[2024-12-21 16:06:19.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:19.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:19.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:19.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:19.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:19.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:19.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:19.595][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.600][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.605][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.606][private$selectFields]
biodb.TRACE[2024-12-21 16:06:19.607][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:19.608][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:19.609][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.610][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.612][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.614][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.615][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.616][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.619][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.620][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.621][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.622][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.624][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.626][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.627][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:19.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.633][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.638][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.643][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172629519].
biodb.DEBUG[2024-12-21 16:06:19.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:19.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:19.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:19.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:19.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:19.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:19.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:19.667][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.672][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.676][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.678][private$selectFields]
biodb.TRACE[2024-12-21 16:06:19.679][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:19.680][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:19.681][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.682][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.684][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.686][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.687][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.689][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.691][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.692][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.694][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.695][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.696][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.698][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.700][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:19.701][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.706][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.716][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172621093].
biodb.DEBUG[2024-12-21 16:06:19.717][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:19.718][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:19.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:19.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:19.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:19.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:19.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:19.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:19.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:19.764][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:19.768][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:06:19.770][cch$loadFileContent] Trying to load 1 files from cache: [1]: "93b38cb571769a97b3321f7f5a86241a".
biodb.TRACE[2024-12-21 16:06:19.771][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:06:19.773][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content".
biodb.DEBUG[2024-12-21 16:06:19.776][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:19.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:19.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:19.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:19.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:19.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:19.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:19.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:19.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.801][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.802][private$selectFields]
biodb.TRACE[2024-12-21 16:06:19.803][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:19.804][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:19.806][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.807][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.808][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.810][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.812][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.813][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.815][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.816][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.818][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.819][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.820][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.822][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.824][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:19.825][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.830][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.835][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.840][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172628475].
biodb.DEBUG[2024-12-21 16:06:19.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:19.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:19.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:19.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:19.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:19.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:19.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:19.855][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.864][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.865][private$selectFields]
biodb.TRACE[2024-12-21 16:06:19.866][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:19.868][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:19.869][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.870][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.871][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.873][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.875][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.876][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.878][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.879][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.881][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.882][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.883][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.885][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.886][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:19.888][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.893][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.903][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172627886].
biodb.DEBUG[2024-12-21 16:06:19.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:19.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:19.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:19.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:19.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:19.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:19.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:19.918][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.922][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.927][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.928][private$selectFields]
biodb.TRACE[2024-12-21 16:06:19.929][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:19.931][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:19.932][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.933][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.934][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.936][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.938][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.939][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.941][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.942][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.944][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:19.945][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.946][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.948][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.950][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:19.951][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:19.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:19.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:19.966][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172627878].
biodb.DEBUG[2024-12-21 16:06:19.967][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:19.968][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:19.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:19.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:19.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:19.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:19.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:19.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:19.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:19.989][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:19.993][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:06:19.994][cch$loadFileContent] Trying to load 1 files from cache: [1]: "405cf707472983a89dc9e0092ca888ad".
biodb.TRACE[2024-12-21 16:06:19.996][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:06:19.998][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content".
biodb.DEBUG[2024-12-21 16:06:20.000][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:20.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:20.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:20.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:20.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:20.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:20.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:20.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:20.015][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.020][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.025][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:20.026][private$selectFields]
biodb.TRACE[2024-12-21 16:06:20.027][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:20.028][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:20.030][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:20.031][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.032][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.034][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.036][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.037][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.039][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.040][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:20.042][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:20.043][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.044][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.046][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.047][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:20.049][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.054][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.058][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.072][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172635342].
biodb.DEBUG[2024-12-21 16:06:20.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:20.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:20.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:20.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:20.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:20.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:20.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:20.087][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.092][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.097][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:20.098][private$selectFields]
biodb.TRACE[2024-12-21 16:06:20.099][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:20.101][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:20.102][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:20.103][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.104][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.107][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.108][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.109][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.112][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.113][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:20.114][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:20.115][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.117][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.119][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.120][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:20.121][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.134][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.141][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634706].
biodb.DEBUG[2024-12-21 16:06:20.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:20.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:20.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:20.151][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:20.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:20.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:20.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:20.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.161][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.166][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:20.167][private$selectFields]
biodb.TRACE[2024-12-21 16:06:20.168][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:20.169][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:20.170][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:20.171][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.173][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.175][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.176][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.177][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.180][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.181][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:20.182][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-21 16:06:20.184][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.185][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.187][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.188][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-21 16:06:20.190][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.195][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.200][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.205][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634104].
biodb.DEBUG[2024-12-21 16:06:20.206][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:20.207][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-21 16:06:20.231][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-21 16:06:20.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-21 16:06:20.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.237][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-21 16:06:20.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-21 16:06:20.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-21 16:06:20.247][biodb::testThat]
biodb.INFO [2024-12-21 16:06:20.248][biodb::testThat] Running test function test_annotateMzValues_additional_fields (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2024-12-21 16:06:20.250][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:06:20.251][biodb::testThat]
biodb.TRACE[2024-12-21 16:06:20.255][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-21 16:06:20.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-21 16:06:20.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.260][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-21 16:06:20.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-21 16:06:20.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:20.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:20.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:20.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:20.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:20.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:20.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:20.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:20.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.284][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:20.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:20.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:20.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:20.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:20.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:20.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:20.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:20.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:20.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:20.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:20.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:20.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:20.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:20.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:20.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:20.326][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:20.329][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:06:20.331][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-12-21 16:06:20.333][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:06:20.335][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-12-21 16:06:20.337][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:20.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:20.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:20.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:20.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:20.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:20.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:20.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:20.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:20.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:20.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:20.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:20.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:20.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:20.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:20.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:20.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:20.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:20.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.376][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:20.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:20.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:20.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:20.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:20.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:20.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:20.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:20.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:20.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:20.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.401][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:20.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:20.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.406][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:20.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:20.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.411][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:20.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:20.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.415][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:20.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:20.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:20.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:20.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:20.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:20.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:20.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:20.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.435][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:20.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:20.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.442][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:20.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:20.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.448][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:20.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:20.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:20.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:20.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:20.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:20.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:20.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:20.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:20.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:20.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.473][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:20.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:20.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.477][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:20.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:20.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.482][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.495][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.501][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:20.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:20.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.505][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:20.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:20.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.510][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:20.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:20.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.515][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:20.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:20.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.520][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:20.521][private$selectFields]
biodb.TRACE[2024-12-21 16:06:20.522][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:20.524][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:20.525][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:20.526][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:20.527][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:20.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.530][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.531][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:20.532][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:20.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.535][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.536][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:20.537][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:20.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.539][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.541][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:20.542][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:20.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.544][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.545][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:20.546][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:20.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.549][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.550][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:20.551][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:20.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.553][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.555][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:20.556][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:20.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.558][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.559][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:20.560][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:20.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.563][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.564][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:20.565][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:20.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.567][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.568][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:20.570][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:20.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.572][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.573][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:20.574][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:20.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.577][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.578][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:20.579][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:20.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.581][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.582][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:20.584][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:20.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.586][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.587][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.588][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.591][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.592][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:20.593][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:20.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.595][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.596][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:20.598][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:20.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.600][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.601][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:20.603][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:20.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.605][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.606][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:20.607][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:20.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.610][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.611][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:20.612][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:20.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.614][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.616][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:20.617][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:20.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.619][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.620][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:20.622][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:20.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.624][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.625][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:20.626][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:20.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.628][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.630][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:20.631][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:20.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.633][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.634][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:20.636][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:20.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.638][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.639][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:20.640][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:20.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.642][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.644][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:20.645][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:20.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.647][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.648][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:20.650][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:20.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.652][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.653][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:20.654][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:20.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.657][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.658][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:20.659][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:20.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.661][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.662][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.664][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.666][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.667][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:20.668][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:20.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.670][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.672][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:20.673][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:20.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.675][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.676][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:20.678][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:20.679][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:20.680][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:20.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.682][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.683][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:20.685][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:20.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.687][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.688][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:20.689][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:20.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.691][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.693][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:20.694][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:20.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.696][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.697][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:20.699][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:20.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.701][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.702][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:20.703][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:20.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.706][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.707][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:20.708][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:20.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.710][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.711][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:20.713][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:20.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.715][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.716][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:20.717][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:20.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.720][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.721][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:20.722][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:20.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.724][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.725][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:20.727][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:20.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.729][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.730][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:20.731][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:20.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.733][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.735][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:20.736][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:20.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.738][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.739][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.740][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.743][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.744][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:20.745][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:20.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.747][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.749][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:20.750][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:20.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.752][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.753][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-21 16:06:20.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:20.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:20.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:20.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:20.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:20.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:20.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:20.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:20.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:20.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:20.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:20.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:20.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:20.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:20.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:20.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:20.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:20.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:20.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:20.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:20.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.802][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:20.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:20.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:20.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:20.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:20.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:20.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.817][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:20.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:20.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:20.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:20.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.827][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:20.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:20.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:20.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:20.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.836][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:20.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:20.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.841][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:20.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:20.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:20.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:20.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.851][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:20.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:20.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:20.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:20.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:20.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:20.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.865][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:20.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:20.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.870][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:20.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:20.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:20.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:20.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:20.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:20.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.911][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:20.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:20.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.916][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:20.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:20.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.920][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:20.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:20.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:20.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:20.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:20.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:20.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:20.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:20.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:20.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:20.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:20.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:20.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:20.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:20.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.955][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:20.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:20.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.960][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:20.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:20.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.965][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:20.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:20.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.974][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.979][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:20.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:20.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:20.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.989][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:20.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:20.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.994][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:20.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:20.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:20.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:20.999][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:21.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:21.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.003][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:21.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:21.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.008][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:21.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:21.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.022][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172417118, 2-(2-pyrazol-1-ylethoxy)pyridin-3-amine, 2-[2-(1-pyrazolyl)ethoxy]-3-pyridinamine, 2-(2-pyrazol-1-ylethoxy)pyridin-3-amine, 2-(2-pyrazol-1-ylethoxy)pyridin-3-amine, ...].
biodb.DEBUG[2024-12-21 16:06:21.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:21.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:21.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:21.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:21.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:21.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:21.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:21.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:21.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:21.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:21.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:21.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.046][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:21.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:21.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.051][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:21.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:21.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:21.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:21.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:21.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:21.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:21.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:21.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:21.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:21.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:21.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:21.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.079][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:21.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:21.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:21.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:21.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:21.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:21.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.094][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:21.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:21.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.098][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:21.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:21.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.103][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:21.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:21.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.108][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:21.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:21.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:21.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:21.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:21.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:21.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.122][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:21.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:21.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.128][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:21.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:21.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:21.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:21.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:21.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:21.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:21.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:21.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:21.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:21.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.152][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:21.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:21.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.157][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:21.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:21.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:21.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:21.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.167][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:21.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:21.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.171][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:21.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:21.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.176][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:21.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:21.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.181][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:21.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:21.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.186][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:21.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:21.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.191][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:21.192][private$selectFields]
biodb.TRACE[2024-12-21 16:06:21.193][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:21.194][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:21.195][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:21.196][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:21.197][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:21.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.200][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.201][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:21.202][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:21.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.204][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.206][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:21.207][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:21.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.209][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.210][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:21.212][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:21.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.214][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.215][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:21.216][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:21.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.218][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.220][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:21.221][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:21.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.223][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.224][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:21.226][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:21.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.228][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.229][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:21.230][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:21.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.232][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.234][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:21.235][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:21.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.237][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.238][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:21.239][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:21.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.242][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.243][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:21.244][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:21.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.246][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.248][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:21.249][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:21.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.251][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.252][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:21.253][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:21.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.256][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.257][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:21.258][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:21.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.260][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.261][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:21.263][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:21.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.265][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.266][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:21.267][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:21.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.270][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.271][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:21.272][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:21.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.274][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.275][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:21.277][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:21.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.279][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.280][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:21.281][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:21.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.284][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.285][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:21.286][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:21.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.296][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.298][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:21.299][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:21.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.301][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.302][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:21.304][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:21.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.306][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.307][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:21.308][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:21.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.311][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.312][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:21.313][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:21.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.316][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.317][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:21.318][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:21.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.320][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.322][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:21.323][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:21.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.325][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.327][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:21.328][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:21.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.330][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.331][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:21.333][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:21.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.335][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.336][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:21.337][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:21.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.340][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.341][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:21.342][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:21.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.345][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.346][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:21.347][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:21.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.349][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.351][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:21.352][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:21.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.354][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.355][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:21.356][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:21.358][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:21.359][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:21.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.361][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.362][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:21.364][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:21.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.366][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.367][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:21.368][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:21.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.370][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.372][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:21.373][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:21.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.375][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.376][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:21.378][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:21.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.380][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.381][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:21.382][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:21.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.385][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.386][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:21.387][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:21.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.389][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.391][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:21.392][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:21.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.394][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.395][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:21.397][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:21.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.399][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.400][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:21.401][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:21.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.404][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.405][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:21.406][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:21.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.408][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.409][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:21.411][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:21.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.413][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.414][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:21.415][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:21.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.418][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.419][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:21.420][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:21.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.422][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.423][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:21.425][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:21.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.427][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.428][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:21.429][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:21.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.432][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.433][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-21 16:06:21.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:21.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:21.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:21.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:21.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:21.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:21.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.449][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:21.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:21.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:21.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:21.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:21.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:21.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.463][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:21.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:21.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.468][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:21.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:21.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:21.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:21.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.478][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:21.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:21.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.482][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:21.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:21.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.487][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:21.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:21.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:21.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:21.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:21.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:21.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:21.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:21.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.506][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:21.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:21.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:21.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:21.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:21.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:21.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.521][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:21.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:21.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.525][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:21.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:21.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.530][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:21.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:21.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:21.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:21.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.540][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:21.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:21.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.544][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:21.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:21.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:21.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:21.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.554][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:21.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:21.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:21.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:21.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.564][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:21.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:21.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.568][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:21.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:21.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.573][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:21.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:21.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:21.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:21.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:21.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:21.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:21.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:21.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:21.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:21.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:21.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:21.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:21.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:21.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.607][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:21.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:21.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.611][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:21.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:21.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.616][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:21.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:21.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:21.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:21.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.626][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:21.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:21.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.631][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:21.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:21.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.636][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:21.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:21.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.640][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:21.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:21.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.645][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:21.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:21.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.650][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:21.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:21.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.655][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:21.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:21.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.659][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:21.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:21.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.671][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172414340, N-ethyl-3-methyl-imidazo[4,5-b]pyridine-2-carboxamide, N-ethyl-3-methyl-2-imidazo[4,5-b]pyridinecarboxamide, N-ethyl-3-methylimidazo[4,5-b]pyridine-2-carboxamide, N-ethyl-3-methyl-imidazo[4,5-b]pyridine-2-carboxamide, ...].
biodb.DEBUG[2024-12-21 16:06:21.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:21.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:21.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:21.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:21.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:21.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:21.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:21.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:21.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:21.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:21.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:21.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.704][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:21.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:21.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:21.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:21.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:21.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:21.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:21.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:21.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:21.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:21.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:21.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:21.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:21.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:21.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:21.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:21.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:21.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:21.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:21.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:21.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.753][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:21.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:21.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.758][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:21.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:21.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.763][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:21.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:21.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.768][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:21.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:21.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.772][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:21.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:21.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.777][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:21.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:21.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.782][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:21.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:21.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.787][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:21.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:21.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:21.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:21.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:21.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:21.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:21.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:21.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:21.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:21.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.811][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:21.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:21.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.816][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:21.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:21.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.820][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:21.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:21.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.825][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:21.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:21.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.830][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:21.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:21.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.835][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:21.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:21.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.839][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:21.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:21.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.844][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:21.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:21.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.849][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:21.850][private$selectFields]
biodb.TRACE[2024-12-21 16:06:21.851][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:21.852][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:21.853][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:21.855][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:21.856][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:21.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.858][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.859][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:21.861][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:21.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.863][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.864][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:21.865][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:21.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.868][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.869][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:21.870][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:21.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.872][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.873][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:21.875][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:21.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.877][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.878][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:21.879][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:21.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.882][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.883][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:21.884][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:21.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.886][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.887][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:21.889][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:21.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.891][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.892][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:21.893][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:21.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.895][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.897][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:21.898][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:21.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.900][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.901][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:21.902][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:21.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.905][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.906][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:21.907][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:21.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.909][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.910][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:21.912][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:21.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.914][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.915][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:21.916][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:21.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.919][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.920][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:21.921][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:21.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.923][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.924][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:21.926][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:21.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.928][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.929][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:21.930][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:21.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.933][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.934][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:21.935][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:21.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.937][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.938][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:21.940][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:21.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.942][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.943][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:21.944][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:21.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.946][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.948][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:21.949][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:21.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.951][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.952][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:21.954][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:21.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.956][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.957][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:21.958][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:21.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.960][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.962][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:21.963][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:21.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.965][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.966][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:21.967][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:21.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.970][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.971][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:21.972][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:21.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.974][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.975][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:21.977][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:21.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.979][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.980][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:21.981][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:21.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.984][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.985][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:21.986][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:21.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.988][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.989][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:21.991][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:21.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.993][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.994][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:21.995][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:21.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:21.997][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:21.999][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:22.000][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:22.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.002][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.003][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:22.005][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:22.006][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:22.007][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:22.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.009][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.010][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:22.012][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:22.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.014][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.015][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:22.016][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:22.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.019][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.020][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:22.021][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:22.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.023][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.024][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:22.026][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:22.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.028][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.029][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:22.030][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:22.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.033][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.034][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:22.035][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:22.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.037][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.038][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:22.040][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:22.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.042][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.043][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:22.044][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:22.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.046][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.048][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:22.049][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:22.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.051][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.052][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:22.053][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:22.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.056][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.057][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:22.058][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:22.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.060][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.062][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:22.063][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:22.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.065][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.066][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:22.067][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:22.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.077][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.079][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:22.080][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:22.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.082][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.083][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:22.085][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:22.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.087][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.088][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-21 16:06:22.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:22.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:22.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:22.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:22.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:22.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:22.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:22.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:22.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:22.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:22.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:22.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:22.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.119][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:22.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:22.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:22.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:22.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:22.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:22.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:22.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:22.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:22.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:22.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:22.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:22.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:22.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:22.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:22.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:22.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:22.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:22.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:22.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:22.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:22.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:22.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:22.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:22.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.179][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:22.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:22.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.183][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:22.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:22.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.188][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:22.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:22.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:22.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:22.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:22.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:22.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.203][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:22.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:22.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.208][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:22.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:22.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.212][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:22.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:22.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.217][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:22.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:22.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.222][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:22.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:22.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.227][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:22.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:22.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.231][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:22.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:22.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:22.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:22.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:22.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:22.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:22.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:22.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:22.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:22.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:22.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:22.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:22.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:22.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.265][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:22.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:22.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.270][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:22.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:22.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.275][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:22.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:22.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.280][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:22.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:22.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.285][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:22.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:22.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:22.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:22.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.294][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:22.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:22.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.299][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:22.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:22.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.304][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:22.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:22.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.309][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:22.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:22.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.313][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:22.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:22.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.318][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:22.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:22.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.330][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172414267, 6-amino-1-isopropyl-pyrido[2,3-d]pyrimidin-4-one, 6-amino-1-propan-2-yl-4-pyrido[2,3-d]pyrimidinone, 6-amino-1-propan-2-ylpyrido[2,3-d]pyrimidin-4-one, 6-azanyl-1-propan-2-yl-pyrido[2,3-d]pyrimidin-4-one, ...].
