Back to Long Tests report for BioC 3.21

This page was generated on 2025-05-24 23:55 -0400 (Sat, 24 May 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4836
palomino7Windows Server 2022 Datacenterx644.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" 4577
merida1macOS 12.7.5 Montereyx86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4601
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 8/30HostnameOS / ArchCHECK
biodbNcbi 1.12.0  (landing page)
Pierrick Roger
Snapshot Date: 2025-05-24 09:55 -0400 (Sat, 24 May 2025)
git_url: https://git.bioconductor.org/packages/biodbNcbi
git_branch: RELEASE_3_21
git_last_commit: eff8ab9
git_last_commit_date: 2025-04-15 12:47:49 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR  
palomino7Windows Server 2022 Datacenter / x64  WARNINGS  
merida1macOS 12.7.5 Monterey / x86_64  WARNINGS  

CHECK results for biodbNcbi on merida1

To the developers/maintainers of the biodbNcbi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbNcbi
Version: 1.12.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.12.0.tar.gz
StartedAt: 2025-05-24 16:01:23 -0400 (Sat, 24 May 2025)
EndedAt: 2025-05-24 16:03:46 -0400 (Sat, 24 May 2025)
EllapsedTime: 143.4 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbNcbi.Rcheck
Warnings: 1

Tests output

biodbNcbi.Rcheck/tests/testthat.Rout


R version 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbNci)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbNcbi")
Loading required package: biodbNcbi
biodb.INFO [2025-05-24 16:02:17.689][biodb::testContext]
biodb.INFO [2025-05-24 16:02:17.693][biodb::testContext] ********************************************************************************
biodb.INFO [2025-05-24 16:02:17.694][biodb::testContext] Test context - CCDS long tests
biodb.INFO [2025-05-24 16:02:17.695][biodb::testContext] ********************************************************************************
biodb.INFO [2025-05-24 16:02:17.696][biodb::testContext]
biodb.INFO [2025-05-24 16:02:17.703][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-05-24 16:02:17.705][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-05-24 16:02:17.712][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-05-24 16:02:17.714][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-05-24 16:02:17.715][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-05-24 16:02:17.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:17.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:17.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:17.720][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-05-24 16:02:17.745][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-05-24 16:02:17.746][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:17.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:17.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:17.750][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-05-24 16:02:17.751][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-05-24 16:02:17.752][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:17.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:17.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:17.755][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-05-24 16:02:17.757][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-05-24 16:02:17.758][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-05-24 16:02:17.759][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:17.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:17.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:17.763][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-05-24 16:02:17.764][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-05-24 16:02:17.765][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-05-24 16:02:17.766][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:17.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:17.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:17.769][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-05-24 16:02:17.771][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-05-24 16:02:17.772][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:17.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:17.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:17.775][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-05-24 16:02:17.776][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-05-24 16:02:17.777][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-05-24 16:02:17.779][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:17.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:17.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:17.782][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-05-24 16:02:17.783][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-05-24 16:02:17.784][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:17.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:17.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:17.787][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-05-24 16:02:17.789][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-05-24 16:02:17.790][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-05-24 16:02:17.791][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:17.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:17.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:17.794][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-05-24 16:02:17.796][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-05-24 16:02:17.797][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-05-24 16:02:17.798][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-05-24 16:02:17.799][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-05-24 16:02:17.800][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-05-24 16:02:17.801][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:17.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:17.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:17.805][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-05-24 16:02:17.806][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-05-24 16:02:17.807][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:17.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:17.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:17.810][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-05-24 16:02:17.811][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-05-24 16:02:17.813][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:17.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:17.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:17.816][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-05-24 16:02:17.817][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-05-24 16:02:17.818][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:17.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:17.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:17.821][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-05-24 16:02:17.823][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-05-24 16:02:17.824][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:17.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:17.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:17.827][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-05-24 16:02:17.828][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-05-24 16:02:17.829][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:17.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:17.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:17.832][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-05-24 16:02:17.834][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-05-24 16:02:17.844][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-05-24 16:02:17.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:17.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:17.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:17.848][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-05-24 16:02:17.850][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-05-24 16:02:17.851][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-05-24 16:02:17.852][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:17.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:17.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:17.858][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-05-24 16:02:17.906][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:17.927][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-05-24 16:02:17.928][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:17.929][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-05-24 16:02:17.931][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:17.932][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-05-24 16:02:17.933][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:17.934][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-05-24 16:02:17.935][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-05-24 16:02:17.936][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-05-24 16:02:17.938][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:17.939][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-05-24 16:02:17.940][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-05-24 16:02:17.941][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:17.942][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:17.944][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-05-24 16:02:17.944][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-05-24 16:02:17.944][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-05-24 16:02:17.944][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-05-24 16:02:17.944][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-05-24 16:02:17.945][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-05-24 16:02:17.946][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:17.947][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:17.948][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-05-24 16:02:17.950][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:17.951][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:17.952][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-05-24 16:02:17.953][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:17.954][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-05-24 16:02:17.955][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-05-24 16:02:17.956][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:17.958][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:17.959][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-05-24 16:02:17.961][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:17.962][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-05-24 16:02:17.964][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:17.965][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-05-24 16:02:17.966][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:17.967][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-05-24 16:02:17.968][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:17.970][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-05-24 16:02:17.971][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-05-24 16:02:17.972][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-05-24 16:02:17.973][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:17.974][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-05-24 16:02:17.976][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-05-24 16:02:17.977][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:17.978][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:17.979][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-05-24 16:02:17.979][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-05-24 16:02:17.979][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-05-24 16:02:17.979][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-05-24 16:02:17.979][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-05-24 16:02:17.980][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-05-24 16:02:17.982][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:17.983][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:17.984][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-05-24 16:02:17.985][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:17.986][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:17.987][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-05-24 16:02:17.988][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:17.990][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-05-24 16:02:17.991][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-05-24 16:02:17.992][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:17.993][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:17.995][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-05-24 16:02:17.997][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:17.998][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-05-24 16:02:17.999][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:18.000][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-05-24 16:02:18.002][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:18.003][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-05-24 16:02:18.004][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:18.005][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-05-24 16:02:18.006][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-05-24 16:02:18.008][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-05-24 16:02:18.009][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:18.010][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-05-24 16:02:18.011][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-05-24 16:02:18.013][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:18.014][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:18.015][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:18.016][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-05-24 16:02:18.017][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:18.019][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:18.020][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-05-24 16:02:18.021][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:18.022][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:18.023][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-05-24 16:02:18.024][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:18.026][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-05-24 16:02:18.027][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-05-24 16:02:18.028][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:18.029][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:18.031][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-05-24 16:02:18.033][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:18.034][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-05-24 16:02:18.035][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:18.036][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-05-24 16:02:18.038][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:18.039][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-05-24 16:02:18.040][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:18.041][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-05-24 