biodb.DEBUG[2024-12-21 16:06:22.331][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:22.332][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:22.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:22.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:22.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:22.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:22.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:22.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:22.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:22.355][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:22.358][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:06:22.360][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-12-21 16:06:22.361][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:06:22.363][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-12-21 16:06:22.366][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:22.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:22.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:22.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:22.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:22.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:22.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:22.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:22.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:22.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:22.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:22.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:22.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:22.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:22.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.395][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:22.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:22.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:22.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:22.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:22.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:22.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:22.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:22.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.414][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:22.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:22.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:22.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:22.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:22.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:22.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:22.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:22.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:22.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:22.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.445][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:22.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:22.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.450][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:22.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:22.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:22.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:22.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.460][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:22.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:22.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.464][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:22.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:22.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:22.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:22.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.482][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:22.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:22.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.487][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:22.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:22.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:22.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:22.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:22.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:22.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:22.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:22.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:22.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:22.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.511][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:22.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:22.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.516][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:22.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:22.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.521][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:22.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:22.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.526][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:22.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:22.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.531][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:22.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:22.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.536][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:22.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:22.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.540][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:22.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:22.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.545][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:22.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:22.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.550][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:22.551][private$selectFields]
biodb.TRACE[2024-12-21 16:06:22.552][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:22.553][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:22.554][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:22.556][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:22.557][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:22.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.559][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.560][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:22.561][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:22.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.564][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.565][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:22.566][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:22.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.568][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.570][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:22.571][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:22.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.573][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.575][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:22.576][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:22.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.578][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.579][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:22.581][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:22.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.583][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.584][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:22.585][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:22.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.587][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.589][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:22.590][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:22.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.592][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.593][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:22.595][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:22.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.597][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.598][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:22.599][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:22.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.601][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.603][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:22.604][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:22.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.606][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.607][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:22.609][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:22.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.611][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.612][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:22.613][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:22.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.615][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.617][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:22.618][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:22.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.620][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.621][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:22.622][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:22.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.625][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.626][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:22.627][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:22.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.629][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.631][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:22.632][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:22.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.634][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.635][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:22.637][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:22.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.639][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.640][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:22.641][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:22.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.644][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.645][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:22.646][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:22.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.648][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.649][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:22.651][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:22.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.653][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.654][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:22.655][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:22.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.658][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.659][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:22.660][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:22.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.662][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.663][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:22.665][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:22.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.667][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.668][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:22.669][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:22.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.671][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.673][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:22.674][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:22.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.676][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.677][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:22.678][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:22.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.681][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.682][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:22.683][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:22.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.685][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.687][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:22.688][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:22.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.690][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.691][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:22.692][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:22.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.695][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.696][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:22.697][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:22.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.699][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.701][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:22.702][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:22.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.704][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.705][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:22.706][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:22.708][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:22.709][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:22.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.711][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.712][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:22.713][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:22.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.716][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.717][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:22.718][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:22.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.720][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.721][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:22.723][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:22.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.725][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.726][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:22.727][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:22.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.730][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.731][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:22.732][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:22.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.734][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.735][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:22.737][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:22.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.739][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.740][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:22.741][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:22.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.743][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.745][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:22.746][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:22.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.748][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.749][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:22.750][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:22.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.753][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.754][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:22.755][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:22.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.757][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.759][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:22.760][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:22.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.762][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.763][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:22.765][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:22.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.767][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.768][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:22.769][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:22.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.771][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.773][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:22.774][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:22.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.776][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.777][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:22.779][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:22.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.781][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.782][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-21 16:06:22.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:22.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:22.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:22.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:22.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:22.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:22.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:22.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:22.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:22.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:22.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:22.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:22.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:22.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:22.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.817][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:22.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:22.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:22.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:22.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.827][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:22.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:22.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:22.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:22.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.836][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:22.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:22.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:22.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:22.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.846][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:22.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:22.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.850][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:22.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:22.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:22.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:22.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:22.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:22.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:22.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:22.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.878][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:22.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:22.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.882][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:22.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:22.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.887][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:22.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:22.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.892][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:22.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:22.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:22.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:22.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:22.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:22.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:22.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:22.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.912][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:22.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:22.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:22.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:22.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.922][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:22.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:22.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.927][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:22.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:22.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.932][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:22.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:22.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:22.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:22.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:22.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:22.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:22.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:22.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:22.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:22.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:22.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:22.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:22.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:22.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.965][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:22.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:22.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.970][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:22.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:22.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.975][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:22.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:22.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:22.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:22.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:22.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:22.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:22.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:22.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.995][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:22.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:22.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:22.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:22.999][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:23.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:23.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.004][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:23.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:23.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.009][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:23.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:23.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.014][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:23.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:23.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.019][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:23.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:23.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.031][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172529292, (2S,4R)-4-[(3-fluoro-2-pyridyl)oxy]pyrrolidine-2-carboxylic acid, (2S,4R)-4-[(3-fluoro-2-pyridinyl)oxy]-2-pyrrolidinecarboxylic acid, (2S,4R)-4-(3-fluoropyridin-2-yl)oxypyrrolidine-2-carboxylic acid, (2S,4R)-4-(3-fluoranylpyridin-2-yl)oxypyrrolidine-2-carboxylic acid, ...].
biodb.DEBUG[2024-12-21 16:06:23.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:23.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:23.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:23.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:23.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:23.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:23.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:23.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:23.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:23.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:23.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:23.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.055][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:23.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:23.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:23.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:23.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:23.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:23.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:23.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:23.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.074][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:23.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:23.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.079][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:23.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:23.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:23.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:23.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.088][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:23.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:23.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:23.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:23.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:23.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:23.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.103][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:23.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:23.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.107][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:23.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:23.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.112][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:23.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:23.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:23.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:23.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:23.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:23.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:23.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:23.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.134][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:23.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:23.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.141][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:23.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:23.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:23.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:23.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:23.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:23.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.155][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:23.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:23.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:23.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:23.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.165][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:23.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:23.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.170][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:23.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:23.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:23.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:23.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:23.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:23.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.184][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:23.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:23.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.189][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:23.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:23.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.193][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:23.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:23.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.198][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:23.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:23.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.203][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:23.204][private$selectFields]
biodb.TRACE[2024-12-21 16:06:23.205][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:23.206][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:23.207][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:23.208][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:23.210][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:23.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.212][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.213][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:23.214][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:23.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.217][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.218][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:23.219][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:23.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.221][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.222][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:23.224][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:23.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.226][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.227][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:23.228][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:23.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.230][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.232][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:23.233][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:23.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.235][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.236][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:23.238][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:23.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.240][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.241][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:23.242][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:23.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.244][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.245][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:23.247][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:23.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.249][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.250][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:23.251][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:23.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.261][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.263][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:23.264][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:23.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.266][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.268][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:23.269][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:23.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.271][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.272][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:23.274][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:23.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.276][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.277][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:23.279][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:23.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.281][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.282][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:23.283][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:23.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.286][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.287][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:23.288][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:23.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.291][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.292][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:23.293][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:23.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.295][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.297][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:23.298][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:23.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.300][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.301][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:23.303][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:23.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.305][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.306][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:23.308][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:23.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.310][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.311][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:23.312][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:23.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.315][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.316][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:23.317][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:23.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.319][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.320][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:23.322][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:23.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.324][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.325][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:23.326][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:23.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.329][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.330][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:23.331][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:23.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.333][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.334][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:23.336][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:23.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.338][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.339][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:23.340][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:23.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.343][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.344][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:23.345][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:23.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.347][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.348][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:23.350][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:23.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.352][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.353][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:23.354][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:23.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.357][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.358][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:23.359][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:23.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.361][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.363][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:23.364][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:23.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.366][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.367][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:23.368][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:23.370][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:23.371][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:23.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.373][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.374][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:23.376][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:23.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.378][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.379][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:23.380][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:23.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.383][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.384][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:23.385][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:23.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.387][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.388][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:23.390][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:23.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.392][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.393][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:23.394][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:23.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.397][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.398][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:23.399][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:23.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.401][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.402][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:23.404][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:23.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.406][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.407][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:23.408][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:23.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.410][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.412][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:23.413][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:23.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.415][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.416][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:23.418][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:23.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.420][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.421][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:23.422][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:23.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.425][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.426][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:23.427][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:23.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.429][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.430][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:23.432][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:23.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.434][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.435][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:23.436][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:23.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.439][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.440][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:23.441][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:23.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.443][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.445][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-21 16:06:23.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:23.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:23.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:23.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:23.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:23.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:23.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:23.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:23.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:23.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:23.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:23.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:23.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.475][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:23.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:23.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:23.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:23.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:23.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:23.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:23.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:23.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.494][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:23.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:23.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:23.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:23.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.503][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:23.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:23.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:23.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:23.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:23.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:23.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:23.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:23.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:23.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:23.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:23.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:23.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.532][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:23.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:23.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.536][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:23.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:23.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.541][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:23.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:23.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.546][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:23.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:23.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:23.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:23.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.555][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:23.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:23.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:23.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:23.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.565][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:23.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:23.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:23.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:23.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.575][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:23.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:23.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.579][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:23.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:23.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.584][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:23.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:23.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:23.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:23.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:23.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:23.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:23.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:23.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:23.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:23.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:23.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:23.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:23.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:23.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.618][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:23.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:23.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.622][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:23.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:23.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.627][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:23.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:23.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.632][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:23.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:23.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.637][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:23.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:23.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.641][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:23.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:23.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.654][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:23.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:23.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.659][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:23.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:23.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.664][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:23.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:23.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.669][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:23.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:23.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.674][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:23.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:23.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.679][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:23.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:23.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.692][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172529260, (2S,4R)-4-[(5-fluoro-2-pyridyl)oxy]pyrrolidine-2-carboxylic acid, (2S,4R)-4-[(5-fluoro-2-pyridinyl)oxy]-2-pyrrolidinecarboxylic acid, (2S,4R)-4-(5-fluoropyridin-2-yl)oxypyrrolidine-2-carboxylic acid, (2S,4R)-4-(5-fluoranylpyridin-2-yl)oxypyrrolidine-2-carboxylic acid, ...].
biodb.DEBUG[2024-12-21 16:06:23.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:23.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:23.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:23.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:23.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:23.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:23.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:23.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:23.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:23.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:23.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:23.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:23.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:23.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:23.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:23.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:23.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:23.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:23.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:23.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.735][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:23.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:23.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.740][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:23.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:23.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:23.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:23.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.750][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:23.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:23.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:23.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:23.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:23.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:23.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.764][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:23.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:23.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.769][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:23.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:23.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.774][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:23.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:23.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:23.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:23.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:23.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:23.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.788][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:23.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:23.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.793][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:23.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:23.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.798][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:23.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:23.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:23.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:23.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:23.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:23.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:23.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:23.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:23.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:23.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.842][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:23.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:23.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.850][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:23.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:23.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:23.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:23.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:23.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:23.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.875][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:23.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:23.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.883][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:23.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:23.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.892][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:23.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:23.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.900][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:23.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:23.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.908][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:23.910][private$selectFields]
biodb.TRACE[2024-12-21 16:06:23.912][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:23.914][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:23.916][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:23.918][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:23.920][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:23.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.924][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.926][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:23.928][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:23.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.932][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.934][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:23.936][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:23.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.940][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.942][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:23.944][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:23.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.948][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.950][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:23.952][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:23.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.956][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.958][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:23.960][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:23.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.964][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.966][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:23.968][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:23.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.972][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.974][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:23.977][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:23.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.980][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.982][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:23.985][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:23.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.988][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.989][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:23.991][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:23.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.994][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:23.995][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:23.996][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:23.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:23.998][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.000][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:24.001][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:24.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.003][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.004][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:24.005][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:24.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.008][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.009][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:24.010][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:24.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.012][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.013][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:24.015][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:24.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.017][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.018][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:24.019][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:24.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.022][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.023][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:24.024][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:24.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.026][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.027][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:24.029][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:24.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.031][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.032][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:24.033][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:24.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.036][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.037][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:24.038][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:24.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.040][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.041][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:24.043][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:24.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.045][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.046][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:24.047][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:24.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.049][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.051][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:24.052][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:24.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.054][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.055][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:24.057][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:24.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.059][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.060][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:24.061][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:24.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.063][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.065][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:24.066][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:24.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.068][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.069][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:24.070][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:24.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.073][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.074][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:24.075][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:24.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.077][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.079][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:24.080][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:24.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.082][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.083][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:24.084][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:24.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.087][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.088][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:24.089][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:24.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.091][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.092][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:24.094][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:24.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.096][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.097][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:24.098][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:24.100][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:24.101][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:24.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.103][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.104][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:24.105][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:24.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.108][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.109][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:24.110][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:24.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.112][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.120][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:24.122][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:24.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.125][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.126][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:24.128][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:24.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.130][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.132][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:24.133][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:24.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.135][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.136][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:24.138][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:24.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.140][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.141][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:24.142][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:24.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.145][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.146][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:24.147][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:24.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.150][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.151][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:24.152][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:24.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.154][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.156][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:24.157][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:24.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.159][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.160][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:24.162][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:24.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.164][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.165][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:24.166][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:24.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.169][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.170][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:24.171][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:24.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.174][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.175][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:24.176][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:24.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.178][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.179][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:24.181][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:24.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.183][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.184][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-21 16:06:24.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:24.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:24.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:24.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:24.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:24.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:24.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:24.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:24.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:24.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:24.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:24.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:24.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:24.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:24.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.219][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:24.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:24.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:24.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:24.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.229][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:24.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:24.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:24.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:24.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:24.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:24.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:24.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:24.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:24.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:24.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:24.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:24.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:24.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:24.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.262][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:24.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:24.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.267][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:24.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:24.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.272][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:24.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:24.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.276][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:24.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:24.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.281][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:24.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:24.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.286][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:24.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:24.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.291][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:24.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:24.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:24.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:24.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:24.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:24.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.305][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:24.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:24.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:24.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:24.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.315][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:24.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:24.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.319][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:24.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:24.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.324][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:24.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:24.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:24.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:24.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:24.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:24.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:24.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:24.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:24.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:24.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:24.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:24.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:24.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:24.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.357][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:24.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:24.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.362][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:24.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:24.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.367][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:24.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:24.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.372][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:24.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:24.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.376][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:24.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:24.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:24.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:24.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.386][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:24.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:24.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.391][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:24.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:24.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.395][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:24.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:24.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.400][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:24.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:24.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.405][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:24.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:24.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.410][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:24.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:24.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.421][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172524779, ethyl 6-methoxy-5-nitro-pyridine-3-carboxylate, 6-methoxy-5-nitro-3-pyridinecarboxylic acid ethyl ester, ethyl 6-methoxy-5-nitropyridine-3-carboxylate, ethyl 6-methoxy-5-nitro-pyridine-3-carboxylate, ...].
biodb.DEBUG[2024-12-21 16:06:24.422][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:24.424][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:24.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:24.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:24.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:24.441][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:24.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:24.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:24.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:24.451][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:24.454][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:06:24.456][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-12-21 16:06:24.457][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:06:24.459][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-12-21 16:06:24.461][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:24.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:24.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:24.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:24.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:24.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:24.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:24.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:24.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:24.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:24.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:24.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:24.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.486][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:24.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:24.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:24.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:24.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.495][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:24.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:24.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:24.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:24.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:24.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:24.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:24.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:24.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:24.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:24.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:24.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:24.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:24.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:24.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:24.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:24.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.543][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:24.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:24.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.548][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:24.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:24.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.553][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:24.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:24.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:24.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:24.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.562][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:24.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:24.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.567][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:24.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:24.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.572][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:24.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:24.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.576][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:24.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:24.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:24.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:24.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:24.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:24.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:24.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:24.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:24.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:24.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.600][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:24.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:24.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.605][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:24.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:24.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.610][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:24.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:24.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.615][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:24.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:24.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.619][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:24.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:24.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.624][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:24.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:24.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.629][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:24.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:24.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.633][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:24.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:24.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.638][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:24.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:24.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.643][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:24.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:24.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.648][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:24.649][private$selectFields]
biodb.TRACE[2024-12-21 16:06:24.650][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:24.651][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:24.652][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:24.654][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:24.655][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:24.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.657][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.658][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:24.659][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:24.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.662][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.663][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:24.664][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:24.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.666][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.668][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:24.669][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:24.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.671][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.672][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:24.674][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:24.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.676][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.677][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:24.678][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:24.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.681][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.682][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:24.683][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:24.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.685][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.686][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:24.688][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:24.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.690][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.691][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:24.692][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:24.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.695][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.696][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:24.697][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:24.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.699][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.700][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:24.702][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:24.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.704][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.705][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:24.706][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:24.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.708][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.710][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:24.711][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:24.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.713][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.714][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:24.715][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:24.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.718][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.719][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:24.720][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:24.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.722][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.723][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:24.725][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:24.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.727][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.728][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:24.729][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:24.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.731][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.733][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:24.734][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:24.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.736][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.737][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:24.739][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:24.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.741][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.742][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:24.743][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:24.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.745][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.747][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:24.748][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:24.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.750][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.751][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:24.752][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:24.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.755][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.756][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:24.757][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:24.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.759][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.760][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:24.762][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:24.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.764][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.765][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:24.766][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:24.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.769][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.770][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:24.771][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:24.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.773][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.774][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:24.776][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:24.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.778][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.779][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:24.780][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:24.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.783][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.784][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:24.785][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:24.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.787][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.788][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:24.790][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:24.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.792][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.793][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:24.794][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:24.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.796][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.797][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:24.799][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:24.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.801][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.802][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:24.803][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:24.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.806][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.807][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:24.808][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:24.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.810][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.811][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:24.813][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:24.814][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:24.815][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:24.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.817][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.818][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:24.820][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:24.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.822][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.823][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:24.824][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:24.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.827][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.828][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:24.829][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:24.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.831][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.832][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:24.834][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:24.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.836][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.837][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:24.838][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:24.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.840][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.842][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:24.843][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:24.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.845][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.846][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:24.847][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:24.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.850][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.851][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:24.852][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:24.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.854][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.855][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:24.857][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:24.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.859][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.860][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:24.861][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:24.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.863][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.865][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:24.866][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:24.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.868][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.869][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:24.870][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:24.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.873][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.874][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:24.875][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:24.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.877][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.879][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:24.880][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:24.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.882][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.883][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:24.884][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:24.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.887][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.895][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-21 16:06:24.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:24.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:24.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:24.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:24.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:24.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:24.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.912][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:24.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:24.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.917][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:24.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:24.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:24.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:24.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.927][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:24.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:24.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:24.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:24.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:24.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:24.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.941][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:24.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:24.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.946][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:24.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:24.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.951][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:24.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:24.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.956][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:24.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:24.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:24.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:24.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.965][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:24.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:24.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:24.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:24.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.975][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:24.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:24.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.979][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:24.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:24.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.984][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:24.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:24.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.989][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:24.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:24.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.994][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:24.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:24.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:24.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:24.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:25.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:25.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:25.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:25.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:25.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:25.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:25.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:25.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:25.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:25.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.023][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:25.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:25.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.028][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:25.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:25.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.032][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:25.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:25.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.037][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:25.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:25.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:25.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:25.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:25.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:25.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:25.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:25.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:25.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:25.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:25.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:25.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:25.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:25.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.071][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:25.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:25.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.076][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:25.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:25.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.081][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:25.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:25.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.086][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:25.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:25.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:25.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:25.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.095][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:25.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:25.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.100][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:25.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:25.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.105][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:25.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:25.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.110][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:25.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:25.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.115][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:25.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:25.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.120][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:25.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:25.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.125][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:25.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:25.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.138][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172417118, 2-(2-pyrazol-1-ylethoxy)pyridin-3-amine, 2-[2-(1-pyrazolyl)ethoxy]-3-pyridinamine, 2-(2-pyrazol-1-ylethoxy)pyridin-3-amine, 2-(2-pyrazol-1-ylethoxy)pyridin-3-amine, ...].
biodb.DEBUG[2024-12-21 16:06:25.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:25.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:25.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:25.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:25.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:25.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:25.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:25.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:25.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:25.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:25.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:25.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.163][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:25.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:25.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:25.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:25.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:25.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:25.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.178][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:25.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:25.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:25.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:25.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.187][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:25.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:25.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:25.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:25.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:25.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:25.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:25.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:25.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:25.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:25.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.211][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:25.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:25.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.216][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:25.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:25.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:25.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:25.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:25.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:25.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:25.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:25.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.234][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:25.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:25.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.239][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:25.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:25.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.244][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:25.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:25.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:25.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:25.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:25.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:25.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:25.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:25.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:25.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:25.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.268][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:25.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:25.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.272][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:25.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:25.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:25.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:25.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.290][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:25.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:25.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.294][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:25.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:25.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.299][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:25.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:25.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.304][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:25.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:25.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.309][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:25.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:25.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.314][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:25.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:25.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.322][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:25.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:25.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.327][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:25.328][private$selectFields]
biodb.TRACE[2024-12-21 16:06:25.330][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:25.331][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:25.332][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:25.333][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:25.335][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:25.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.337][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.338][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:25.340][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:25.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.342][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.343][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:25.345][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:25.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.347][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.348][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:25.350][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:25.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.352][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.354][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:25.355][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:25.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.357][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.358][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:25.360][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:25.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.362][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.363][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:25.367][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:25.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.370][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.371][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:25.373][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:25.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.376][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.377][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:25.378][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:25.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.380][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.382][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:25.383][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:25.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.385][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.386][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:25.388][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:25.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.390][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.391][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:25.393][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:25.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.395][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.396][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:25.397][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:25.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.400][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.401][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:25.402][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:25.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.404][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.406][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:25.407][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:25.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.409][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.410][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:25.412][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:25.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.414][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.415][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:25.416][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:25.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.419][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.420][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:25.421][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:25.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.423][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.425][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:25.426][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:25.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.428][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.430][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:25.431][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:25.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.433][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.434][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:25.436][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:25.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.438][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.439][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:25.440][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:25.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.443][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.444][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:25.445][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:25.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.447][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.449][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:25.450][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:25.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.452][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.453][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:25.455][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:25.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.457][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.458][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:25.459][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:25.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.462][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.463][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:25.464][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:25.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.466][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.468][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:25.469][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:25.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.471][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.472][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:25.474][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:25.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.476][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.477][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:25.478][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:25.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.481][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.482][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:25.483][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:25.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.485][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.487][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:25.488][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:25.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.490][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.491][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:25.492][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:25.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.495][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.496][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:25.497][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:25.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.499][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.501][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:25.502][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:25.503][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:25.504][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:25.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.507][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.508][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:25.509][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:25.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.511][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.512][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:25.514][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:25.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.516][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.517][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:25.518][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:25.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.521][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.522][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:25.523][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:25.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.525][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.527][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:25.528][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:25.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.530][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.531][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:25.533][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:25.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.535][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.536][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:25.537][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:25.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.540][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.541][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:25.542][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:25.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.544][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.545][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:25.547][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:25.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.549][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.550][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:25.551][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:25.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.554][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.555][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:25.556][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:25.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.558][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.559][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:25.561][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:25.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.563][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.564][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:25.565][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:25.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.568][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.569][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:25.570][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:25.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.572][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.574][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:25.575][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:25.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.577][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.578][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-21 16:06:25.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:25.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:25.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:25.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:25.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:25.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:25.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:25.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:25.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:25.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:25.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:25.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:25.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:25.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:25.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:25.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:25.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:25.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:25.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:25.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:25.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.628][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:25.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:25.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:25.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:25.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:25.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:25.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.643][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:25.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:25.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:25.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:25.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:25.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:25.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:25.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:25.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:25.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:25.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.667][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:25.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:25.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.672][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:25.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:25.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.677][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:25.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:25.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.689][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:25.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:25.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:25.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:25.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.699][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:25.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:25.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:25.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:25.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.709][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:25.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:25.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.714][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:25.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:25.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.719][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:25.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:25.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.724][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:25.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:25.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.729][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:25.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:25.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:25.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:25.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:25.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:25.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:25.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:25.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:25.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:25.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:25.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:25.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:25.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:25.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.764][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:25.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:25.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.769][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:25.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:25.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.774][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:25.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:25.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.779][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:25.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:25.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.784][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:25.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:25.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:25.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:25.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.794][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:25.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:25.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.798][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:25.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:25.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.803][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:25.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:25.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.808][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:25.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:25.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.813][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:25.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:25.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.818][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:25.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:25.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.830][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172414340, N-ethyl-3-methyl-imidazo[4,5-b]pyridine-2-carboxamide, N-ethyl-3-methyl-2-imidazo[4,5-b]pyridinecarboxamide, N-ethyl-3-methylimidazo[4,5-b]pyridine-2-carboxamide, N-ethyl-3-methyl-imidazo[4,5-b]pyridine-2-carboxamide, ...].
biodb.DEBUG[2024-12-21 16:06:25.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:25.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:25.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:25.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:25.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:25.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:25.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:25.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:25.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:25.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:25.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:25.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:25.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:25.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:25.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:25.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.865][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:25.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:25.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.869][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:25.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:25.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:25.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:25.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:25.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:25.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:25.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:25.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:25.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:25.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.893][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:25.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:25.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:25.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:25.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.903][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:25.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:25.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.908][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:25.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:25.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.913][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:25.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:25.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:25.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:25.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.922][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:25.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:25.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.927][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:25.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:25.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.932][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:25.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:25.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.936][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:25.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:25.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:25.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:25.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:25.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:25.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:25.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:25.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:25.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:25.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.960][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:25.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:25.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.965][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:25.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:25.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:25.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:25.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:25.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:25.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.980][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:25.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:25.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:25.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:25.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.989][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:25.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:25.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.994][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:25.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:25.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:25.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:25.999][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:26.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:26.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.004][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:26.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:26.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.008][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:26.009][private$selectFields]
biodb.TRACE[2024-12-21 16:06:26.011][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:26.012][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:26.013][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:26.014][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:26.015][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:26.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.018][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.019][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:26.020][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:26.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.022][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.024][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:26.025][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:26.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.027][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.028][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:26.029][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:26.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.032][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.033][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:26.034][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:26.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.036][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.038][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:26.039][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:26.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.041][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.042][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:26.044][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:26.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.046][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.047][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:26.048][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:26.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.051][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.052][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:26.053][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:26.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.055][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.056][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:26.058][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:26.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.060][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.061][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:26.062][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:26.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.065][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.066][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:26.067][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:26.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.069][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.070][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:26.072][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:26.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.082][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.083][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:26.084][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:26.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.087][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.088][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:26.089][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:26.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.092][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.093][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:26.094][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:26.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.096][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.098][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:26.099][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:26.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.101][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.102][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:26.104][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:26.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.106][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.107][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:26.109][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:26.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.111][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.112][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:26.114][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:26.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.116][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.117][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:26.118][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:26.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.121][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.122][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:26.123][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:26.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.126][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.127][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:26.129][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:26.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.132][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.133][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:26.134][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:26.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.136][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.138][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:26.139][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:26.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.141][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.142][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:26.143][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:26.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.146][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.147][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:26.148][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:26.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.150][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.152][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:26.153][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:26.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.155][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.156][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:26.158][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:26.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.160][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.161][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:26.162][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:26.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.165][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.166][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:26.167][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:26.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.169][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.171][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:26.172][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:26.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.174][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.175][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:26.177][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:26.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.179][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.180][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:26.181][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:26.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.184][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.185][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:26.186][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:26.187][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:26.189][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:26.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.191][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.192][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:26.193][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:26.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.196][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.197][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:26.198][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:26.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.200][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.202][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:26.203][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:26.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.205][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.206][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:26.208][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:26.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.210][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.211][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:26.212][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:26.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.215][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.216][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:26.217][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:26.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.219][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.221][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:26.222][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:26.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.224][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.225][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:26.227][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:26.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.229][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.230][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:26.231][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:26.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.234][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.235][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:26.236][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:26.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.238][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.240][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:26.241][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:26.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.243][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.244][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:26.246][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:26.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.248][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.249][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:26.250][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:26.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.253][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.254][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:26.255][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:26.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.257][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.258][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:26.260][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:26.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.262][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.263][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-21 16:06:26.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:26.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:26.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:26.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:26.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:26.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:26.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:26.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:26.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:26.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:26.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:26.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:26.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:26.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:26.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:26.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:26.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:26.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:26.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:26.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:26.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.313][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:26.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:26.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:26.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:26.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:26.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:26.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:26.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:26.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.332][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:26.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:26.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.337][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:26.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:26.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.342][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:26.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:26.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.347][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:26.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:26.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.352][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:26.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:26.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.357][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:26.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:26.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.362][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:26.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:26.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.366][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:26.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:26.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:26.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:26.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:26.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:26.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:26.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:26.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:26.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:26.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.391][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:26.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:26.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.396][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:26.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:26.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.400][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:26.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:26.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.405][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:26.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:26.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:26.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:26.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:26.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:26.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:26.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:26.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:26.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:26.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:26.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:26.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:26.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:26.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.439][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:26.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:26.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.444][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:26.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:26.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.449][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:26.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:26.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.454][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:26.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:26.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.459][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:26.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:26.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.464][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:26.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:26.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.476][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:26.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:26.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.482][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:26.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:26.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.486][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:26.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:26.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.492][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:26.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:26.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.497][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:26.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:26.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.502][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:26.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:26.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.514][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172414267, 6-amino-1-isopropyl-pyrido[2,3-d]pyrimidin-4-one, 6-amino-1-propan-2-yl-4-pyrido[2,3-d]pyrimidinone, 6-amino-1-propan-2-ylpyrido[2,3-d]pyrimidin-4-one, 6-azanyl-1-propan-2-yl-pyrido[2,3-d]pyrimidin-4-one, ...].
biodb.DEBUG[2024-12-21 16:06:26.516][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:26.517][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:26.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:26.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:26.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:26.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:26.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:26.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:26.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:26.539][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:26.543][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:06:26.545][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-12-21 16:06:26.546][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:06:26.548][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-12-21 16:06:26.550][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:26.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:26.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:26.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:26.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:26.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:26.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:26.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:26.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:26.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:26.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:26.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:26.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.576][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:26.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:26.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:26.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:26.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:26.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:26.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:26.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:26.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:26.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:26.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:26.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:26.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:26.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:26.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:26.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:26.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:26.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:26.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:26.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:26.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.624][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:26.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:26.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.629][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:26.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:26.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.634][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:26.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:26.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:26.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:26.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:26.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:26.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:26.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:26.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.653][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:26.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:26.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.657][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:26.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:26.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:26.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:26.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:26.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:26.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:26.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:26.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:26.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:26.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.681][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:26.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:26.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.686][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:26.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:26.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.691][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:26.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:26.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.696][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:26.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:26.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.701][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:26.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:26.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.705][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:26.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:26.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.710][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:26.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:26.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.715][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:26.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:26.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.720][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:26.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:26.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.725][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:26.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:26.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.729][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:26.731][private$selectFields]
biodb.TRACE[2024-12-21 16:06:26.732][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:26.733][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:26.734][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:26.735][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:26.736][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:26.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.739][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.740][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:26.741][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:26.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.743][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.745][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:26.746][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:26.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.748][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.750][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:26.751][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:26.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.753][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.754][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:26.756][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:26.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.758][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.759][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:26.760][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:26.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.763][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.764][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:26.765][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:26.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.767][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.768][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:26.770][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:26.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.772][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.773][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:26.774][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:26.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.777][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.778][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:26.779][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:26.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.781][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.783][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:26.784][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:26.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.787][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.788][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:26.789][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:26.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.792][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.793][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:26.794][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:26.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.796][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.798][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:26.799][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:26.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.801][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.802][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:26.804][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:26.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.806][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.807][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:26.808][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:26.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.811][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.812][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:26.813][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:26.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.815][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.816][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:26.818][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:26.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.820][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.821][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:26.822][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:26.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.825][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.826][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:26.827][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:26.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.829][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.831][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:26.832][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:26.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.834][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.835][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:26.837][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:26.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.839][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.840][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:26.841][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:26.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.844][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.845][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:26.846][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:26.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.848][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.850][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:26.851][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:26.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.853][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.854][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:26.856][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:26.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.858][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.867][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:26.869][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:26.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.871][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.872][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:26.874][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:26.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.876][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.877][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:26.879][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:26.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.881][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.882][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:26.884][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:26.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.886][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.887][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:26.889][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:26.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.891][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.892][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:26.894][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:26.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.896][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.897][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:26.899][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:26.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.901][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.902][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:26.903][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:26.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.906][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.907][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:26.908][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:26.910][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:26.911][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:26.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.913][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.915][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:26.916][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:26.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.918][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.919][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:26.921][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:26.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.923][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.924][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:26.925][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:26.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.928][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.929][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:26.930][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:26.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.932][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.934][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:26.935][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:26.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.937][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.938][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:26.940][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:26.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.942][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.943][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:26.944][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:26.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.947][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.948][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:26.949][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:26.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.951][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.953][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:26.954][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:26.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.956][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.957][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:26.959][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:26.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.961][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.962][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:26.963][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:26.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.966][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.967][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:26.968][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:26.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.970][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.972][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:26.973][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:26.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.975][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.976][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:26.978][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:26.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.980][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.981][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:26.983][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:26.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.985][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.986][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-21 16:06:26.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:26.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:26.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:26.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:26.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:26.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:26.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:26.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:27.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:27.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:27.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:27.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:27.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.012][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:27.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:27.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:27.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:27.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.022][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:27.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:27.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:27.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:27.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:27.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:27.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:27.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:27.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.042][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:27.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:27.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.047][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:27.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:27.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:27.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:27.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:27.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:27.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:27.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:27.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:27.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:27.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:27.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:27.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.076][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:27.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:27.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.081][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:27.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:27.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.086][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:27.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:27.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.091][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:27.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:27.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:27.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:27.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.101][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:27.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:27.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:27.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:27.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:27.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:27.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:27.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:27.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.120][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:27.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:27.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.125][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:27.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:27.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.130][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:27.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:27.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:27.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:27.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:27.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:27.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:27.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:27.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:27.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:27.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:27.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:27.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:27.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:27.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.167][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:27.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:27.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.171][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:27.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:27.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.176][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:27.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:27.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.181][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:27.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:27.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.186][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:27.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:27.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.191][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:27.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:27.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.196][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:27.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:27.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.200][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:27.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:27.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.205][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:27.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:27.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.210][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:27.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:27.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.215][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:27.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:27.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.220][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:27.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:27.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.232][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172529292, (2S,4R)-4-[(3-fluoro-2-pyridyl)oxy]pyrrolidine-2-carboxylic acid, (2S,4R)-4-[(3-fluoro-2-pyridinyl)oxy]-2-pyrrolidinecarboxylic acid, (2S,4R)-4-(3-fluoropyridin-2-yl)oxypyrrolidine-2-carboxylic acid, (2S,4R)-4-(3-fluoranylpyridin-2-yl)oxypyrrolidine-2-carboxylic acid, ...].