16:02:18.042][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-05-24 16:02:18.044][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-05-24 16:02:18.045][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:18.046][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-05-24 16:02:18.047][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-05-24 16:02:18.049][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:18.050][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:18.051][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:18.052][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-05-24 16:02:18.053][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:18.054][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:18.056][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-05-24 16:02:18.057][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:18.058][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:18.059][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-05-24 16:02:18.060][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:18.061][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-05-24 16:02:18.063][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-05-24 16:02:18.064][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:18.065][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:18.069][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-05-24 16:02:18.070][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.072][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.078][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.084][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.089][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.094][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.100][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.105][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.111][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.112][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.114][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.116][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.122][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.130][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.132][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.137][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.143][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.148][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.154][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.159][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.164][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.170][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-05-24 16:02:18.175][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-05-24 16:02:18.177][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-05-24 16:02:18.178][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-05-24 16:02:18.180][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-05-24 16:02:18.182][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-05-24 16:02:18.184][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-05-24 16:02:18.185][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-05-24 16:02:18.187][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-05-24 16:02:18.189][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-05-24 16:02:18.191][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-05-24 16:02:18.192][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-05-24 16:02:18.194][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-05-24 16:02:18.196][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-05-24 16:02:18.197][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-05-24 16:02:18.199][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-05-24 16:02:18.201][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-05-24 16:02:18.203][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-05-24 16:02:18.204][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-05-24 16:02:18.206][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-05-24 16:02:18.208][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-05-24 16:02:18.209][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-05-24 16:02:18.211][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-05-24 16:02:18.213][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-05-24 16:02:18.215][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-05-24 16:02:18.216][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-05-24 16:02:18.218][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-05-24 16:02:18.220][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-05-24 16:02:18.222][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-05-24 16:02:18.223][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-05-24 16:02:18.225][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-05-24 16:02:18.227][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-05-24 16:02:18.228][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-05-24 16:02:18.230][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-05-24 16:02:18.232][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-05-24 16:02:18.233][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-05-24 16:02:18.235][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-05-24 16:02:18.237][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-05-24 16:02:18.239][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-05-24 16:02:18.240][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-05-24 16:02:18.242][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-05-24 16:02:18.244][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-05-24 16:02:18.245][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-05-24 16:02:18.247][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-05-24 16:02:18.249][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-05-24 16:02:18.251][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-05-24 16:02:18.252][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-05-24 16:02:18.254][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-05-24 16:02:18.256][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-05-24 16:02:18.258][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-05-24 16:02:18.259][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-05-24 16:02:18.261][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-05-24 16:02:18.263][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-05-24 16:02:18.264][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-05-24 16:02:18.266][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-05-24 16:02:18.268][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-05-24 16:02:18.269][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-05-24 16:02:18.271][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-05-24 16:02:18.273][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-05-24 16:02:18.275][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-05-24 16:02:18.276][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-05-24 16:02:18.278][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-05-24 16:02:18.280][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-05-24 16:02:18.281][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-05-24 16:02:18.283][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-05-24 16:02:18.285][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-05-24 16:02:18.287][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-05-24 16:02:18.288][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-05-24 16:02:18.290][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-05-24 16:02:18.292][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-05-24 16:02:18.293][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-05-24 16:02:18.295][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-05-24 16:02:18.297][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-05-24 16:02:18.299][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-05-24 16:02:18.300][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-05-24 16:02:18.302][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-05-24 16:02:18.304][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-05-24 16:02:18.306][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-05-24 16:02:18.307][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-05-24 16:02:18.309][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-05-24 16:02:18.311][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-05-24 16:02:18.313][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-05-24 16:02:18.314][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-05-24 16:02:18.322][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-05-24 16:02:18.324][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-05-24 16:02:18.328][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-05-24 16:02:18.329][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.331][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.339][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:18.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:18.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.347][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:18.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:18.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.359][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:18.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:18.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.367][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:18.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:18.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.374][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:18.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:18.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.380][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.382][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:18.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:18.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.389][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:18.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:18.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.397][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:18.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:18.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.405][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:18.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:18.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.412][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:18.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:18.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.420][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:18.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:18.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.428][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:18.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:18.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.435][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:18.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:18.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.442][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:18.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:18.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.450][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:18.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:18.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.457][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:18.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:18.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.465][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:18.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:18.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:18.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:18.474][bdb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2025-05-24 16:02:18.487][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2025-05-24 16:02:18.489][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:18.490][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2025-05-24 16:02:18.492][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:18.493][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-05-24 16:02:18.494][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:18.495][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-05-24 16:02:18.497][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:18.498][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-05-24 16:02:18.499][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2025-05-24 16:02:18.500][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-05-24 16:02:18.501][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:18.503][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2025-05-24 16:02:18.504][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-05-24 16:02:18.505][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2025-05-24 16:02:18.505][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2025-05-24 16:02:18.507][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:18.508][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:18.509][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-05-24 16:02:18.510][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:18.511][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:18.512][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-05-24 16:02:18.514][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:18.515][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:18.516][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-05-24 16:02:18.517][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-05-24 16:02:18.517][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2025-05-24 16:02:18.518][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-05-24 16:02:18.519][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-05-24 16:02:18.521][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:18.522][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:18.523][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2025-05-24 16:02:18.526][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:18.527][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2025-05-24 16:02:18.528][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:18.529][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-05-24 16:02:18.531][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:18.532][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-05-24 16:02:18.533][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:18.534][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-05-24 16:02:18.535][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-05-24 16:02:18.537][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-05-24 16:02:18.538][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:18.539][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2025-05-24 16:02:18.540][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-05-24 16:02:18.541][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2025-05-24 