biodb.DEBUG[2024-12-21 16:06:27.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:27.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:27.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:27.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:27.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:27.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:27.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:27.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:27.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:27.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:27.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:27.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:27.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:27.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:27.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:27.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:27.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:27.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:27.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:27.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:27.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:27.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:27.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:27.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:27.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:27.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:27.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:27.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:27.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:27.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:27.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:27.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.314][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:27.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:27.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.319][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:27.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:27.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:27.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:27.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:27.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:27.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.334][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:27.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:27.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:27.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:27.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.343][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:27.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:27.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.348][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:27.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:27.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:27.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:27.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:27.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:27.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:27.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:27.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:27.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:27.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.372][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:27.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:27.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.377][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:27.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:27.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:27.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:27.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.387][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:27.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:27.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.392][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:27.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:27.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.397][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:27.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:27.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.402][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:27.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:27.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.406][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:27.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:27.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.411][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:27.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:27.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.416][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:27.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:27.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.421][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:27.422][private$selectFields]
biodb.TRACE[2024-12-21 16:06:27.423][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:27.424][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:27.426][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:27.427][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:27.428][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:27.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.430][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.432][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:27.433][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:27.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.435][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.436][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:27.438][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:27.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.440][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.441][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:27.442][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:27.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.445][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.446][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:27.447][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:27.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.449][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.451][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:27.452][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:27.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.454][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.455][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:27.457][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:27.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.459][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.460][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:27.461][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:27.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.464][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.465][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:27.466][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:27.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.468][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.469][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:27.471][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:27.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.473][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.474][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:27.475][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:27.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.478][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.479][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:27.480][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:27.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.482][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.483][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:27.485][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:27.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.487][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.488][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:27.489][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:27.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.492][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.493][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:27.494][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:27.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.496][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.498][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:27.499][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:27.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.501][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.502][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:27.503][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:27.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.506][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.507][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:27.508][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:27.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.510][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.512][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:27.513][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:27.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.515][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.516][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:27.518][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:27.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.520][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.521][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:27.522][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:27.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.525][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.526][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:27.527][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:27.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.529][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.531][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:27.532][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:27.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.534][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.535][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:27.537][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:27.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.539][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.540][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:27.541][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:27.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.544][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.545][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:27.546][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:27.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.549][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.550][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:27.551][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:27.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.553][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.555][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:27.556][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:27.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.558][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.559][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:27.561][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:27.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.563][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.564][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:27.565][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:27.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.568][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.569][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:27.570][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:27.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.572][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.574][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:27.575][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:27.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.577][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.579][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:27.580][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:27.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.582][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.583][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:27.584][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:27.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.587][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.588][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:27.589][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:27.591][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:27.592][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:27.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.594][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.595][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:27.597][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:27.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.599][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.600][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:27.601][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:27.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.604][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.605][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:27.606][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:27.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.608][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.609][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:27.611][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:27.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.613][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.614][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:27.615][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:27.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.618][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.619][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:27.620][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:27.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.622][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.624][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:27.625][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:27.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.627][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.628][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:27.629][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:27.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.632][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.633][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:27.634][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:27.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.636][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.638][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:27.639][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:27.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.641][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.642][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:27.644][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:27.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.646][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.647][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:27.648][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:27.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.659][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.660][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:27.661][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:27.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.664][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.665][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:27.666][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:27.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.668][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.670][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:27.671][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:27.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.673][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.675][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-21 16:06:27.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:27.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:27.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:27.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:27.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:27.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:27.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:27.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:27.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:27.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:27.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.701][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:27.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:27.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:27.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:27.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:27.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:27.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:27.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:27.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:27.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:27.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:27.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:27.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:27.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:27.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:27.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:27.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.740][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:27.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:27.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:27.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:27.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.750][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:27.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:27.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:27.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:27.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:27.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:27.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.765][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:27.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:27.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.770][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:27.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:27.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.775][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:27.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:27.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:27.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:27.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:27.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:27.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:27.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:27.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.795][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:27.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:27.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.800][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:27.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:27.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:27.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:27.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.810][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:27.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:27.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.814][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:27.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:27.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.819][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:27.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:27.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:27.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:27.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:27.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:27.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:27.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:27.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:27.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:27.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:27.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:27.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:27.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:27.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.854][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:27.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:27.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.858][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:27.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:27.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:27.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:27.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.868][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:27.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:27.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.873][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:27.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:27.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.878][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:27.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:27.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.883][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:27.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:27.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.887][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:27.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:27.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.892][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:27.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:27.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.897][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:27.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:27.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.902][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:27.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:27.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.907][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:27.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:27.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.919][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172529260, (2S,4R)-4-[(5-fluoro-2-pyridyl)oxy]pyrrolidine-2-carboxylic acid, (2S,4R)-4-[(5-fluoro-2-pyridinyl)oxy]-2-pyrrolidinecarboxylic acid, (2S,4R)-4-(5-fluoropyridin-2-yl)oxypyrrolidine-2-carboxylic acid, (2S,4R)-4-(5-fluoranylpyridin-2-yl)oxypyrrolidine-2-carboxylic acid, ...].
biodb.DEBUG[2024-12-21 16:06:27.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:27.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:27.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:27.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:27.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:27.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:27.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:27.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:27.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:27.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:27.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:27.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:27.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:27.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:27.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:27.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:27.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:27.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.957][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:27.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:27.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:27.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:27.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:27.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:27.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:27.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:27.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:27.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:27.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:27.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:27.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:27.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:27.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.992][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:27.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:27.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:27.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:27.997][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:27.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:27.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:28.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:28.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:28.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:28.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:28.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:28.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:28.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:28.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.021][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:28.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:28.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.026][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:28.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:28.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:28.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:28.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:28.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:28.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.059][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:28.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:28.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.064][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:28.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:28.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.069][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:28.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:28.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.074][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:28.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:28.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.079][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:28.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:28.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.084][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:28.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:28.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.089][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:28.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:28.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.094][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:28.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:28.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.099][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:28.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:28.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.104][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:28.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:28.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.109][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:28.110][private$selectFields]
biodb.TRACE[2024-12-21 16:06:28.112][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:28.113][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:28.114][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:28.115][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:28.116][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:28.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.119][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.120][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:28.121][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:28.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.123][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.124][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:28.126][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:28.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.128][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.130][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:28.131][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:28.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.134][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.135][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:28.136][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:28.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.139][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.140][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:28.141][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:28.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.143][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.144][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:28.146][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:28.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.148][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.149][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:28.151][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:28.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.153][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.154][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:28.155][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:28.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.158][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.159][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:28.160][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:28.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.162][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.164][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:28.165][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:28.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.167][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.169][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.170][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.172][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.173][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:28.175][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:28.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.177][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.178][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:28.179][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:28.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.182][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.183][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:28.184][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:28.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.186][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.188][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:28.189][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:28.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.191][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.192][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:28.194][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:28.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.196][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.197][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:28.198][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:28.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.201][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.202][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:28.203][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:28.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.205][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.207][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:28.208][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:28.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.210][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.211][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:28.213][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:28.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.215][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.216][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:28.217][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:28.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.220][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.221][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:28.222][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:28.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.225][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.226][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:28.227][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:28.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.229][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.231][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:28.232][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:28.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.234][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.235][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:28.237][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:28.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.239][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.241][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:28.242][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:28.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.244][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.246][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:28.247][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:28.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.249][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.250][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.252][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.254][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.255][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:28.256][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:28.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.259][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.260][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:28.261][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:28.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.263][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.264][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:28.266][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:28.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.268][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.269][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:28.270][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:28.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.273][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.274][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:28.275][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:28.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.277][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.279][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:28.280][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:28.281][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:28.282][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:28.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.285][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.286][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:28.287][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:28.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.289][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.290][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:28.292][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:28.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.294][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.295][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:28.296][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:28.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.299][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.300][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:28.301][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:28.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.303][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.304][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:28.306][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:28.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.308][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.309][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:28.310][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:28.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.313][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.314][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:28.315][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:28.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.317][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.318][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:28.320][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:28.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.322][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.323][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:28.324][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:28.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.327][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.328][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:28.329][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:28.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.331][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.333][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.334][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.336][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.337][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:28.338][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:28.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.341][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.342][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:28.343][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:28.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.345][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.347][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:28.348][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:28.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.350][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.351][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:28.353][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:28.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.355][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.356][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-21 16:06:28.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:28.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:28.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:28.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:28.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:28.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:28.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:28.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:28.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:28.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:28.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.382][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:28.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:28.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.387][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:28.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:28.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:28.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:28.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:28.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:28.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.401][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:28.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:28.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.406][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:28.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:28.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.411][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:28.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:28.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:28.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:28.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.421][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:28.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:28.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:28.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:28.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:28.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:28.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:28.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:28.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:28.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:28.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.454][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:28.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:28.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.459][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:28.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:28.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.463][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:28.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:28.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:28.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:28.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.473][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:28.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:28.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.478][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:28.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:28.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:28.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:28.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.488][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:28.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:28.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:28.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:28.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.499][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:28.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:28.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.503][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:28.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:28.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.508][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:28.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:28.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:28.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:28.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:28.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:28.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:28.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:28.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.542][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:28.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:28.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.547][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:28.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:28.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.552][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:28.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:28.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:28.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:28.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:28.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:28.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.567][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:28.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:28.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.572][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:28.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:28.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.577][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:28.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:28.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.582][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:28.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:28.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.587][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:28.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:28.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.591][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:28.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:28.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.596][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:28.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:28.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.608][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172524779, ethyl 6-methoxy-5-nitro-pyridine-3-carboxylate, 6-methoxy-5-nitro-3-pyridinecarboxylic acid ethyl ester, ethyl 6-methoxy-5-nitropyridine-3-carboxylate, ethyl 6-methoxy-5-nitro-pyridine-3-carboxylate, ...].
biodb.DEBUG[2024-12-21 16:06:28.610][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:28.611][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-21 16:06:28.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:28.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:28.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:28.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:28.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:28.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:28.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:28.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:28.678][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:28.681][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:06:28.683][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-12-21 16:06:28.684][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:06:28.686][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-12-21 16:06:28.688][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:28.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:28.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:28.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:28.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:28.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:28.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:28.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:28.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:28.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:28.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:28.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:28.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:28.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:28.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:28.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:28.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:28.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:28.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.728][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:28.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:28.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:28.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:28.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:28.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:28.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:28.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:28.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:28.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:28.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:28.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:28.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:28.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:28.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.762][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:28.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:28.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.766][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:28.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:28.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.771][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:28.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:28.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:28.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:28.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:28.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:28.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:28.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:28.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.790][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:28.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:28.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.795][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:28.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:28.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:28.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:28.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:28.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:28.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.819][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:28.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:28.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.824][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:28.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:28.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:28.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:28.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.843][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:28.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:28.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.848][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:28.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:28.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.853][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:28.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:28.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.858][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:28.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:28.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.863][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:28.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:28.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.868][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:28.869][private$selectFields]
biodb.TRACE[2024-12-21 16:06:28.870][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:28.871][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:28.872][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:28.874][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:28.875][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:28.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.877][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.878][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:28.880][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:28.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.882][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.883][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:28.885][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:28.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.887][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.888][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:28.890][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:28.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.892][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.893][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:28.894][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:28.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.897][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.898][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:28.899][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:28.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.901][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.903][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:28.904][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:28.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.906][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.907][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:28.909][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:28.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.911][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.912][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:28.913][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:28.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.916][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.917][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:28.918][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:28.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.920][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.921][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:28.923][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:28.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.925][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.926][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.927][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:28.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.930][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.931][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:28.932][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:28.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.934][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.936][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:28.937][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:28.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.939][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.941][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:28.942][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:28.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.944][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.945][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:28.947][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:28.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.949][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.950][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:28.951][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:28.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.954][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.955][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:28.956][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:28.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.958][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.960][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:28.961][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:28.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.963][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.964][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:28.966][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:28.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.968][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.969][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:28.971][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:28.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.973][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.974][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:28.975][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:28.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.978][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.979][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:28.980][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:28.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.983][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.984][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:28.985][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:28.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.987][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.988][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:28.990][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:28.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.992][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.993][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:28.995][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:28.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:28.997][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:28.998][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:28.999][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:29.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.002][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.003][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:29.004][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:29.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.006][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.008][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:29.009][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:29.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.011][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.012][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:29.014][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:29.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.016][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.017][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:29.018][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:29.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.021][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.022][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:29.023][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:29.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.025][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.027][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:29.028][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:29.029][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:29.030][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:29.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.033][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.034][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:29.035][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:29.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.037][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.038][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:29.040][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:29.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.042][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.043][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:29.044][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:29.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.047][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.048][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:29.049][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:29.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.051][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.053][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:29.054][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:29.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.056][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.057][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:29.059][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:29.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.061][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.062][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:29.063][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:29.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.066][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.067][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:29.068][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:29.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.070][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.072][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:29.073][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:29.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.075][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.076][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:29.078][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:29.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.080][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.081][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:29.082][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:29.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.084][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.086][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:29.087][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:29.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.089][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.091][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:29.092][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:29.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.094][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.095][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:29.097][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:29.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.099][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.100][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:29.101][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:29.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.104][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.105][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-21 16:06:29.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:29.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:29.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:29.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:29.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:29.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:29.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.121][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:29.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:29.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.126][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:29.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:29.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:29.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:29.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:29.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:29.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:29.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:29.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:29.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:29.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.153][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:29.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:29.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:29.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:29.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.163][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:29.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:29.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:29.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:29.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:29.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:29.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.178][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:29.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:29.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:29.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:29.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:29.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:29.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:29.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:29.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.198][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:29.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:29.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.203][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:29.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:29.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.208][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:29.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:29.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.213][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:29.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:29.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:29.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:29.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:29.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:29.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.228][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:29.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:29.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:29.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:29.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:29.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:29.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.257][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:29.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:29.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.262][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:29.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:29.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.267][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:29.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:29.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:29.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:29.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:29.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:29.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:29.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:29.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:29.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:29.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:29.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:29.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:29.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:29.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.302][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:29.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:29.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.307][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:29.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:29.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.312][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:29.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:29.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:29.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:29.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.322][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:29.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:29.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.326][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:29.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:29.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.331][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:29.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:29.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.336][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:29.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:29.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.341][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:29.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:29.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.346][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:29.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:29.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.351][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:29.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:29.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.356][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:29.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:29.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.368][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172431267, octyl methylsulfanylformate, (methylthio)formic acid octyl ester, octyl methylsulfanylformate, octyl methylsulfanylmethanoate, ...].
biodb.DEBUG[2024-12-21 16:06:29.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:29.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:29.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:29.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:29.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:29.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:29.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:29.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:29.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:29.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:29.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:29.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:29.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:29.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.398][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:29.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:29.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:29.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:29.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.407][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:29.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:29.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:29.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:29.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:29.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:29.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:29.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:29.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:29.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:29.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:29.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:29.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:29.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:29.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.441][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:29.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:29.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.446][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:29.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:29.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:29.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:29.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:29.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:29.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.460][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:29.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:29.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:29.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:29.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.470][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:29.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:29.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.475][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:29.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:29.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:29.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:29.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:29.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:29.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:29.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:29.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:29.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:29.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.499][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:29.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:29.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.504][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:29.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:29.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:29.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:29.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:29.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:29.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.518][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:29.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:29.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.523][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:29.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:29.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.528][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:29.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:29.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.533][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:29.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:29.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.537][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:29.538][private$selectFields]
biodb.TRACE[2024-12-21 16:06:29.540][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:29.541][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:29.542][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:29.543][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:29.544][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:29.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.547][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.548][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:29.549][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:29.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.551][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.553][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:29.554][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:29.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.556][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.557][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:29.559][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:29.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.561][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.562][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:29.563][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:29.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.566][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.567][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:29.568][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:29.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.570][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.571][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:29.573][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:29.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.575][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.576][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:29.577][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:29.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.580][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.581][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:29.582][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:29.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.584][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.586][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:29.587][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:29.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.589][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.590][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:29.592][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:29.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.594][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.595][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:29.596][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:29.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.599][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.600][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:29.601][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:29.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.603][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.604][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:29.606][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:29.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.608][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.609][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:29.610][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:29.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.613][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.614][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:29.615][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:29.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.617][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.619][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:29.620][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:29.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.622][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.623][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:29.624][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:29.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.627][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.636][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:29.637][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:29.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.640][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.641][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:29.643][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:29.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.645][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.646][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:29.648][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:29.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.650][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.651][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:29.652][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:29.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.655][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.656][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:29.657][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:29.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.660][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.661][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:29.662][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:29.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.665][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.666][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:29.667][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:29.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.669][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.671][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:29.672][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:29.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.674][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.676][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:29.677][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:29.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.679][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.680][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:29.682][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:29.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.684][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.685][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:29.687][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:29.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.689][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.690][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:29.692][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:29.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.694][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.695][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:29.696][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:29.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.699][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.700][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:29.701][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:29.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.703][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.705][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:29.706][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:29.707][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:29.708][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:29.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.711][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.712][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:29.713][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:29.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.716][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.717][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:29.718][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:29.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.720][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.722][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:29.723][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:29.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.725][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.726][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:29.728][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:29.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.730][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.731][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:29.732][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:29.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.735][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.736][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:29.737][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:29.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.740][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.741][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:29.742][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:29.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.744][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.746][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:29.747][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:29.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.749][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.750][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:29.752][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:29.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.754][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.755][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:29.756][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:29.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.759][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.760][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:29.761][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:29.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.763][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.765][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:29.766][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:29.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.768][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.769][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:29.771][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:29.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.773][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.774][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:29.775][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:29.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.778][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.779][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:29.780][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:29.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.782][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.784][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-21 16:06:29.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:29.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:29.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:29.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:29.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:29.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:29.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:29.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:29.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:29.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:29.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:29.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:29.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:29.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:29.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:29.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:29.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:29.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:29.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:29.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:29.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:29.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:29.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.839][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:29.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:29.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:29.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:29.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:29.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:29.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:29.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:29.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:29.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:29.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:29.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:29.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.869][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:29.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:29.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.874][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:29.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:29.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.879][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:29.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:29.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.884][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:29.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:29.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:29.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:29.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:29.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:29.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:29.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:29.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:29.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:29.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.908][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:29.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:29.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.913][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:29.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:29.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.918][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:29.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:29.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.923][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:29.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:29.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.928][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:29.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:29.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:29.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:29.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:29.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:29.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:29.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:29.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:29.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:29.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:29.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:29.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:29.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:29.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.962][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:29.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:29.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.967][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:29.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:29.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.972][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:29.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:29.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.977][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:29.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:29.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:29.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:29.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:29.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:29.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.991][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:29.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:29.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:29.996][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:29.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:29.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:29.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.001][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:30.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:30.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.006][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:30.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:30.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.010][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:30.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:30.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.015][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:30.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:30.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.036][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172417440, 2-[4-(isocyanomethyl)phenoxy]-N,N-dimethyl-ethanamine, 2-[4-(isocyanomethyl)phenoxy]-N,N-dimethylethanamine, 2-[4-(isocyanomethyl)phenoxy]-N,N-dimethylethanamine, 2-[4-(isocyanomethyl)phenoxy]-N,N-dimethyl-ethanamine, ...].
biodb.DEBUG[2024-12-21 16:06:30.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:30.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:30.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:30.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:30.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:30.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:30.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:30.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:30.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:30.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:30.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:30.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:30.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:30.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:30.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:30.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:30.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:30.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:30.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:30.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:30.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:30.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:30.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:30.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.092][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:30.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:30.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:30.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:30.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:30.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:30.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.107][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:30.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:30.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.112][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:30.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:30.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.117][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:30.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:30.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.121][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:30.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:30.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:30.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:30.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:30.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:30.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.137][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:30.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:30.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.142][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:30.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:30.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.147][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:30.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:30.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:30.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:30.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:30.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:30.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:30.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:30.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:30.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:30.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.171][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:30.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:30.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.176][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:30.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:30.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.181][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:30.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:30.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.186][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:30.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:30.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.191][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:30.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:30.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.196][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:30.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:30.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.201][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:30.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:30.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.205][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:30.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:30.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.210][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:30.211][private$selectFields]
biodb.TRACE[2024-12-21 16:06:30.213][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:30.214][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:30.215][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:30.216][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:30.217][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:30.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.220][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.221][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:30.222][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:30.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.225][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.226][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:30.227][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:30.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.229][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.231][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:30.232][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:30.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.234][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.235][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:30.237][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:30.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.239][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.240][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:30.241][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:30.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.244][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.245][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:30.246][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:30.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.248][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.249][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:30.251][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:30.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.253][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.254][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:30.255][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:30.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.258][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.259][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:30.260][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:30.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.262][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.264][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:30.265][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:30.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.267][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.268][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:30.270][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:30.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.272][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.273][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:30.274][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:30.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.277][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.278][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:30.279][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:30.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.281][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.282][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:30.284][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:30.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.286][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.287][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:30.288][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:30.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.291][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.292][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:30.293][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:30.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.295][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.297][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:30.298][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:30.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.300][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.301][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:30.303][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:30.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.305][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.306][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:30.307][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:30.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.310][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.311][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:30.312][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:30.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.314][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.315][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:30.317][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:30.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.319][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.320][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:30.321][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:30.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.324][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.325][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:30.326][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:30.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.328][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.330][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:30.331][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:30.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.333][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.334][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:30.335][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:30.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.338][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.339][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:30.340][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:30.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.342][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.344][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:30.345][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:30.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.347][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.348][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:30.350][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:30.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.352][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.353][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:30.354][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:30.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.357][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.358][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:30.359][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:30.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.361][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.362][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:30.364][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:30.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.366][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.367][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:30.368][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:30.370][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:30.371][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:30.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.373][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.374][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:30.376][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:30.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.378][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.379][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:30.380][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:30.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.383][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.384][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:30.385][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:30.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.387][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.389][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:30.390][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:30.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.392][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.393][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:30.395][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:30.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.397][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.398][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:30.399][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:30.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.402][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.403][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:30.404][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:30.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.406][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.408][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:30.409][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:30.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.411][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.412][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:30.414][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:30.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.416][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.417][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:30.419][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:30.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.429][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.430][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:30.432][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:30.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.435][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.436][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:30.437][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:30.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.440][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.441][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:30.442][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:30.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.445][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.446][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:30.447][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:30.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.449][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.451][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:30.452][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:30.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.455][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.456][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-21 16:06:30.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:30.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:30.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:30.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:30.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:30.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:30.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:30.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:30.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.478][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:30.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:30.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:30.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:30.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:30.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:30.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:30.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:30.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:30.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:30.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.502][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:30.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:30.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:30.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:30.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:30.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:30.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:30.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:30.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:30.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:30.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:30.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:30.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:30.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:30.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:30.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:30.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:30.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:30.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.547][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:30.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:30.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.551][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:30.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:30.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.556][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:30.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:30.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.561][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:30.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:30.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:30.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:30.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.571][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:30.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:30.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.576][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:30.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:30.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:30.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:30.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:30.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:30.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.591][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:30.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:30.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.596][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:30.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:30.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.600][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:30.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:30.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:30.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:30.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:30.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:30.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:30.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:30.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:30.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:30.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:30.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:30.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:30.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:30.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.635][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:30.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:30.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.640][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:30.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:30.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.644][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:30.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:30.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.649][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:30.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:30.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.654][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:30.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:30.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.659][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:30.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:30.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.664][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:30.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:30.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.669][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:30.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:30.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.674][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:30.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:30.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.679][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:30.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:30.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.683][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:30.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:30.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.688][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:30.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:30.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.700][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172414169, 3-(2-methoxyphenyl)-2,2-dimethyl-cyclopropanecarbaldehyde, 3-(2-methoxyphenyl)-2,2-dimethyl-1-cyclopropanecarboxaldehyde, 3-(2-methoxyphenyl)-2,2-dimethylcyclopropane-1-carbaldehyde, 3-(2-methoxyphenyl)-2,2-dimethyl-cyclopropane-1-carbaldehyde, ...].
biodb.DEBUG[2024-12-21 16:06:30.701][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:30.702][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:30.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:30.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:30.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:30.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:30.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:30.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:30.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:30.725][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:30.728][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:06:30.730][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-12-21 16:06:30.732][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:06:30.734][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-12-21 16:06:30.736][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:30.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:30.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:30.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:30.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:30.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:30.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:30.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:30.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:30.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:30.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:30.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:30.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:30.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:30.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.766][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:30.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:30.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.771][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:30.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:30.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.775][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:30.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:30.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.780][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:30.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:30.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.785][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:30.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:30.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.790][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:30.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:30.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:30.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:30.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:30.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:30.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:30.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:30.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.809][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:30.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:30.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.814][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:30.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:30.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:30.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:30.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:30.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:30.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:30.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:30.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:30.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:30.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.848][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:30.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:30.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.853][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:30.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:30.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:30.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:30.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:30.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:30.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:30.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:30.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:30.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:30.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.878][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:30.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:30.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.883][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:30.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:30.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.888][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:30.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:30.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.892][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:30.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:30.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.897][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:30.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:30.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.902][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:30.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:30.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.907][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:30.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:30.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.912][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:30.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:30.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.917][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:30.918][private$selectFields]
biodb.TRACE[2024-12-21 16:06:30.919][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:30.920][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:30.921][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:30.922][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:30.924][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:30.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.926][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.927][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:30.929][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:30.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.931][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.932][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:30.933][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:30.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.936][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.937][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:30.938][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:30.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.940][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.942][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:30.943][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:30.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.945][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.946][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:30.948][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:30.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.950][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.951][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:30.952][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:30.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.955][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.956][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:30.957][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:30.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.959][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.960][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:30.962][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:30.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.964][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.965][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:30.967][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:30.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.969][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.970][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:30.971][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:30.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.974][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.975][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:30.976][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:30.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.978][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.979][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:30.981][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:30.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.983][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.984][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:30.985][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:30.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.988][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.989][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:30.990][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:30.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.993][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.994][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:30.995][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:30.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:30.997][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:30.999][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:31.000][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:31.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.002][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.003][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:31.005][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:31.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.007][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.008][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:31.009][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:31.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.012][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.013][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:31.014][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:31.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.017][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.018][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:31.019][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:31.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.021][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.022][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:31.024][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:31.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.026][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.027][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:31.029][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:31.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.031][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.032][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:31.033][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:31.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.036][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.037][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:31.038][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:31.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.041][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.042][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:31.044][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:31.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.046][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.047][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:31.048][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:31.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.051][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.052][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:31.053][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:31.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.055][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.057][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:31.058][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:31.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.060][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.061][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:31.062][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:31.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.065][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.066][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:31.067][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:31.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.069][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.071][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:31.072][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:31.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.074][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.075][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:31.077][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:31.078][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:31.079][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:31.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.081][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.082][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:31.084][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:31.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.086][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.087][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:31.088][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:31.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.091][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.092][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:31.093][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:31.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.095][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.096][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:31.098][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:31.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.100][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.101][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:31.102][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:31.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.105][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.106][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:31.107][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:31.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.109][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.110][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:31.112][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:31.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.114][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.115][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:31.116][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:31.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.119][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.120][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:31.121][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:31.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.123][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.124][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:31.126][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:31.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.128][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.129][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:31.131][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:31.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.133][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.135][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:31.136][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:31.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.138][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.139][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:31.140][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:31.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.143][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.144][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:31.145][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:31.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.147][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.149][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:31.150][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:31.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.152][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.153][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-21 16:06:31.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:31.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:31.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:31.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:31.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:31.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:31.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:31.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:31.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:31.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:31.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:31.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:31.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.184][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:31.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:31.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:31.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:31.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:31.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:31.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:31.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:31.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:31.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:31.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:31.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:31.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.221][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:31.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:31.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:31.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:31.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:31.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:31.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.236][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:31.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:31.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:31.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:31.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:31.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:31.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.251][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:31.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:31.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.256][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:31.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:31.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.261][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:31.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:31.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:31.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:31.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:31.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:31.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.276][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:31.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:31.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.280][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:31.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:31.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.285][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:31.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:31.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.290][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:31.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:31.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.295][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:31.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:31.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.300][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:31.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:31.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.305][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:31.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:31.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:31.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:31.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:31.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:31.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:31.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:31.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:31.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:31.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:31.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:31.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:31.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:31.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.339][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:31.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:31.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.344][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:31.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:31.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.349][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:31.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:31.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.354][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:31.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:31.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.359][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:31.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:31.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.364][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:31.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:31.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.369][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:31.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:31.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.373][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:31.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:31.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.378][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:31.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:31.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.383][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:31.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:31.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.388][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:31.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:31.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.393][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:31.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:31.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.405][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172634706, 3-(3-chloropropyl)-6-fluoro-1-methyl-indazole, 3-(3-chloropropyl)-6-fluoro-1-methylindazole, 3-(3-chloropropyl)-6-fluoro-1-methylindazole, 3-(3-chloranylpropyl)-6-fluoranyl-1-methyl-indazole, ...].
biodb.DEBUG[2024-12-21 16:06:31.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:31.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:31.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:31.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:31.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:31.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:31.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:31.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:31.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:31.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:31.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:31.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:31.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:31.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:31.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:31.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:31.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:31.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:31.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:31.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.449][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:31.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:31.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:31.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:31.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:31.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:31.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.463][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:31.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:31.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.468][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:31.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:31.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:31.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:31.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.478][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:31.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:31.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.483][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:31.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:31.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:31.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:31.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:31.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:31.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:31.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:31.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:31.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:31.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.507][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:31.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:31.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.511][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:31.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:31.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:31.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:31.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:31.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:31.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:31.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:31.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:31.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:31.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.535][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:31.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:31.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.540][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:31.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:31.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.545][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:31.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:31.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.550][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:31.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:31.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.554][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:31.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:31.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.559][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:31.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:31.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.564][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:31.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:31.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.569][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:31.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:31.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.574][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:31.575][private$selectFields]
biodb.TRACE[2024-12-21 16:06:31.576][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:31.577][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:31.578][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:31.579][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:31.581][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:31.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.583][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.584][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:31.585][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:31.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.588][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.589][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:31.590][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:31.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.592][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.593][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:31.595][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:31.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.597][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.598][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:31.599][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:31.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.602][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.610][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:31.612][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:31.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.615][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.616][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:31.617][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:31.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.620][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.621][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:31.622][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:31.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.624][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.626][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:31.627][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:31.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.629][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.630][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:31.632][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:31.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.634][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.635][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:31.636][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:31.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.639][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.640][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:31.641][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:31.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.644][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.645][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:31.646][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:31.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.648][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.650][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:31.651][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:31.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.653][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.654][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:31.656][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:31.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.658][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.659][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:31.661][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:31.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.663][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.664][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:31.666][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:31.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.668][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.669][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:31.670][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:31.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.672][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.674][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:31.675][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:31.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.677][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.678][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:31.680][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:31.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.682][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.683][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:31.684][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:31.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.687][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.688][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:31.689][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:31.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.691][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.692][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:31.694][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:31.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.696][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.697][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:31.698][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:31.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.701][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.702][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:31.703][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:31.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.705][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.707][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:31.708][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:31.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.710][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.711][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:31.713][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:31.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.715][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.716][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:31.718][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:31.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.720][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.721][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:31.722][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:31.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.724][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.726][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:31.727][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:31.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.729][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.730][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:31.732][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:31.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.734][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.735][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:31.736][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:31.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.739][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.740][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:31.741][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:31.742][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:31.744][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:31.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.746][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.747][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:31.748][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:31.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.751][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.752][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:31.753][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:31.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.755][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.757][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:31.758][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:31.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.760][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.761][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:31.763][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:31.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.765][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.766][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:31.767][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:31.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.770][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.771][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:31.772][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:31.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.774][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.776][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:31.777][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:31.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.779][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.780][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:31.782][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:31.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.784][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.785][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:31.786][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:31.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.789][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.790][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:31.791][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:31.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.793][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.794][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:31.796][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:31.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.798][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.799][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:31.800][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:31.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.803][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.804][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:31.805][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:31.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.807][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.809][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:31.810][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:31.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.812][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.813][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:31.814][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:31.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.817][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.818][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-21 16:06:31.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:31.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:31.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:31.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:31.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:31.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:31.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:31.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:31.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.839][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:31.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:31.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:31.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:31.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:31.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:31.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:31.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:31.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:31.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:31.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:31.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:31.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:31.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:31.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:31.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:31.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:31.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:31.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:31.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:31.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.887][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:31.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:31.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:31.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:31.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:31.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:31.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:31.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:31.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.906][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:31.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:31.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.911][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:31.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:31.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.916][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:31.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:31.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:31.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:31.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:31.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:31.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:31.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:31.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:31.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:31.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:31.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:31.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:31.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:31.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.950][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:31.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:31.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.955][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:31.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:31.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.960][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:31.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:31.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.964][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:31.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:31.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:31.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:31.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:31.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:31.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:31.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:31.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.984][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:31.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:31.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:31.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:31.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:31.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:31.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.001][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:32.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:32.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.007][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:32.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:32.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.012][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:32.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:32.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:32.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:32.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.022][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:32.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:32.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.027][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:32.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:32.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.032][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:32.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:32.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:32.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:32.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.042][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:32.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:32.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.047][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:32.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:32.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.052][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:32.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:32.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.057][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:32.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:32.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.069][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172629519, (Z)-1-(3-chloro-5-methyl-pyrazin-2-yl)-1-hydroxy-pent-1-en-3-one, (Z)-1-(3-chloro-5-methyl-2-pyrazinyl)-1-hydroxy-1-penten-3-one, (Z)-1-(3-chloro-5-methylpyrazin-2-yl)-1-hydroxypent-1-en-3-one, (Z)-1-(3-chloranyl-5-methyl-pyrazin-2-yl)-1-oxidanyl-pent-1-en-3-one, ...].
biodb.DEBUG[2024-12-21 16:06:32.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:32.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:32.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:32.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:32.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:32.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:32.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:32.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:32.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:32.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:32.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:32.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:32.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:32.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.099][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:32.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:32.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:32.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:32.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:32.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:32.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.113][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:32.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:32.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.118][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:32.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:32.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:32.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:32.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.128][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:32.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:32.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:32.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:32.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:32.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:32.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.143][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:32.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:32.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.148][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:32.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:32.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:32.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:32.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.157][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:32.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:32.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:32.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:32.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:32.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:32.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.171][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:32.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:32.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.176][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:32.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:32.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:32.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:32.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:32.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:32.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:32.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:32.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.195][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:32.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:32.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.200][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:32.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:32.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.205][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:32.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:32.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.210][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:32.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:32.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.214][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:32.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:32.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.219][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:32.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:32.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.224][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:32.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:32.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.229][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:32.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:32.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.233][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:32.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:32.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.238][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:32.239][private$selectFields]
biodb.TRACE[2024-12-21 16:06:32.240][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:32.242][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:32.243][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:32.244][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:32.245][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:32.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.247][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.249][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:32.250][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:32.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.252][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.253][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:32.254][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:32.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.257][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.258][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:32.259][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:32.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.261][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.263][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:32.264][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:32.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.266][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.267][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:32.269][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:32.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.271][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.272][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:32.273][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:32.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.275][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.277][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:32.278][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:32.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.280][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.281][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:32.283][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:32.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.285][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.286][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:32.287][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:32.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.289][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.291][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:32.292][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:32.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.294][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.295][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:32.297][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:32.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.299][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.300][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:32.301][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:32.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.303][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.305][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:32.306][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:32.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.308][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.309][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:32.310][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:32.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.313][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.314][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:32.315][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:32.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.317][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.319][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:32.320][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:32.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.322][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.323][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:32.324][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:32.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.327][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.328][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:32.329][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:32.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.331][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.333][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:32.334][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:32.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.336][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.337][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:32.338][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:32.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.341][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.342][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:32.343][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:32.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.345][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.347][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:32.348][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:32.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.350][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.351][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:32.352][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:32.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.355][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.356][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:32.357][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:32.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.359][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.360][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:32.362][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:32.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.364][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.365][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:32.366][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:32.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.369][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.370][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:32.371][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:32.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.373][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.374][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:32.376][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:32.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.378][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.379][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:32.380][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:32.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.390][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.392][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:32.393][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:32.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.396][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.397][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:32.398][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:32.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.400][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.402][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-12-21 16:06:32.403][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-12-21 16:06:32.404][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:32.405][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:32.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.408][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.409][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:32.410][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:32.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.413][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.415][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:32.416][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:32.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.418][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.419][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:32.421][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:32.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.423][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.424][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:32.426][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:32.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.428][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.429][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:32.430][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:32.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.433][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.434][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:32.435][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:32.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.438][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.439][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:32.440][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:32.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.443][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.444][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:32.445][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:32.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.447][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.448][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:32.450][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:32.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.452][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.453][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:32.454][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:32.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.457][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.458][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:32.459][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:32.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.461][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.462][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:32.464][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:32.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.466][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.467][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:32.468][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:32.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.471][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.472][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:32.473][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:32.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.475][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.477][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-21 16:06:32.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:32.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:32.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:32.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:32.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:32.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:32.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:32.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:32.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:32.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:32.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.503][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:32.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:32.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:32.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:32.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:32.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:32.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:32.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:32.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:32.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:32.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:32.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:32.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:32.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:32.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:32.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:32.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:32.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:32.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:32.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:32.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:32.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:32.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:32.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:32.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.561][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:32.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:32.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.566][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:32.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:32.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.571][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:32.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:32.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.576][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:32.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:32.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:32.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:32.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:32.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:32.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:32.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:32.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.595][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:32.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:32.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:32.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:32.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:32.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:32.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:32.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:32.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:32.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:32.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:32.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:32.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:32.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:32.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:32.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:32.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:32.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:32.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.638][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:32.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:32.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.643][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:32.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:32.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.648][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:32.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:32.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.653][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:32.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:32.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.657][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:32.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:32.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.662][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:32.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:32.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.667][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:32.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:32.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.672][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:32.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:32.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.677][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:32.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:32.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.682][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:32.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:32.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.686][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:32.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:32.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.691][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:32.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:32.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.702][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172621093, 1-isopropyl-3-methyl-piperazin-4-ide;rubidium(1+), 3-methyl-1-propan-2-ylpiperazin-4-ide;rubidium(1+), 3-methyl-1-propan-2-ylpiperazin-4-ide;rubidium(1+), 3-methyl-1-propan-2-yl-piperazin-4-ide;rubidium(1+), ...].