16:02:18.541][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2025-05-24 16:02:18.541][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2025-05-24 16:02:18.541][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2025-05-24 16:02:18.541][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2025-05-24 16:02:18.541][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2025-05-24 16:02:18.543][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:18.544][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-05-24 16:02:18.545][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-05-24 16:02:18.546][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:18.548][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:18.549][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-05-24 16:02:18.550][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:18.551][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:18.552][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-05-24 16:02:18.554][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-05-24 16:02:18.554][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-05-24 16:02:18.555][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-05-24 16:02:18.556][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-05-24 16:02:18.557][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:18.558][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:18.560][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2025-05-24 16:02:18.562][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:18.564][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2025-05-24 16:02:18.587][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:18.589][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-05-24 16:02:18.590][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:18.591][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-05-24 16:02:18.592][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:18.593][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-05-24 16:02:18.595][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-05-24 16:02:18.596][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-05-24 16:02:18.597][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:18.598][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2025-05-24 16:02:18.600][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-05-24 16:02:18.601][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-05-24 16:02:18.601][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:18.601][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:18.601][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:18.601][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:18.601][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:18.601][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:18.601][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:18.601][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:18.601][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:18.601][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2025-05-24 16:02:18.601][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:18.601][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:18.601][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:18.602][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:18.604][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-05-24 16:02:18.604][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-05-24 16:02:18.604][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-05-24 16:02:18.605][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-05-24 16:02:18.606][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:18.607][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:18.608][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-05-24 16:02:18.609][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:18.611][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:18.612][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-05-24 16:02:18.613][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-05-24 16:02:18.613][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-05-24 16:02:18.613][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-05-24 16:02:18.614][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-05-24 16:02:18.615][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-05-24 16:02:18.617][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:18.618][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-05-24 16:02:18.620][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2025-05-24 16:02:18.622][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:18.623][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2025-05-24 16:02:18.624][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:18.626][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-05-24 16:02:18.627][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:18.628][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-05-24 16:02:18.629][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:18.631][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-05-24 16:02:18.632][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-05-24 16:02:18.633][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-05-24 16:02:18.635][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:18.636][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2025-05-24 16:02:18.637][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-05-24 16:02:18.638][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2025-05-24 16:02:18.638][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-05-24 16:02:18.640][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:18.641][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:18.642][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-05-24 16:02:18.643][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:18.644][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:18.645][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-05-24 16:02:18.647][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:18.648][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:18.649][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-05-24 16:02:18.650][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-05-24 16:02:18.650][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-05-24 16:02:18.650][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-05-24 16:02:18.651][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-05-24 16:02:18.653][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-05-24 16:02:18.654][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:18.655][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-05-24 16:02:18.663][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2025-05-24 16:02:18.665][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-05-24 16:02:18.667][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-05-24 16:02:18.668][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2025-05-24 16:02:18.670][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-05-24 16:02:18.672][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2025-05-24 16:02:18.693][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2025-05-24 16:02:18.694][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2025-05-24 16:02:18.698][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2025-05-24 16:02:18.702][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2025-05-24 16:02:18.706][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-05-24 16:02:18.707][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-05-24 16:02:18.709][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2025-05-24 16:02:18.710][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-05-24 16:02:18.711][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-05-24 16:02:18.712][bdb$getFactory()$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.INFO [2025-05-24 16:02:18.722][biodb::testThat]
biodb.INFO [2025-05-24 16:02:18.723][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-05-24 16:02:18.725][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:02:18.726][biodb::testThat]
biodb.TRACE[2025-05-24 16:02:18.730][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS12227.1-content.html".
biodb.DEBUG[2025-05-24 16:02:18.732][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-05-24 16:02:18.736][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-05-24 16:02:18.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:18.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:18.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:18.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:18.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:18.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:18.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:02:18.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:18.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:18.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:18.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:18.807][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:18.824][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:18.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:18.826][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:18.870][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:18.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:18.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:18.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:18.875][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:18.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:18.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:18.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:18.880][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:18.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:18.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:18.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:18.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:18.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:18.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:18.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:18.890][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:18.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:18.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:18.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:18.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:18.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:18.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:18.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:18.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:18.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:18.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:18.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:18.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:18.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:18.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:18.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:18.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:18.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:18.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:18.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:18.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:18.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:18.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:18.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:18.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:18.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:18.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:18.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:18.967][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS12227.1.
biodb.TRACE[2025-05-24 16:02:18.970][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:18.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:18.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:18.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:18.975][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:18.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:18.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:18.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.014][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:02:19.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:02:19.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.019][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:02:19.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:02:19.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.023][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-05-24 16:02:19.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-05-24 16:02:19.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.028][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-05-24 16:02:19.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-05-24 16:02:19.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:19.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:19.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.111][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:19.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:19.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.116][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:19.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:19.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.121][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:19.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:19.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.148][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.150][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.152][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.168][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:19.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:19.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.173][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:19.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:19.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.182][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:19.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:19.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.187][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:19.189][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:19.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.191][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.192][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:19.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:19.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.206][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:19.208][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:19.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.210][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.216][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.217][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.219][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.242][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS43240.1-content.html".
biodb.DEBUG[2025-05-24 16:02:19.289][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-05-24 16:02:19.290][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-05-24 16:02:19.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:19.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:19.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:19.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:19.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:19.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:19.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:02:19.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.350][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:19.351][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:19.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.354][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.355][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:19.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:19.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.360][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:19.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:19.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:19.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:19.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:19.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:19.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:19.408][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS43240.1.
biodb.TRACE[2025-05-24 16:02:19.435][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:19.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:19.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.440][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:19.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:19.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.445][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:02:19.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:02:19.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.450][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:02:19.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:02:19.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.455][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-05-24 16:02:19.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-05-24 16:02:19.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.459][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-05-24 16:02:19.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-05-24 16:02:19.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.475][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:19.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:19.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.517][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:19.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:19.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.525][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:19.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:19.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.530][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:19.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:19.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.569][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.571][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.573][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.588][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:19.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:19.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.593][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:19.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:19.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.598][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:19.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:19.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.603][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:19.604][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:19.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.606][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.607][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:19.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:19.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.622][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:19.623][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:19.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.625][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:19.631][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:19.632][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:19.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:19.635][ef$get] fields variable is a list.
biodb.INFO [2025-05-24 16:02:19.645][biodb::testThat]
biodb.INFO [2025-05-24 16:02:19.646][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-05-24 16:02:19.647][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:02:19.648][biodb::testThat]
biodb.DEBUG[2025-05-24 16:02:19.651][private$loadEntries] Creating entries from ids [2]: "CCDS12227.1, CCDS43240.1".
biodb.DEBUG[2025-05-24 16:02:19.657][conn$getEntryContent] Get NCBI CCDS entry content(s) for 2 id(s)...
biodb.TRACE[2025-05-24 16:02:19.662][cch$loadFileContent] Trying to load 2 files from cache: [2]: "CCDS12227.1, CCDS43240.1".
biodb.TRACE[2025-05-24 16:02:19.663][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-05-24 16:02:19.665][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-05-24 16:02:19.666][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-05-24 16:02:19.667][conn$getEntryContent] 2 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-05-24 16:02:19.668][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-05-24 16:02:19.670][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-05-24 16:02:19.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:19.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:19.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:19.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:19.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:19.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:19.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:19.689][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2025-05-24 16:02:19.721][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-05-24 16:02:19.722][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-05-24 16:02:19.724][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.TRACE[2025-05-24 16:02:21.796][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1).
biodb.DEBUG[2025-05-24 16:02:23.372][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-05-24 16:02:23.375][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.content"
biodb.TRACE[2025-05-24 16:02:23.406][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.request"
biodb.DEBUG[2025-05-24 16:02:23.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:23.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:23.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:23.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:23.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:23.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:23.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:23.450][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1".
biodb.DEBUG[2025-05-24 16:02:23.472][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-05-24 16:02:23.473][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-05-24 16:02:23.494][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1".
biodb.TRACE[2025-05-24 16:02:24.623][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1).
biodb.DEBUG[2025-05-24 16:02:25.888][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-05-24 16:02:25.891][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/a052eb5467fd4c16ef9a5120d12cce8e.content"
biodb.TRACE[2025-05-24 16:02:25.896][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/a052eb5467fd4c16ef9a5120d12cce8e.request"
biodb.TRACE[2025-05-24 16:02:25.899][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS12227.1.html, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html"
biodb.DEBUG[2025-05-24 16:02:25.902][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-05-24 16:02:25.907][self$createEntryFromContent] Creating NCBI CCDS entries from 2 content(s).
biodb.DEBUG[2025-05-24 16:02:25.912][self$createEntryFromContent] Parsing 2 NCBI CCDS entries.
biodb.DEBUG[2025-05-24 16:02:25.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:25.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:25.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:25.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:25.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:25.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:25.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:02:25.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:25.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:25.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:25.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:25.957][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:25.958][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:25.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:25.961][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:25.962][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:25.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:25.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:25.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:25.968][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:25.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:25.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:25.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:25.973][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:25.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:25.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:25.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:25.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:25.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:25.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:25.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:25.983][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:25.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:25.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:25.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:25.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:25.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:25.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:25.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:25.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:25.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:25.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:25.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:25.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:25.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:26.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:26.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:26.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:26.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:26.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:26.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:26.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:26.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:02:26.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:26.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:26.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:26.035][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:26.036][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:26.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.039][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:26.040][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:26.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:26.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:26.045][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:26.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:26.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:26.050][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:26.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:26.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:26.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:26.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:26.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:26.060][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:26.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:26.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:26.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:26.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:26.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:26.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:26.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:26.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:26.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:26.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:26.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:26.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:26.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:26.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:26.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:26.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:26.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:26.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:26.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:26.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:26.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:26.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:26.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:26.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:26.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:26.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:26.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:26.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:26.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:26.115][self$createEntryFromContent] Accession numbers: CCDS12227.1, CCDS43240.1.