biodb.DEBUG[2024-12-21 16:06:32.704][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:32.705][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:32.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:32.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:32.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:32.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:32.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:32.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:32.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:32.732][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:32.736][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:06:32.737][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-12-21 16:06:32.739][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:06:32.741][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-12-21 16:06:32.743][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:32.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:32.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:32.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:32.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:32.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:32.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:32.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:32.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:32.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:32.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:32.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:32.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:32.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:32.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.781][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:32.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:32.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:32.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:32.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.792][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:32.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:32.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.797][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:32.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:32.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.802][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:32.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:32.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:32.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:32.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:32.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:32.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.816][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:32.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:32.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:32.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:32.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.826][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:32.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:32.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.831][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:32.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:32.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:32.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:32.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.841][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:32.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:32.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:32.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:32.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:32.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:32.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.855][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:32.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:32.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.860][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:32.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:32.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:32.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:32.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:32.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:32.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:32.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:32.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:32.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:32.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.884][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:32.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:32.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.889][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:32.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:32.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.894][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:32.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:32.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.899][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:32.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:32.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.904][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:32.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:32.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.909][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:32.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:32.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.913][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:32.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:32.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.918][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:32.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:32.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.923][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:32.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:32.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.928][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:32.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:32.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.932][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:32.934][private$selectFields]
biodb.TRACE[2024-12-21 16:06:32.935][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:32.936][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:32.937][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:32.938][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:32.940][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:32.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.942][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.943][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:32.944][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:32.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.947][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.948][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:32.949][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:32.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.951][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.952][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:32.954][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:32.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.956][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.957][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:32.958][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:32.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.961][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.962][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:32.963][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:32.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.966][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.967][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:32.968][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:32.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.970][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.971][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:32.973][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:32.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.975][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.976][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:32.977][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:32.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.980][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.981][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:32.982][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:32.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.984][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.985][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:32.987][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:32.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.989][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.990][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:32.991][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:32.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.994][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.995][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:32.996][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:32.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:32.998][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:32.999][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:33.001][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:33.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.003][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.004][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:33.005][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:33.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.008][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.009][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:33.010][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:33.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.012][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.013][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:33.015][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:33.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.017][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.018][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:33.019][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:33.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.022][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.023][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:33.024][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:33.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.026][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.027][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:33.029][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:33.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.031][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.032][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:33.033][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:33.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.036][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.037][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:33.038][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:33.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.040][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.041][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:33.043][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:33.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.045][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.046][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:33.047][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:33.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.050][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.051][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:33.052][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:33.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.054][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.055][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:33.057][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:33.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.059][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.060][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:33.061][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:33.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.064][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.065][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:33.066][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:33.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.068][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.070][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:33.071][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:33.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.073][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.074][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:33.075][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:33.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.078][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.079][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:33.080][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:33.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.082][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.084][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:33.085][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:33.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.087][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.088][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:33.089][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:33.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.092][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.093][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:33.094][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:33.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.096][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.098][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:33.099][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:33.100][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:33.101][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:33.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.104][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.105][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:33.106][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:33.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.108][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.109][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:33.111][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:33.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.113][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.114][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:33.115][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:33.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.118][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.119][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:33.120][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:33.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.122][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.123][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:33.125][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:33.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.127][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.128][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:33.129][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:33.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.132][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.134][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:33.135][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:33.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.137][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.138][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:33.140][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:33.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.142][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.143][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:33.144][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:33.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.147][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.148][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:33.149][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:33.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.151][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.152][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:33.154][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:33.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.156][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.157][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:33.158][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:33.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.161][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.169][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:33.171][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:33.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.174][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.175][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:33.177][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:33.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.179][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.180][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:33.182][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:33.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.184][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.185][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-21 16:06:33.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:33.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:33.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:33.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:33.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:33.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:33.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:33.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:33.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.207][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:33.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:33.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:33.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:33.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:33.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:33.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:33.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:33.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:33.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:33.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.232][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:33.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:33.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.236][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:33.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:33.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:33.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:33.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:33.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:33.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.251][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:33.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:33.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.256][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:33.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:33.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.261][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:33.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:33.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.266][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:33.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:33.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.271][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:33.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:33.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.276][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:33.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:33.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.281][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:33.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:33.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.285][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:33.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:33.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.290][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:33.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:33.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:33.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:33.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:33.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:33.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.305][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:33.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:33.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:33.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:33.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:33.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:33.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.320][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:33.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:33.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.324][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:33.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:33.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.329][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:33.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:33.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:33.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:33.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:33.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:33.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:33.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:33.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:33.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:33.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:33.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:33.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:33.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:33.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.363][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:33.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:33.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.368][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:33.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:33.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.373][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:33.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:33.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.378][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:33.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:33.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:33.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:33.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.387][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:33.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:33.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.392][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:33.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:33.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.397][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:33.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:33.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.402][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:33.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:33.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.407][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:33.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:33.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.411][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:33.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:33.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.416][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:33.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:33.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.428][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172431267, octyl methylsulfanylformate, (methylthio)formic acid octyl ester, octyl methylsulfanylformate, octyl methylsulfanylmethanoate, ...].
biodb.DEBUG[2024-12-21 16:06:33.429][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:33.430][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:33.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:33.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:33.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:33.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:33.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:33.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:33.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:33.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:33.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:33.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:33.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:33.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:33.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:33.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:33.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:33.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.467][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:33.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:33.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:33.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:33.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.477][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:33.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:33.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:33.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:33.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.486][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:33.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:33.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.491][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:33.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:33.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.496][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:33.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:33.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.501][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:33.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:33.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.505][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:33.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:33.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.510][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:33.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:33.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:33.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:33.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:33.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:33.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:33.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:33.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.529][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:33.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:33.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.534][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:33.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:33.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:33.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:33.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:33.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:33.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:33.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:33.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:33.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:33.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.566][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:33.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:33.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.571][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:33.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:33.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:33.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:33.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.581][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:33.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:33.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.586][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:33.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:33.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.591][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:33.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:33.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.596][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:33.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:33.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.601][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:33.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:33.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.605][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:33.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:33.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.610][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:33.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:33.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.615][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:33.616][private$selectFields]
biodb.TRACE[2024-12-21 16:06:33.618][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:33.619][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:33.620][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:33.621][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:33.622][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:33.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.625][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.626][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:33.627][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:33.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.629][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.631][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:33.632][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:33.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.634][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.635][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:33.636][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:33.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.639][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.640][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:33.641][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:33.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.643][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.645][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:33.646][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:33.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.648][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.649][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:33.651][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:33.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.653][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.654][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:33.655][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:33.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.658][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.659][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:33.660][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:33.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.662][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.664][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:33.665][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:33.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.667][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.668][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:33.670][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:33.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.672][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.673][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:33.674][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:33.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.676][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.678][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:33.679][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:33.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.681][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.682][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:33.684][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:33.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.686][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.687][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:33.688][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:33.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.691][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.692][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:33.693][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:33.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.695][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.697][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:33.698][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:33.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.700][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.701][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:33.703][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:33.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.705][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.706][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:33.707][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:33.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.709][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.711][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:33.712][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:33.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.714][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.715][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:33.717][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:33.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.719][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.720][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:33.721][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:33.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.724][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.725][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:33.726][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:33.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.728][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.730][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:33.731][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:33.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.733][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.734][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:33.736][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:33.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.738][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.739][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:33.740][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:33.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.743][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.744][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:33.745][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:33.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.747][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.748][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:33.750][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:33.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.752][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.753][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:33.754][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:33.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.757][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.758][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:33.759][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:33.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.761][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.762][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:33.764][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:33.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.766][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.767][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:33.768][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:33.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.771][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.772][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:33.786][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:33.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.789][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.790][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:33.792][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:33.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.794][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.795][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:33.796][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:33.798][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:33.799][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:33.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.801][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.802][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:33.804][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:33.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.806][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.807][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:33.808][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:33.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.811][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.812][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:33.813][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:33.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.815][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.816][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:33.818][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:33.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.820][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.821][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:33.822][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:33.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.825][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.826][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:33.827][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:33.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.829][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.831][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:33.832][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:33.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.834][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.835][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:33.837][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:33.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.839][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.840][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:33.841][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:33.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.844][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.845][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:33.846][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:33.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.848][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.850][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:33.851][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:33.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.853][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.854][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:33.856][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:33.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.858][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.859][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:33.860][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:33.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.863][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.864][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:33.865][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:33.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.867][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.868][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:33.870][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:33.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.872][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.873][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-21 16:06:33.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:33.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:33.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:33.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:33.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:33.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:33.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:33.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:33.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:33.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:33.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.899][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:33.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:33.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:33.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:33.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:33.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:33.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:33.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:33.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:33.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:33.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:33.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:33.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.928][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:33.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:33.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:33.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:33.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.938][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:33.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:33.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.942][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:33.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:33.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.947][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:33.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:33.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:33.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:33.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.965][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:33.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:33.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.971][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:33.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:33.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.976][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:33.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:33.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.980][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:33.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:33.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:33.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:33.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:33.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:33.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:33.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:33.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:33.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:33.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:34.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:34.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:34.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:34.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:34.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:34.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.016][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:34.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:34.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.021][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:34.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:34.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.025][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:34.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:34.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:34.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:34.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:34.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:34.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:34.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:34.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:34.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:34.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:34.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:34.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:34.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:34.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.060][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:34.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:34.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.065][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:34.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:34.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.070][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:34.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:34.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.075][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:34.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:34.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.080][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:34.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:34.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.085][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:34.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:34.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.090][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:34.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:34.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.094][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:34.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:34.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.099][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:34.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:34.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.104][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:34.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:34.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.109][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:34.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:34.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.114][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:34.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:34.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.126][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172417440, 2-[4-(isocyanomethyl)phenoxy]-N,N-dimethyl-ethanamine, 2-[4-(isocyanomethyl)phenoxy]-N,N-dimethylethanamine, 2-[4-(isocyanomethyl)phenoxy]-N,N-dimethylethanamine, 2-[4-(isocyanomethyl)phenoxy]-N,N-dimethyl-ethanamine, ...].
biodb.DEBUG[2024-12-21 16:06:34.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:34.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:34.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:34.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:34.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:34.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:34.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:34.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:34.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:34.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:34.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:34.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:34.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:34.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:34.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:34.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:34.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:34.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:34.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:34.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:34.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:34.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:34.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:34.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:34.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:34.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:34.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:34.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.191][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:34.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:34.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:34.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:34.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.200][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:34.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:34.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.205][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:34.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:34.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.210][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:34.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:34.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:34.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:34.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:34.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:34.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:34.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:34.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.229][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:34.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:34.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.234][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:34.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:34.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:34.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:34.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:34.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:34.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:34.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:34.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:34.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:34.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.258][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:34.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:34.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.262][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:34.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:34.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.267][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:34.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:34.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.272][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:34.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:34.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.277][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:34.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:34.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.282][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:34.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:34.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.286][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:34.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:34.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.291][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:34.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:34.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.296][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:34.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:34.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.301][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:34.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:34.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.305][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:34.307][private$selectFields]
biodb.TRACE[2024-12-21 16:06:34.308][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:34.309][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:34.310][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:34.311][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:34.313][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:34.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.315][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.316][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:34.317][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:34.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.320][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.321][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:34.322][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:34.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.324][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.325][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:34.327][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:34.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.329][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.330][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:34.331][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:34.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.334][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.335][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:34.336][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:34.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.338][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.340][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:34.341][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:34.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.343][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.344][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:34.346][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:34.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.356][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.357][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:34.359][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:34.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.361][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.363][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:34.364][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:34.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.366][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.368][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:34.369][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:34.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.371][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.372][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:34.374][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:34.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.376][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.377][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:34.379][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:34.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.381][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.382][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:34.383][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:34.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.386][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.387][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:34.388][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:34.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.391][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.392][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:34.393][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:34.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.396][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.397][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:34.398][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:34.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.400][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.402][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:34.403][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:34.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.405][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.407][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:34.408][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:34.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.410][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.412][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:34.413][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:34.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.415][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.416][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:34.418][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:34.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.420][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.421][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:34.422][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:34.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.425][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.426][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:34.427][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:34.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.429][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.431][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:34.432][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:34.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.434][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.435][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:34.437][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:34.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.439][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.440][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:34.441][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:34.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.444][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.445][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:34.446][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:34.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.448][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.450][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:34.451][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:34.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.453][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.454][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:34.456][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:34.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.458][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.459][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:34.461][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:34.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.463][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.464][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:34.465][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:34.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.468][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.469][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:34.470][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:34.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.472][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.474][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:34.475][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:34.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.477][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.478][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:34.480][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:34.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.482][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.483][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:34.484][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:34.486][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:34.487][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:34.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.489][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.490][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:34.492][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:34.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.494][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.495][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:34.496][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:34.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.499][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.500][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:34.501][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:34.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.503][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.504][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:34.506][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:34.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.508][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.509][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:34.510][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:34.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.513][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.514][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:34.515][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:34.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.518][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.519][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:34.520][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:34.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.522][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.523][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:34.525][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:34.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.527][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.528][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:34.529][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:34.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.532][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.533][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:34.534][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:34.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.537][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.538][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:34.539][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:34.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.541][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.543][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:34.544][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:34.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.546][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.547][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:34.549][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:34.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.551][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.552][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:34.553][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:34.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.556][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.557][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:34.558][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:34.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.560][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.562][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-21 16:06:34.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:34.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:34.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:34.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:34.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:34.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:34.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:34.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:34.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.582][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:34.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:34.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.587][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:34.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:34.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.592][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:34.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:34.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:34.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:34.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:34.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:34.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:34.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:34.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:34.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:34.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.616][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:34.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:34.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:34.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:34.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:34.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:34.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.631][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:34.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:34.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:34.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:34.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.640][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:34.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:34.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.645][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:34.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:34.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.650][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:34.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:34.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.655][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:34.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:34.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.660][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:34.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:34.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.665][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:34.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:34.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:34.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:34.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:34.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:34.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.679][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:34.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:34.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.684][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:34.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:34.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.689][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:34.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:34.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.694][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:34.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:34.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.698][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:34.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:34.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.703][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:34.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:34.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:34.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:34.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:34.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:34.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:34.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:34.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:34.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:34.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:34.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:34.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:34.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:34.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.737][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:34.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:34.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.750][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:34.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:34.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.756][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:34.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:34.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.761][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:34.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:34.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.766][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:34.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:34.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.771][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:34.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:34.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.776][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:34.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:34.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.781][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:34.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:34.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.786][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:34.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:34.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.791][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:34.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:34.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.796][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:34.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:34.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.801][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:34.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:34.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.813][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172414169, 3-(2-methoxyphenyl)-2,2-dimethyl-cyclopropanecarbaldehyde, 3-(2-methoxyphenyl)-2,2-dimethyl-1-cyclopropanecarboxaldehyde, 3-(2-methoxyphenyl)-2,2-dimethylcyclopropane-1-carbaldehyde, 3-(2-methoxyphenyl)-2,2-dimethyl-cyclopropane-1-carbaldehyde, ...].