biodb.TRACE[2025-05-24 16:02:26.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-05-24 16:02:26.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-05-24 16:02:26.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:26.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-05-24 16:02:26.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-05-24 16:02:26.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:26.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-05-24 16:02:26.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-05-24 16:02:26.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:26.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-05-24 16:02:26.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-05-24 16:02:26.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:26.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-05-24 16:02:26.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-05-24 16:02:26.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:26.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-05-24 16:02:26.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-05-24 16:02:26.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-05-24 16:02:26.160][biodb::testThat]
biodb.INFO [2025-05-24 16:02:26.161][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-05-24 16:02:26.162][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:02:26.164][biodb::testThat]
biodb.INFO [2025-05-24 16:02:26.171][biodb::testThat]
biodb.INFO [2025-05-24 16:02:26.172][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-05-24 16:02:26.173][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:02:26.175][biodb::testThat]
biodb.WARN [2025-05-24 16:02:26.200][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2025-05-24 16:02:26.229][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2025-05-24 16:02:26.240][biodb::testThat]
biodb.INFO [2025-05-24 16:02:26.242][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-05-24 16:02:26.243][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:02:26.244][biodb::testThat]
biodb.TRACE[2025-05-24 16:02:26.275][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:26.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:26.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:26.280][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:26.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:26.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:26.285][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:02:26.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:02:26.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:26.290][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:02:26.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:02:26.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:26.295][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-05-24 16:02:26.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-05-24 16:02:26.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:26.300][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-05-24 16:02:26.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-05-24 16:02:26.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:26.317][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:26.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:26.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:26.322][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:26.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:26.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:26.327][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:02:26.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:02:26.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:26.332][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:02:26.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:02:26.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:26.341][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-05-24 16:02:26.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-05-24 16:02:26.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:26.346][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-05-24 16:02:26.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-05-24 16:02:26.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:26.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-05-24 16:02:26.357][biodb::testThat]
biodb.INFO [2025-05-24 16:02:26.359][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-05-24 16:02:26.360][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:02:26.361][biodb::testThat]
biodb.INFO [2025-05-24 16:02:26.372][biodb::testThat]
biodb.INFO [2025-05-24 16:02:26.374][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-05-24 16:02:26.375][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:02:26.376][biodb::testThat]
biodb.INFO [2025-05-24 16:02:26.386][biodb::testThat]
biodb.INFO [2025-05-24 16:02:26.387][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-05-24 16:02:26.388][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:02:26.389][biodb::testThat]
biodb.DEBUG[2025-05-24 16:02:26.394][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2025-05-24 16:02:27.553][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1.
biodb.INFO [2025-05-24 16:02:28.675][biodb::testThat]
biodb.INFO [2025-05-24 16:02:28.676][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-05-24 16:02:28.678][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:02:28.679][biodb::testThat]
biodb.INFO [2025-05-24 16:02:28.687][bdb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-05-24 16:02:28.688][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2025-05-24 16:02:28.689][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2025-05-24 16:02:28.690][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-05-24 16:02:28.691][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:28.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:28.694][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:28.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:28.696][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:28.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-05-24 16:02:28.710][biodb::testContext]
biodb.INFO [2025-05-24 16:02:28.711][biodb::testContext] ********************************************************************************
biodb.INFO [2025-05-24 16:02:28.712][biodb::testContext] Test context - Gene long tests
biodb.INFO [2025-05-24 16:02:28.713][biodb::testContext] ********************************************************************************
biodb.INFO [2025-05-24 16:02:28.714][biodb::testContext]
biodb.INFO [2025-05-24 16:02:28.717][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-05-24 16:02:28.719][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-05-24 16:02:28.723][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-05-24 16:02:28.724][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-05-24 16:02:28.725][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-05-24 16:02:28.726][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:28.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:28.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:28.730][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-05-24 16:02:28.731][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-05-24 16:02:28.732][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:28.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:28.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:28.735][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-05-24 16:02:28.737][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-05-24 16:02:28.738][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:28.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:28.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:28.749][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-05-24 16:02:28.750][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-05-24 16:02:28.751][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-05-24 16:02:28.752][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:28.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:28.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:28.756][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-05-24 16:02:28.757][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-05-24 16:02:28.758][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-05-24 16:02:28.759][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:28.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:28.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:28.762][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-05-24 16:02:28.763][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-05-24 16:02:28.764][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:28.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:28.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:28.768][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-05-24 16:02:28.769][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-05-24 16:02:28.770][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-05-24 16:02:28.771][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:28.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:28.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:28.775][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-05-24 16:02:28.776][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-05-24 16:02:28.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:28.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:28.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:28.780][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-05-24 16:02:28.782][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-05-24 16:02:28.783][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-05-24 16:02:28.784][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:28.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:28.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:28.787][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-05-24 16:02:28.788][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-05-24 16:02:28.790][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-05-24 16:02:28.791][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-05-24 16:02:28.792][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-05-24 16:02:28.793][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-05-24 16:02:28.794][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:28.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:28.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:28.798][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-05-24 16:02:28.799][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-05-24 16:02:28.800][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:28.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:28.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:28.803][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-05-24 16:02:28.805][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-05-24 16:02:28.806][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:28.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:28.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:28.809][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-05-24 16:02:28.810][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-05-24 16:02:28.811][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:28.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:28.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:28.815][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-05-24 16:02:28.816][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-05-24 16:02:28.817][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:28.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:28.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:28.820][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-05-24 16:02:28.821][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-05-24 16:02:28.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:28.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:28.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:28.826][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-05-24 16:02:28.827][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-05-24 16:02:28.837][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-05-24 16:02:28.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:28.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:28.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:28.842][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-05-24 16:02:28.843][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-05-24 16:02:28.844][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-05-24 16:02:28.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:28.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:28.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:28.849][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-05-24 16:02:28.851][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:28.852][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-05-24 16:02:28.853][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:28.854][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-05-24 16:02:28.856][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:28.857][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-05-24 16:02:28.858][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:28.859][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-05-24 16:02:28.860][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-05-24 16:02:28.862][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-05-24 16:02:28.863][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:28.864][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-05-24 16:02:28.865][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-05-24 16:02:28.866][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:28.868][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:28.869][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-05-24 16:02:28.869][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-05-24 16:02:28.869][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-05-24 16:02:28.869][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-05-24 16:02:28.869][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-05-24 16:02:28.870][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-05-24 16:02:28.871][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:28.872][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:28.873][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-05-24 16:02:28.875][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:28.876][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:28.877][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-05-24 16:02:28.878][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:28.879][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-05-24 16:02:28.884][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-05-24 16:02:28.885][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:28.886][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:28.888][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-05-24 16:02:28.890][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:28.891][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-05-24 16:02:28.892][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:28.893][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-05-24 16:02:28.895][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:28.896][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-05-24 16:02:28.897][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:28.898][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-05-24 16:02:28.899][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-05-24 16:02:28.900][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-05-24 16:02:28.902][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:28.903][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-05-24 16:02:28.904][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-05-24 16:02:28.905][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:28.906][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:28.908][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-05-24 16:02:28.908][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-05-24 16:02:28.908][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-05-24 16:02:28.908][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-05-24 16:02:28.908][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-05-24 16:02:28.909][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-05-24 16:02:28.910][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:28.911][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:28.912][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-05-24 16:02:28.913][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:28.914][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:28.916][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-05-24 16:02:28.917][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:28.918][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-05-24 16:02:28.919][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-05-24 16:02:28.920][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:28.921][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:28.923][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-05-24 16:02:28.925][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:28.926][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-05-24 16:02:28.927][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:28.928][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-05-24 16:02:28.930][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:28.931][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-05-24 16:02:28.932][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:28.933][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-05-24 16:02:28.934][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-05-24 16:02:28.936][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-05-24 16:02:28.937][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:28.938][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-05-24 16:02:28.939][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-05-24 16:02:28.940][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:28.941][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:28.943][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:28.944][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-05-24 16:02:28.945][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:28.946][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:28.947][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-05-24 16:02:28.948][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:28.949][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:28.951][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-05-24 16:02:28.952][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:28.953][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-05-24 16:02:28.954][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-05-24 16:02:28.955][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:28.956][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:28.958][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-05-24 16:02:28.960][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:28.961][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-05-24 16:02:28.962][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:28.963][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-05-24 16:02:28.965][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:28.966][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-05-24 16:02:28.967][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:28.968][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-05-24 16:02:28.969][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-05-24 16:02:28.970][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-05-24 16:02:28.972][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:28.973][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-05-24 16:02:28.974][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-05-24 16:02:28.975][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:28.976][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:28.978][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:28.979][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-05-24 16:02:28.980][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:28.981][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:28.982][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-05-24 16:02:28.983][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:28.984][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:28.986][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-05-24 16:02:28.987][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:28.988][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-05-24 16:02:28.989][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-05-24 16:02:28.990][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:28.991][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:28.993][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-05-24 16:02:28.994][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:28.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:28.996][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:28.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:28.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:28.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.002][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.011][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.022][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.027][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.038][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.043][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.049][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.054][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.059][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.065][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.070][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.076][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.087][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.092][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-05-24 16:02:29.094][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-05-24 16:02:29.096][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-05-24 16:02:29.097][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-05-24 16:02:29.099][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-05-24 16:02:29.101][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-05-24 16:02:29.102][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-05-24 16:02:29.104][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-05-24 16:02:29.106][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-05-24 16:02:29.108][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-05-24 16:02:29.109][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-05-24 16:02:29.111][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-05-24 16:02:29.113][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-05-24 16:02:29.114][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-05-24 16:02:29.116][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-05-24 16:02:29.118][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-05-24 16:02:29.120][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-05-24 16:02:29.121][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-05-24 16:02:29.123][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-05-24 16:02:29.125][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-05-24 16:02:29.126][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-05-24 16:02:29.128][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-05-24 16:02:29.130][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-05-24 16:02:29.131][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-05-24 16:02:29.138][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-05-24 16:02:29.140][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-05-24 16:02:29.142][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-05-24 16:02:29.144][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-05-24 16:02:29.146][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-05-24 16:02:29.147][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-05-24 16:02:29.149][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-05-24 16:02:29.151][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-05-24 16:02:29.152][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-05-24 16:02:29.154][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-05-24 16:02:29.156][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-05-24 16:02:29.157][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-05-24 16:02:29.159][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-05-24 16:02:29.161][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-05-24 16:02:29.162][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-05-24 16:02:29.164][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-05-24 16:02:29.166][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-05-24 16:02:29.167][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-05-24 16:02:29.169][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-05-24 16:02:29.171][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-05-24 16:02:29.173][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-05-24 16:02:29.174][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-05-24 16:02:29.176][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-05-24 16:02:29.178][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-05-24 16:02:29.179][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-05-24 16:02:29.181][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-05-24 16:02:29.183][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-05-24 16:02:29.184][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-05-24 16:02:29.186][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-05-24 16:02:29.188][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-05-24 16:02:29.190][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-05-24 16:02:29.191][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-05-24 16:02:29.193][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-05-24 16:02:29.195][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-05-24 16:02:29.197][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-05-24 16:02:29.198][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-05-24 16:02:29.200][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-05-24 16:02:29.202][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-05-24 16:02:29.203][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-05-24 16:02:29.205][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-05-24 16:02:29.207][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-05-24 16:02:29.208][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-05-24 16:02:29.210][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-05-24 16:02:29.212][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-05-24 16:02:29.213][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-05-24 16:02:29.215][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-05-24 16:02:29.217][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-05-24 16:02:29.218][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-05-24 16:02:29.220][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-05-24 16:02:29.222][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-05-24 16:02:29.224][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-05-24 16:02:29.225][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-05-24 16:02:29.227][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-05-24 16:02:29.229][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-05-24 16:02:29.231][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-05-24 16:02:29.232][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-05-24 16:02:29.234][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-05-24 16:02:29.236][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-05-24 16:02:29.238][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-05-24 16:02:29.239][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-05-24 16:02:29.241][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-05-24 16:02:29.242][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-05-24 16:02:29.244][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.246][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:29.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:29.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:29.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:29.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.267][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:29.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:29.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.275][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:29.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:29.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.282][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:29.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:29.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.290][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:29.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:29.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.298][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:29.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:29.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.305][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:29.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:29.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.313][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:29.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:29.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.321][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:29.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:29.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.328][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:29.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:29.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.336][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:29.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:29.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.344][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:29.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:29.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.351][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:29.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:29.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.359][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:29.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:29.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.366][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:29.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:29.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.374][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:29.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:29.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:29.