biodb.DEBUG[2024-12-21 16:06:34.814][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:34.815][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-21 16:06:34.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:34.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:34.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:34.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:34.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:34.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:34.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:34.838][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-21 16:06:34.841][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-21 16:06:34.843][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-12-21 16:06:34.845][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:06:34.847][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-12-21 16:06:34.849][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-21 16:06:34.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:34.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:34.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:34.859][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:34.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:34.862][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:34.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:34.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:34.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:34.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:34.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:34.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:34.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:34.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:34.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:34.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:34.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:34.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:34.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:34.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:34.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:34.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.899][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:34.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:34.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:34.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:34.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:34.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:34.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:34.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:34.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:34.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:34.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.924][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:34.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:34.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.929][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:34.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:34.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:34.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:34.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.939][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:34.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:34.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:34.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:34.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.949][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:34.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:34.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.954][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:34.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:34.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.959][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:34.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:34.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.964][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:34.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:34.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:34.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:34.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:34.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:34.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:34.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:34.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.985][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:34.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:34.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.990][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:34.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:34.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:34.995][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:34.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:34.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:34.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:35.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:35.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.005][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:35.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:35.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.009][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:35.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:35.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.014][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:35.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:35.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.019][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:35.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:35.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.024][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:35.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:35.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.029][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:35.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:35.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.034][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:35.035][private$selectFields]
biodb.TRACE[2024-12-21 16:06:35.036][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:35.037][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:35.038][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:35.040][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:35.041][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:35.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.043][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.045][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:35.046][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:35.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.048][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.049][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:35.051][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:35.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.053][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.054][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:35.056][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:35.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.058][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.059][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:35.060][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:35.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.063][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.064][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:35.065][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:35.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.067][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.069][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:35.070][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:35.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.072][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.073][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:35.075][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:35.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.077][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.078][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:35.079][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:35.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.082][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.083][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:35.084][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:35.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.086][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.088][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:35.089][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:35.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.091][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.092][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:35.094][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:35.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.096][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.097][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:35.098][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:35.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.101][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.102][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:35.103][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:35.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.105][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.107][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:35.108][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:35.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.110][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.111][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:35.113][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:35.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.115][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.116][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:35.117][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:35.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.120][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.121][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:35.122][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:35.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.124][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.126][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:35.127][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:35.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.129][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.130][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:35.132][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:35.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.135][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.145][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:35.146][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:35.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.149][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.151][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:35.152][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:35.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.154][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.156][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:35.157][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:35.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.159][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.160][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:35.162][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:35.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.164][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.165][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:35.167][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:35.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.169][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.170][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:35.172][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:35.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.174][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.175][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:35.177][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:35.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.179][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.180][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:35.182][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:35.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.184][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.185][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:35.187][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:35.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.189][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.190][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:35.191][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:35.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.194][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.195][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:35.196][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:35.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.199][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.200][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:35.201][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:35.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.204][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.205][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:35.206][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:35.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.208][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.209][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:35.211][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:35.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.213][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.214][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:35.215][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:35.217][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:35.218][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:35.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.220][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.221][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:35.223][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:35.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.225][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.226][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:35.227][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:35.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.230][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.231][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:35.232][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:35.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.234][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.236][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:35.237][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:35.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.239][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.240][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:35.242][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:35.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.244][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.245][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:35.247][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:35.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.249][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.250][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:35.251][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:35.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.254][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.255][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:35.256][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:35.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.258][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.260][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:35.261][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:35.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.263][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.264][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:35.266][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:35.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.268][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.269][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:35.270][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:35.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.273][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.274][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:35.275][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:35.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.277][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.279][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:35.280][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:35.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.282][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.283][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:35.285][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:35.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.287][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.288][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:35.289][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:35.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.292][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.293][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-21 16:06:35.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:35.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:35.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:35.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:35.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:35.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:35.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:35.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:35.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:35.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:35.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.319][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:35.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:35.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.324][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:35.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:35.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:35.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:35.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:35.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:35.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.338][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:35.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:35.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:35.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:35.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:35.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:35.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:35.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:35.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:35.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:35.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:35.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:35.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:35.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:35.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:35.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:35.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:35.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:35.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.382][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:35.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:35.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.387][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:35.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:35.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.391][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:35.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:35.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:35.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:35.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:35.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:35.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:35.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:35.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:35.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:35.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.416][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:35.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:35.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:35.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:35.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.425][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:35.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:35.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.430][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:35.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:35.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.435][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:35.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:35.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:35.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:35.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:35.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:35.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:35.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:35.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:35.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:35.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:35.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:35.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:35.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:35.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.469][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:35.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:35.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.474][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:35.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:35.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.479][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:35.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:35.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.484][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:35.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:35.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:35.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:35.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:35.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:35.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.498][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:35.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:35.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.503][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:35.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:35.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.508][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:35.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:35.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.513][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:35.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:35.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.517][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:35.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:35.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.522][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:35.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:35.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.544][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172634706, 3-(3-chloropropyl)-6-fluoro-1-methyl-indazole, 3-(3-chloropropyl)-6-fluoro-1-methylindazole, 3-(3-chloropropyl)-6-fluoro-1-methylindazole, 3-(3-chloranylpropyl)-6-fluoranyl-1-methyl-indazole, ...].
biodb.DEBUG[2024-12-21 16:06:35.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:35.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:35.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:35.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:35.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:35.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:35.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:35.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:35.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:35.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:35.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:35.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.569][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:35.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:35.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:35.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:35.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.579][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:35.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:35.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:35.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:35.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.589][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:35.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:35.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:35.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:35.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:35.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:35.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:35.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:35.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:35.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:35.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:35.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:35.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.618][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:35.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:35.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.623][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:35.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:35.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:35.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:35.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:35.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:35.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:35.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:35.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:35.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:35.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.647][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:35.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:35.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.652][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:35.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:35.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:35.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:35.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:35.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:35.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:35.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:35.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:35.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:35.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.676][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:35.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:35.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.681][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:35.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:35.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.686][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:35.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:35.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.691][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:35.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:35.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.696][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:35.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:35.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.701][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:35.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:35.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:35.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:35.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.710][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:35.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:35.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.715][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:35.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:35.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.720][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:35.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:35.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.725][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:35.726][private$selectFields]
biodb.TRACE[2024-12-21 16:06:35.727][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:35.728][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:35.730][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:35.731][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:35.732][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:35.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.734][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.736][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:35.737][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:35.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.739][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.740][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:35.742][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:35.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.744][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.745][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:35.746][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:35.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.749][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.750][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:35.751][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:35.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.753][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.754][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:35.756][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:35.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.758][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.759][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:35.760][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:35.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.763][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.764][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:35.765][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:35.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.767][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.769][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:35.770][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:35.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.772][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.773][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:35.775][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:35.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.777][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.778][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:35.779][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:35.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.782][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.783][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:35.784][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:35.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.786][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.787][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:35.789][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:35.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.791][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.792][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:35.793][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:35.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.796][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.797][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:35.798][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:35.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.800][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.802][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:35.803][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:35.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.805][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.806][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:35.808][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:35.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.810][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.811][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:35.812][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:35.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.815][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.816][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:35.817][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:35.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.819][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.821][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:35.822][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:35.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.824][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.825][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:35.827][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:35.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.829][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.830][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:35.831][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:35.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.834][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.835][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:35.836][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:35.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.838][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.840][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:35.841][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:35.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.843][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.844][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:35.846][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:35.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.848][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.849][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:35.850][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:35.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.852][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.854][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:35.855][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:35.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.857][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.858][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:35.860][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:35.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.862][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.863][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:35.864][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:35.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.867][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.868][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:35.869][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:35.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.871][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.872][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:35.874][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:35.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.876][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.877][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:35.878][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:35.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.881][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.882][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:35.883][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:35.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.885][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.887][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:35.888][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:35.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.890][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.891][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:35.893][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:35.894][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:35.895][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:35.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.897][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.899][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:35.900][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:35.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.902][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.903][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:35.904][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:35.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.907][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.908][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:35.909][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:35.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.911][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.913][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:35.914][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:35.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.916][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.917][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:35.927][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:35.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.930][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.931][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:35.933][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:35.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.935][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.936][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:35.938][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:35.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.940][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.941][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:35.942][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:35.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.945][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.946][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:35.947][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:35.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.950][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.951][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:35.952][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:35.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.955][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.956][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:35.957][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:35.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.960][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.961][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:35.962][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:35.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.964][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.966][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:35.967][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:35.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.969][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.970][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:35.972][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:35.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.974][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.975][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:35.977][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:35.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.979][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.980][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-21 16:06:35.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:35.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:35.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:35.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:35.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:35.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:35.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:35.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:35.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:35.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:35.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:36.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:36.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:36.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:36.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:36.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:36.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:36.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:36.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:36.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:36.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.026][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:36.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:36.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.031][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:36.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:36.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:36.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:36.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.041][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:36.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:36.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.046][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:36.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:36.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.051][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:36.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:36.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:36.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:36.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.061][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:36.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:36.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:36.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:36.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.070][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:36.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:36.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.075][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:36.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:36.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.080][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:36.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:36.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:36.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:36.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:36.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:36.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.095][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:36.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:36.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.100][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:36.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:36.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:36.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:36.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:36.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:36.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.115][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:36.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:36.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.120][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:36.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:36.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.125][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:36.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:36.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:36.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:36.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:36.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:36.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:36.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:36.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:36.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:36.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:36.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:36.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:36.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:36.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.159][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:36.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:36.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.163][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:36.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:36.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.168][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:36.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:36.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.173][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:36.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:36.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:36.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:36.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:36.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:36.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.188][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:36.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:36.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.193][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:36.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:36.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.197][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:36.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:36.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.202][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:36.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:36.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.207][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:36.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:36.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.212][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:36.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:36.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.224][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172629519, (Z)-1-(3-chloro-5-methyl-pyrazin-2-yl)-1-hydroxy-pent-1-en-3-one, (Z)-1-(3-chloro-5-methyl-2-pyrazinyl)-1-hydroxy-1-penten-3-one, (Z)-1-(3-chloro-5-methylpyrazin-2-yl)-1-hydroxypent-1-en-3-one, (Z)-1-(3-chloranyl-5-methyl-pyrazin-2-yl)-1-oxidanyl-pent-1-en-3-one, ...].
biodb.DEBUG[2024-12-21 16:06:36.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:36.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:36.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:36.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:36.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:36.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:36.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:36.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:36.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:36.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:36.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:36.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:36.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:36.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:36.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:36.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.258][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:36.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:36.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:36.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:36.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.267][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:36.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:36.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:36.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:36.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:36.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:36.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.282][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:36.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:36.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.287][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:36.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:36.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:36.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:36.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.296][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:36.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:36.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.301][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:36.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:36.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.306][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:36.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:36.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.319][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:36.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:36.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:36.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:36.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:36.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:36.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.334][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:36.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:36.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.339][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:36.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:36.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:36.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:36.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:36.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:36.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:36.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:36.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:36.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:36.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.364][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:36.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:36.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.369][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:36.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:36.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:36.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:36.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.379][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:36.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:36.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.384][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:36.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:36.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.389][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:36.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:36.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.394][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:36.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:36.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.398][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:36.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:36.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.403][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:36.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:36.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.408][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:36.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:36.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.413][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:36.414][private$selectFields]
biodb.TRACE[2024-12-21 16:06:36.415][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-21 16:06:36.417][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-21 16:06:36.418][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-21 16:06:36.419][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:36.420][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:36.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.423][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.424][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:36.425][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:36.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.428][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.429][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:36.430][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:36.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.432][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.434][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:36.435][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:36.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.437][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.438][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:36.440][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:36.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.442][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.443][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:36.444][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:36.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.447][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.448][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:36.449][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:36.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.451][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.453][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:36.454][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:36.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.456][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.457][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:36.458][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:36.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.461][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.462][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:36.463][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:36.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.465][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.467][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:36.468][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:36.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.470][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.471][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:36.473][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:36.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.475][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.476][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:36.477][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:36.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.480][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.481][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:36.482][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:36.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.484][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.486][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:36.487][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:36.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.489][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.490][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:36.492][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:36.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.494][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.495][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:36.496][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:36.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.499][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.501][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:36.502][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:36.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.505][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.506][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:36.507][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:36.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.510][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.511][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:36.512][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:36.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.514][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.515][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:36.517][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:36.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.519][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.520][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:36.521][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:36.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.524][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.525][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:36.526][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:36.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.528][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.530][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:36.531][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:36.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.533][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.534][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:36.536][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:36.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.538][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.539][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:36.540][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:36.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.543][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.544][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-21 16:06:36.545][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-21 16:06:36.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.547][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.548][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:36.550][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:36.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.552][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.553][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:36.554][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:36.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.557][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.558][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:36.559][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:36.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.561][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.563][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:36.564][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:36.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.566][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.567][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:36.569][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:36.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.571][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.572][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:36.573][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:36.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.576][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.577][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-21 16:06:36.578][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-21 16:06:36.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.580][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.581][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-12-21 16:06:36.583][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-12-21 16:06:36.584][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:36.585][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:36.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.587][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.589][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:36.590][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:36.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.592][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.593][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:36.595][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:36.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.597][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.598][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:36.599][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:36.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.602][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.603][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:36.604][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:36.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.606][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.608][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:36.609][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:36.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.611][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.612][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:36.613][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:36.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.616][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.617][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:36.618][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:36.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.620][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.622][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:36.623][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:36.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.625][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.626][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:36.628][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:36.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.630][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.631][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:36.632][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:36.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.635][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.636][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:36.637][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:36.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.639][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.640][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:36.642][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:36.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.644][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.645][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:36.646][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:36.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.649][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.650][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:36.651][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:36.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.653][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.655][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-21 16:06:36.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:36.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:36.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:36.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:36.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:36.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:36.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:36.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:36.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:36.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:36.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.680][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:36.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-21 16:06:36.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.685][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:36.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:36.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:36.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:36.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:36.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-21 16:06:36.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:36.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:36.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.713][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:36.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:36.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:36.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-21 16:06:36.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:36.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:36.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:36.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:36.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:36.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-21 16:06:36.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:36.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:36.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:36.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:36.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:36.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-21 16:06:36.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.754][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:36.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:36.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.759][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:36.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:36.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.764][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-21 16:06:36.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-21 16:06:36.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:36.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:36.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.773][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:36.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:36.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-21 16:06:36.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-21 16:06:36.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:36.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:36.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.788][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:36.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:36.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-21 16:06:36.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-21 16:06:36.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:36.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:36.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.802][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:36.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:36.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:36.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-21 16:06:36.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:36.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:36.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:36.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:36.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:36.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-21 16:06:36.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.827][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:36.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:36.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.832][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:36.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:36.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.837][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-21 16:06:36.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-21 16:06:36.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.842][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:36.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:36.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.847][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:36.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:36.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:36.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:36.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.857][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:36.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:36.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.861][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:36.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:36.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.866][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:36.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-21 16:06:36.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.871][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:36.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:36.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.876][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:36.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:36.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.881][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:36.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-21 16:06:36.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.893][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172621093, 1-isopropyl-3-methyl-piperazin-4-ide;rubidium(1+), 3-methyl-1-propan-2-ylpiperazin-4-ide;rubidium(1+), 3-methyl-1-propan-2-ylpiperazin-4-ide;rubidium(1+), 3-methyl-1-propan-2-yl-piperazin-4-ide;rubidium(1+), ...].
biodb.DEBUG[2024-12-21 16:06:36.894][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-21 16:06:36.895][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-21 16:06:36.902][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-21 16:06:36.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-21 16:06:36.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:36.907][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-21 16:06:36.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-21 16:06:36.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:36.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-21 16:06:36.916][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-12-21 16:06:36.918][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.comp from the request scheduler
biodb.INFO [2024-12-21 16:06:36.919][self$deleteConn] Connector "ncbi.pubchem.comp" deleted.