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:29.383][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2025-05-24 16:02:29.385][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2025-05-24 16:02:29.387][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:29.392][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2025-05-24 16:02:29.394][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:29.395][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-05-24 16:02:29.396][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:29.398][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-05-24 16:02:29.399][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:29.400][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-05-24 16:02:29.401][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2025-05-24 16:02:29.402][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-05-24 16:02:29.404][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:29.405][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2025-05-24 16:02:29.406][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-05-24 16:02:29.407][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2025-05-24 16:02:29.407][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2025-05-24 16:02:29.409][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:29.410][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:29.411][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-05-24 16:02:29.412][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:29.413][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:29.414][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-05-24 16:02:29.416][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:29.417][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:29.418][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-05-24 16:02:29.419][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-05-24 16:02:29.419][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2025-05-24 16:02:29.420][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-05-24 16:02:29.421][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-05-24 16:02:29.422][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:29.424][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:29.425][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2025-05-24 16:02:29.428][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:29.429][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2025-05-24 16:02:29.430][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:29.431][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-05-24 16:02:29.433][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:29.434][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-05-24 16:02:29.435][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:29.436][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-05-24 16:02:29.437][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-05-24 16:02:29.439][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-05-24 16:02:29.440][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:29.441][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2025-05-24 16:02:29.442][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-05-24 16:02:29.444][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2025-05-24 16:02:29.444][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2025-05-24 16:02:29.444][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2025-05-24 16:02:29.444][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2025-05-24 16:02:29.444][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2025-05-24 16:02:29.444][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2025-05-24 16:02:29.445][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:29.446][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-05-24 16:02:29.447][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-05-24 16:02:29.449][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:29.450][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:29.451][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-05-24 16:02:29.452][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:29.453][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:29.454][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-05-24 16:02:29.455][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-05-24 16:02:29.455][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-05-24 16:02:29.457][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-05-24 16:02:29.458][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-05-24 16:02:29.459][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:29.460][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:29.462][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2025-05-24 16:02:29.464][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:29.465][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2025-05-24 16:02:29.466][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:29.468][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-05-24 16:02:29.469][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:29.470][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-05-24 16:02:29.471][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:29.473][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-05-24 16:02:29.474][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-05-24 16:02:29.475][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-05-24 16:02:29.476][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:29.477][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2025-05-24 16:02:29.479][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-05-24 16:02:29.480][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-05-24 16:02:29.480][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:29.480][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:29.480][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:29.480][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:29.480][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:29.480][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:29.480][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:29.480][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:29.480][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:29.480][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2025-05-24 16:02:29.480][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:29.480][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:29.480][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:29.482][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:29.483][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-05-24 16:02:29.483][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-05-24 16:02:29.483][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-05-24 16:02:29.484][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-05-24 16:02:29.485][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:29.486][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:29.488][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-05-24 16:02:29.489][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:29.490][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:29.491][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-05-24 16:02:29.493][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-05-24 16:02:29.493][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-05-24 16:02:29.493][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-05-24 16:02:29.494][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-05-24 16:02:29.495][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-05-24 16:02:29.496][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:29.497][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-05-24 16:02:29.499][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2025-05-24 16:02:29.502][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:29.503][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2025-05-24 16:02:29.504][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:29.505][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-05-24 16:02:29.507][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:29.508][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-05-24 16:02:29.509][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:29.510][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-05-24 16:02:29.511][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-05-24 16:02:29.513][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-05-24 16:02:29.514][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:29.515][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2025-05-24 16:02:29.517][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-05-24 16:02:29.522][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2025-05-24 16:02:29.522][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-05-24 16:02:29.524][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:29.525][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:29.527][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-05-24 16:02:29.528][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:29.529][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:29.530][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-05-24 16:02:29.531][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:29.532][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:29.533][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-05-24 16:02:29.535][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-05-24 16:02:29.535][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-05-24 16:02:29.535][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-05-24 16:02:29.536][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-05-24 16:02:29.537][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-05-24 16:02:29.538][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:29.540][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-05-24 16:02:29.541][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2025-05-24 16:02:29.543][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-05-24 16:02:29.545][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-05-24 16:02:29.547][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2025-05-24 16:02:29.549][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-05-24 16:02:29.550][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2025-05-24 16:02:29.559][super$initialize] Initialize connector ncbi.gene.
biodb.DEBUG[2025-05-24 16:02:29.560][super$initialize] Register connector ncbi.gene with the request scheduler
biodb.DEBUG[2025-05-24 16:02:29.562][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.gene.
biodb.DEBUG[2025-05-24 16:02:29.564][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2025-05-24 16:02:29.565][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-05-24 16:02:29.566][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-05-24 16:02:29.568][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2025-05-24 16:02:29.569][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-05-24 16:02:29.571][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-05-24 16:02:29.657][biodb$getFactory()$createConn] Creating new connector ncbi.gene for database class ncbi.gene .
biodb.INFO [2025-05-24 16:02:29.662][biodb::testThat]
biodb.INFO [2025-05-24 16:02:29.663][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-05-24 16:02:29.664][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:02:29.665][biodb::testThat]
biodb.TRACE[2025-05-24 16:02:29.671][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-2833-content.xml".
biodb.DEBUG[2025-05-24 16:02:29.672][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-05-24 16:02:29.676][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-05-24 16:02:29.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:29.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:29.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:29.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:29.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:29.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:29.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:02:29.703][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:29.705][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:29.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:29.707][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:29.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:29.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:29.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:29.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:29.714][ef$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:29.715][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:29.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:29.718][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:29.720][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:29.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:29.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:29.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:29.725][ef$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:29.726][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:29.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:29.728][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:29.730][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:29.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:29.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:29.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:29.735][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:29.737][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:29.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:29.739][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:29.741][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:29.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:29.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:29.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:29.746][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:29.747][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:29.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:29.749][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:29.752][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:29.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:29.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:29.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:29.757][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:29.758][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:29.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:29.760][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:29.763][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:29.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:29.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:29.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:29.773][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:29.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:29.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:29.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:29.778][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:29.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:29.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:29.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:29.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:29.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:29.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:29.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:29.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:29.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:29.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:29.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:29.798][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:29.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:29.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:29.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:29.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:29.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:29.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:29.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:29.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:29.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:29.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:29.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:29.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:29.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:29.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:29.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:29.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:29.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:29.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:29.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:29.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:29.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:29.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:29.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:29.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:29.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:29.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:29.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:29.832][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2833.