biodb.DEBUG[2024-12-21 16:06:36.920][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-12-21 16:06:36.921][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:36.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:36.924][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:36.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:36.926][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:36.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-12-21 16:06:36.932][biodb::testContext]
biodb.INFO [2024-12-21 16:06:36.933][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-21 16:06:36.934][biodb::testContext] Test context - Pubchem Subst long tests
biodb.INFO [2024-12-21 16:06:36.935][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-21 16:06:36.936][biodb::testContext]
biodb.INFO [2024-12-21 16:06:36.939][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-12-21 16:06:36.942][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-12-21 16:06:36.947][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-21 16:06:36.948][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-12-21 16:06:36.950][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-12-21 16:06:36.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:36.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:36.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:36.954][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-12-21 16:06:36.955][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-12-21 16:06:36.956][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:36.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:36.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:36.960][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-12-21 16:06:36.961][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-12-21 16:06:36.962][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:36.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:36.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:36.965][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-12-21 16:06:36.967][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-12-21 16:06:36.968][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-12-21 16:06:36.969][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:36.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:36.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:36.972][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-12-21 16:06:36.973][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-12-21 16:06:36.975][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-12-21 16:06:36.976][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:36.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:36.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:36.979][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-12-21 16:06:36.980][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-12-21 16:06:36.981][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:36.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:36.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:36.985][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-12-21 16:06:36.986][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-12-21 16:06:36.987][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-12-21 16:06:36.988][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:36.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:36.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:36.991][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-12-21 16:06:36.993][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-12-21 16:06:36.994][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:36.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:36.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:36.997][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-12-21 16:06:36.998][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-12-21 16:06:36.999][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-12-21 16:06:37.001][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.004][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-12-21 16:06:37.005][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-12-21 16:06:37.006][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-12-21 16:06:37.007][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-12-21 16:06:37.009][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-12-21 16:06:37.010][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-12-21 16:06:37.011][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.014][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-12-21 16:06:37.015][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-12-21 16:06:37.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.020][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-12-21 16:06:37.021][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-12-21 16:06:37.022][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.026][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-12-21 16:06:37.027][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-12-21 16:06:37.028][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.031][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-12-21 16:06:37.032][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-12-21 16:06:37.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.037][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-12-21 16:06:37.038][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-12-21 16:06:37.039][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.042][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-12-21 16:06:37.044][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-12-21 16:06:37.047][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-12-21 16:06:37.048][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.052][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-12-21 16:06:37.053][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-12-21 16:06:37.054][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-12-21 16:06:37.055][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.059][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-12-21 16:06:37.061][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-21 16:06:37.062][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-12-21 16:06:37.063][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.064][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-21 16:06:37.066][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.067][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-21 16:06:37.068][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-21 16:06:37.069][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-21 16:06:37.070][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-21 16:06:37.072][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-21 16:06:37.073][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.074][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-12-21 16:06:37.075][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-21 16:06:37.076][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:06:37.078][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.079][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-21 16:06:37.079][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-21 16:06:37.079][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-21 16:06:37.079][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-21 16:06:37.079][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-21 16:06:37.080][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-21 16:06:37.081][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:06:37.082][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:06:37.084][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-21 16:06:37.085][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:06:37.086][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:06:37.087][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-21 16:06:37.088][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:06:37.089][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-21 16:06:37.090][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-21 16:06:37.092][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-21 16:06:37.093][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:06:37.094][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-12-21 16:06:37.105][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-21 16:06:37.106][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-12-21 16:06:37.108][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.109][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-21 16:06:37.110][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.112][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-21 16:06:37.113][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-21 16:06:37.114][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-21 16:06:37.115][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-21 16:06:37.117][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-21 16:06:37.118][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.119][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-12-21 16:06:37.120][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-21 16:06:37.121][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:06:37.123][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.124][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-21 16:06:37.124][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-21 16:06:37.124][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-21 16:06:37.124][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-21 16:06:37.124][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-21 16:06:37.125][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-21 16:06:37.127][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:06:37.128][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:06:37.129][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-21 16:06:37.130][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:06:37.131][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:06:37.133][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-21 16:06:37.134][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:06:37.135][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-21 16:06:37.136][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-21 16:06:37.137][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-21 16:06:37.139][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:06:37.140][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-12-21 16:06:37.142][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.143][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-12-21 16:06:37.145][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.146][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-21 16:06:37.147][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.148][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-21 16:06:37.149][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-21 16:06:37.151][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-21 16:06:37.152][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-21 16:06:37.153][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-21 16:06:37.154][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-21 16:06:37.156][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-12-21 16:06:37.157][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-21 16:06:37.158][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:06:37.159][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.161][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:06:37.162][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-21 16:06:37.163][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:06:37.164][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:06:37.165][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-21 16:06:37.167][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:06:37.168][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:06:37.169][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-21 16:06:37.170][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:06:37.171][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-21 16:06:37.172][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-21 16:06:37.173][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-21 16:06:37.175][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:06:37.176][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-12-21 16:06:37.178][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.179][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-12-21 16:06:37.180][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.182][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-21 16:06:37.183][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.184][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-21 16:06:37.185][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-21 16:06:37.186][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-21 16:06:37.188][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-21 16:06:37.189][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-21 16:06:37.190][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-21 16:06:37.191][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-12-21 16:06:37.192][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-21 16:06:37.194][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:06:37.195][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.196][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:06:37.197][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-21 16:06:37.199][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:06:37.200][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:06:37.201][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-21 16:06:37.202][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:06:37.203][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:06:37.204][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-21 16:06:37.206][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:06:37.207][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-21 16:06:37.208][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-21 16:06:37.209][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-21 16:06:37.210][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:06:37.212][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-21 16:06:37.213][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.215][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.221][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.226][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.237][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.243][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.254][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.259][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.265][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.270][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.276][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.281][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.287][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.293][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.298][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.304][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.309][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-12-21 16:06:37.311][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-12-21 16:06:37.312][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-12-21 16:06:37.314][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-12-21 16:06:37.316][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-12-21 16:06:37.317][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-12-21 16:06:37.319][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-12-21 16:06:37.320][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-12-21 16:06:37.322][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-12-21 16:06:37.324][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-12-21 16:06:37.325][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-12-21 16:06:37.327][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-12-21 16:06:37.328][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-12-21 16:06:37.330][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-12-21 16:06:37.331][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-12-21 16:06:37.333][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-12-21 16:06:37.334][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-12-21 16:06:37.336][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-12-21 16:06:37.338][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-12-21 16:06:37.339][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-12-21 16:06:37.341][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-12-21 16:06:37.342][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-12-21 16:06:37.344][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-12-21 16:06:37.346][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-12-21 16:06:37.347][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-12-21 16:06:37.349][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-12-21 16:06:37.350][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-12-21 16:06:37.352][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-12-21 16:06:37.354][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-12-21 16:06:37.355][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-12-21 16:06:37.357][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-12-21 16:06:37.358][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-12-21 16:06:37.360][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-12-21 16:06:37.361][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-12-21 16:06:37.363][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-12-21 16:06:37.365][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-12-21 16:06:37.366][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-12-21 16:06:37.368][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-12-21 16:06:37.369][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-12-21 16:06:37.371][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-12-21 16:06:37.372][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-12-21 16:06:37.374][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-12-21 16:06:37.376][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-12-21 16:06:37.377][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-12-21 16:06:37.379][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-12-21 16:06:37.380][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-12-21 16:06:37.382][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-12-21 16:06:37.384][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-12-21 16:06:37.385][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-12-21 16:06:37.387][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-12-21 16:06:37.388][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-12-21 16:06:37.390][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-12-21 16:06:37.391][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-12-21 16:06:37.393][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-12-21 16:06:37.395][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-12-21 16:06:37.396][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-12-21 16:06:37.398][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-12-21 16:06:37.399][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-12-21 16:06:37.401][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-12-21 16:06:37.403][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-12-21 16:06:37.404][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-12-21 16:06:37.406][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-12-21 16:06:37.407][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-12-21 16:06:37.409][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-12-21 16:06:37.410][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-12-21 16:06:37.412][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-12-21 16:06:37.414][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-12-21 16:06:37.415][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-12-21 16:06:37.417][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-12-21 16:06:37.418][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-12-21 16:06:37.420][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-12-21 16:06:37.422][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-12-21 16:06:37.423][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-12-21 16:06:37.425][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-12-21 16:06:37.426][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-12-21 16:06:37.428][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-12-21 16:06:37.429][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-12-21 16:06:37.431][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-12-21 16:06:37.433][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-12-21 16:06:37.434][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-12-21 16:06:37.436][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-12-21 16:06:37.437][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-12-21 16:06:37.439][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-12-21 16:06:37.441][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-12-21 16:06:37.443][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-12-21 16:06:37.444][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-21 16:06:37.445][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.448][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.450][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:37.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:37.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.457][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:37.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:37.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.465][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:37.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:37.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:37.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:37.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.681][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:37.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:37.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.688][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:37.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:37.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.696][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:37.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:37.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.703][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:37.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:37.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:37.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:37.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.718][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:37.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:37.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.725][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:37.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:37.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.733][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:37.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:37.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.740][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:37.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:37.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.747][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:37.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:37.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.755][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:37.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:37.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.762][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:37.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:37.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.770][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-21 16:06:37.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:37.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:37.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-21 16:06:37.779][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-12-21 16:06:37.789][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-12-21 16:06:37.791][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.792][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-12-21 16:06:37.793][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.794][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-21 16:06:37.795][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.796][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-21 16:06:37.798][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.799][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-21 16:06:37.800][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-12-21 16:06:37.801][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-21 16:06:37.802][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.804][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-12-21 16:06:37.805][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-21 16:06:37.806][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-12-21 16:06:37.806][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-12-21 16:06:37.807][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-21 16:06:37.808][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:06:37.809][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-12-21 16:06:37.811][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:06:37.812][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:06:37.813][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-21 16:06:37.814][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:06:37.815][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:06:37.816][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-21 16:06:37.817][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-12-21 16:06:37.817][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-12-21 16:06:37.819][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-21 16:06:37.820][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-21 16:06:37.821][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.822][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:06:37.823][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-12-21 16:06:37.825][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.827][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-12-21 16:06:37.828][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.829][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-21 16:06:37.830][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.831][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-21 16:06:37.832][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.834][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-21 16:06:37.835][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-21 16:06:37.836][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-21 16:06:37.837][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.838][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-12-21 16:06:37.840][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-21 16:06:37.841][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-12-21 16:06:37.841][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-12-21 16:06:37.841][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-12-21 16:06:37.841][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-12-21 16:06:37.841][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-12-21 16:06:37.841][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-12-21 16:06:37.842][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-21 16:06:37.843][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-21 16:06:37.844][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-12-21 16:06:37.846][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:06:37.847][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:06:37.848][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-21 16:06:37.849][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:06:37.850][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:06:37.851][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-21 16:06:37.852][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-21 16:06:37.852][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-12-21 16:06:37.854][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-21 16:06:37.855][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-21 16:06:37.856][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.857][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:06:37.858][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-12-21 16:06:37.860][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-21 16:06:37.862][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-12-21 16:06:37.863][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.864][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-21 16:06:37.865][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.866][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-21 16:06:37.868][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.869][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-21 16:06:37.870][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-21 16:06:37.871][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-21 16:06:37.872][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.874][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-12-21 16:06:37.875][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-21 16:06:37.876][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-12-21 16:06:37.876][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:06:37.876][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:06:37.876][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:06:37.876][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:06:37.876][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:06:37.876][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:06:37.876][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:06:37.876][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:06:37.876][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:06:37.876][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-12-21 16:06:37.876][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:06:37.876][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:06:37.876][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-21 16:06:37.878][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-21 16:06:37.879][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-21 16:06:37.879][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-21 16:06:37.879][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-21 16:06:37.880][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-12-21 16:06:37.881][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:06:37.882][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:06:37.883][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-21 16:06:37.884][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:06:37.886][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:06:37.887][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-21 16:06:37.888][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-21 16:06:37.888][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-12-21 16:06:37.888][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-12-21 16:06:37.889][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-21 16:06:37.890][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-21 16:06:37.891][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.892][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-12-21 16:06:37.894][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-12-21 16:06:37.896][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.897][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-12-21 16:06:37.898][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.899][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-21 16:06:37.901][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.902][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-21 16:06:37.903][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.904][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-21 16:06:37.905][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-21 16:06:37.906][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-21 16:06:37.908][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.909][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-12-21 16:06:37.910][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-21 16:06:37.911][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-12-21 16:06:37.911][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-12-21 16:06:37.912][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-21 16:06:37.914][self$setPropertyValue]
biodb.DEBUG[2024-12-21 16:06:37.915][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-12-21 16:06:37.916][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:06:37.917][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:06:37.918][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-21 16:06:37.919][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-21 16:06:37.920][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-21 16:06:37.922][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-21 16:06:37.923][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-21 16:06:37.923][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-12-21 16:06:37.923][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-12-21 16:06:37.924][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-21 16:06:37.925][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-21 16:06:37.926][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-21 16:06:37.927][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-12-21 16:06:37.929][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-12-21 16:06:37.930][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-12-21 16:06:37.932][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-12-21 16:06:37.934][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-12-21 16:06:37.936][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-12-21 16:06:37.937][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-12-21 16:06:37.942][super$initialize] Initialize connector ncbi.pubchem.subst.
biodb.DEBUG[2024-12-21 16:06:37.944][super$initialize] Register connector ncbi.pubchem.subst with the request scheduler
biodb.DEBUG[2024-12-21 16:06:37.945][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.subst.
biodb.DEBUG[2024-12-21 16:06:37.947][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2024-12-21 16:06:37.948][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-12-21 16:06:37.949][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-12-21 16:06:37.951][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2024-12-21 16:06:37.953][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-12-21 16:06:37.954][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-12-21 16:06:37.955][rule$addConnector] Connector "ncbi.pubchem.subst" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-12-21 16:06:37.960][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.subst for database class ncbi.pubchem.subst .
biodb.INFO [2024-12-21 16:06:37.966][biodb::testThat]
biodb.INFO [2024-12-21 16:06:37.967][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-12-21 16:06:37.968][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:06:37.969][biodb::testThat]
biodb.TRACE[2024-12-21 16:06:37.973][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.subst-3-content.xml".
biodb.DEBUG[2024-12-21 16:06:37.975][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2024-12-21 16:06:37.978][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2024-12-21 16:06:37.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:37.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:37.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:37.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:37.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:37.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:37.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:37.994][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:37.996][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:37.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:37.998][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:38.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:38.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.004][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:38.006][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:38.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.008][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.009][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:38.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:38.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.014][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-21 16:06:38.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-21 16:06:38.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.019][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-21 16:06:38.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-21 16:06:38.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:38.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:38.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.029][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-21 16:06:38.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-21 16:06:38.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:38.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:38.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:38.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:38.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:38.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:38.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:38.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:38.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:38.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:38.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:38.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:38.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:38.062][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3.
biodb.TRACE[2024-12-21 16:06:38.065][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:06:38.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:06:38.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.075][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:06:38.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:06:38.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.080][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:06:38.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:06:38.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.085][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:06:38.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:06:38.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.090][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:06:38.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:06:38.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.095][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-21 16:06:38.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-21 16:06:38.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.100][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-21 16:06:38.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-21 16:06:38.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:38.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:38.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.117][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-21 16:06:38.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-21 16:06:38.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:38.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:38.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:38.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:38.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:38.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:38.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:38.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:38.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:38.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:38.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:38.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:38.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.159][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-21 16:06:38.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-21 16:06:38.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-21 16:06:38.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-21 16:06:38.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.169][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-21 16:06:38.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-21 16:06:38.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:38.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:38.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:38.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:38.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:38.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:38.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.199][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:38.200][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:38.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.202][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:38.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:38.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.218][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:38.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:38.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.223][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:38.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:38.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.227][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:38.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:38.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.232][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:38.233][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:38.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.236][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.237][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:38.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:38.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.251][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:38.252][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:38.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.255][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.261][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:38.262][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:38.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.264][ef$get] fields variable is a list.
biodb.INFO [2024-12-21 16:06:38.275][biodb::testThat]
biodb.INFO [2024-12-21 16:06:38.277][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-12-21 16:06:38.278][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:06:38.279][biodb::testThat]
biodb.DEBUG[2024-12-21 16:06:38.282][private$loadEntries] Creating entries from ids [1]: "3".
biodb.DEBUG[2024-12-21 16:06:38.284][conn$getEntryContent] Get PubChem Substance entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-21 16:06:38.287][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3".
biodb.TRACE[2024-12-21 16:06:38.289][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-21 16:06:38.301][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.subst-e80afa72f6aa7425ca0c72f99f7b9d75/3.xml".
biodb.DEBUG[2024-12-21 16:06:38.303][conn$getEntryContent] 1 PubChem Substance entry content(s) loaded from cache.
biodb.DEBUG[2024-12-21 16:06:38.305][self$createEntryFromContent] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2024-12-21 16:06:38.306][self$createEntryFromContent] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2024-12-21 16:06:38.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-21 16:06:38.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:38.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:38.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:38.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:38.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:38.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-21 16:06:38.323][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:38.324][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:38.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.326][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:38.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:38.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.346][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:38.348][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:38.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.350][ef$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.351][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:38.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-21 16:06:38.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-21 16:06:38.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-21 16:06:38.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.361][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-21 16:06:38.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-21 16:06:38.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:38.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:38.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-21 16:06:38.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-21 16:06:38.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:38.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:38.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:38.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:38.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:38.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:38.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:38.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:38.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:38.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:38.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-21 16:06:38.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-21 16:06:38.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-21 16:06:38.404][self$createEntryFromContent] Accession numbers: 3.
biodb.TRACE[2024-12-21 16:06:38.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-21 16:06:38.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-21 16:06:38.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-21 16:06:38.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-21 16:06:38.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-21 16:06:38.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-21 16:06:38.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-21 16:06:38.430][biodb::testThat]
biodb.INFO [2024-12-21 16:06:38.432][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-12-21 16:06:38.433][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:06:38.434][biodb::testThat]
biodb.INFO [2024-12-21 16:06:38.442][biodb::testThat]
biodb.INFO [2024-12-21 16:06:38.443][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-12-21 16:06:38.444][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:06:38.446][biodb::testThat]
biodb.WARN [2024-12-21 16:06:38.449][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2024-12-21 16:06:38.453][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2024-12-21 16:06:38.463][biodb::testThat]
biodb.INFO [2024-12-21 16:06:38.465][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-12-21 16:06:38.466][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:06:38.467][biodb::testThat]
biodb.TRACE[2024-12-21 16:06:38.479][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:06:38.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:06:38.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.484][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:06:38.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:06:38.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:06:38.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:06:38.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.493][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:06:38.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:06:38.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.503][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:06:38.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:06:38.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.508][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-21 16:06:38.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-21 16:06:38.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.513][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-21 16:06:38.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-21 16:06:38.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.519][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:06:38.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:06:38.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.523][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-21 16:06:38.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-21 16:06:38.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:06:38.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-21 16:06:38.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.533][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:06:38.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:06:38.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.537][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-21 16:06:38.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-21 16:06:38.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.542][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-21 16:06:38.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-21 16:06:38.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-21 16:06:38.547][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-21 16:06:38.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-21 16:06:38.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-21 16:06:38.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-21 16:06:38.558][biodb::testThat]
biodb.INFO [2024-12-21 16:06:38.559][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-12-21 16:06:38.561][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:06:38.562][biodb::testThat]
biodb.INFO [2024-12-21 16:06:38.572][biodb::testThat]
biodb.INFO [2024-12-21 16:06:38.573][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-12-21 16:06:38.574][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:06:38.575][biodb::testThat]
biodb.INFO [2024-12-21 16:06:38.586][biodb::testThat]
biodb.INFO [2024-12-21 16:06:38.587][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-12-21 16:06:38.588][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:06:38.589][biodb::testThat]
biodb.DEBUG[2024-12-21 16:06:38.593][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/substance/3".
biodb.DEBUG[2024-12-21 16:06:38.665][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/substance/3.
biodb.INFO [2024-12-21 16:06:38.809][biodb::testThat]
biodb.INFO [2024-12-21 16:06:38.811][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-12-21 16:06:38.812][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-21 16:06:38.813][biodb::testThat]
biodb.DEBUG[2024-12-21 16:06:38.886][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=3&t=l.
biodb.INFO [2024-12-21 16:06:38.975][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-12-21 16:06:38.977][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.subst from the request scheduler
biodb.INFO [2024-12-21 16:06:38.978][self$deleteConn] Connector "ncbi.pubchem.subst" deleted.
biodb.DEBUG[2024-12-21 16:06:38.980][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-12-21 16:06:38.981][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-21 16:06:38.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-21 16:06:38.983][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-21 16:06:38.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-21 16:06:38.985][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-12-21 16:06:38.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1039 ]
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1039 ]
>
> proc.time()
user system elapsed
57.37 2.98 93.57
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.10.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck'
* using R version 4.4.2 (2024-10-31 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using options '--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error'
* checking for file 'biodbNcbi/DESCRIPTION' ... OK
* this is package 'biodbNcbi' version '1.10.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbNcbi' can be installed ... OK
* checking installed package size ... NOTE
installed size is 8.1Mb
sub-directories of 1Mb or more:
testref 7.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in 'longtests' ... WARNING
'library' or 'require' call not declared from: 'biodbNci'
* checking tests in 'longtests' ...
Running 'testthat.R'
OK
* DONE
Status: 1 WARNING, 2 NOTEs
See
'F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/00check.log'
for details.
biodbNcbi.Rcheck/00install.out
* installing *source* package 'biodbNcbi' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biodbNcbi)