biodb.TRACE[2025-05-24 16:02:29.835][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:29.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:29.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:29.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:29.839][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:29.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:29.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:29.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:29.844][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:29.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:29.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:29.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:29.849][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:29.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:29.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:29.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:29.854][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:29.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:29.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:29.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:29.859][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-05-24 16:02:29.953][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2025-05-24 16:02:29.955][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2025-05-24 16:02:29.956][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2025-05-24 16:02:29.979][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2025-05-24 16:02:29.980][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-05-24 16:02:29.982][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2025-05-24 16:02:29.999][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-05-24 16:02:30.000][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-05-24 16:02:30.002][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2025-05-24 16:02:30.003][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-05-24 16:02:30.005][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2025-05-24 16:02:30.006][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-05-24 16:02:30.007][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-05-24 16:02:30.026][self$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.DEBUG[2025-05-24 16:02:30.028][private$loadEntries] Creating entries from ids [1]: "CCDS14416.1".
biodb.DEBUG[2025-05-24 16:02:30.034][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-05-24 16:02:30.037][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14416.1".
biodb.TRACE[2025-05-24 16:02:30.039][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:02:30.042][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14416.1.html".
biodb.DEBUG[2025-05-24 16:02:30.043][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-05-24 16:02:30.045][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-05-24 16:02:30.046][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-05-24 16:02:30.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:30.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:30.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:30.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:30.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:30.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:30.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:02:30.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:30.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:30.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.083][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:30.084][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:30.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.086][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.088][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:30.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:30.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:30.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:30.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:30.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:30.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:30.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:30.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.108][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:30.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:30.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:30.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:30.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:30.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:30.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:30.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:30.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:30.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:30.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:30.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:30.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:30.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:30.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:30.143][self$createEntryFromContent] Accession numbers: CCDS14416.1.
biodb.TRACE[2025-05-24 16:02:30.145][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:30.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:30.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.150][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:30.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:30.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.155][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:30.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:30.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.164][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:02:30.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:02:30.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.172][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:02:30.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:02:30.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.177][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-05-24 16:02:30.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-05-24 16:02:30.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.182][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-05-24 16:02:30.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-05-24 16:02:30.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:30.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:30.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.198][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:30.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:30.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:30.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:30.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:30.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:30.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:30.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:30.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:30.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:30.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:30.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:30.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:30.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:30.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.240][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:30.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:30.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.244][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:30.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:30.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:30.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:30.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:30.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:30.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:30.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:30.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:30.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:30.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.277][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:30.278][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:30.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.280][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:30.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:30.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.302][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:30.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:30.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.307][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:30.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:30.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.311][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:30.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:30.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.316][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:30.318][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:30.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.320][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.321][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:30.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:30.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.336][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:30.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:30.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.341][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:30.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:30.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.346][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:30.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:30.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.351][ef$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:30.352][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:30.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.355][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.356][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:30.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:30.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.372][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:30.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:30.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.377][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:30.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:30.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.383][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:30.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:30.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.389][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:30.390][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:30.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.393][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.394][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:30.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:30.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.415][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:30.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:30.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.421][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:30.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:30.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.426][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:30.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:30.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.431][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:30.432][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:30.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.434][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.435][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:30.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:30.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.450][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:30.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:30.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.455][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:30.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:30.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.460][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:30.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:30.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.465][ef$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:30.466][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:30.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.469][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.470][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:30.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:30.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.485][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:30.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:30.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.490][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:02:30.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:30.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.495][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:02:30.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:30.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.500][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:30.502][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:30.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.504][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.505][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:30.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:30.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.520][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:30.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:30.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.525][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:30.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:30.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.530][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:30.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:30.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.540][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:30.541][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:30.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.543][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.545][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:30.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:30.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.559][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:30.560][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:30.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.563][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.569][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:30.570][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:30.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.573][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.579][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:30.580][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:30.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.582][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.588][ef$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:30.590][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:30.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.592][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.598][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:30.600][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:30.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.602][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.608][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:02:30.609][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:30.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.612][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.618][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:30.619][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:30.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.621][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.627][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:30.629][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:30.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.631][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.641][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3002-content.xml".
biodb.DEBUG[2025-05-24 16:02:30.642][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-05-24 16:02:30.644][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-05-24 16:02:30.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:30.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:30.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:30.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:30.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:30.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:30.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:02:30.675][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:30.677][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:30.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.679][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:30.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:30.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.686][ef$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:30.688][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:30.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.690][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.692][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:30.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:30.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.697][ef$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:30.699][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:30.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.701][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.703][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:30.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:30.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.708][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:30.709][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:30.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.712][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.714][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:30.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:30.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.719][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:30.720][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:30.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.723][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.725][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:30.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:30.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.730][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:30.732][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:30.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.734][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.737][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:30.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:30.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:30.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:30.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.750][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:30.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:30.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.755][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:30.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:30.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:30.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:30.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.765][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:30.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:30.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:30.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:30.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:30.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:30.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:30.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:30.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:30.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:30.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:30.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:30.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:30.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:30.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:30.804][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3002.
biodb.TRACE[2025-05-24 16:02:30.806][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:30.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:30.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.811][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:30.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:30.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.816][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:30.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:30.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.821][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:30.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:30.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:30.825][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:30.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:30.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:30.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:30.830][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-05-24 16:02:30.831][private$loadEntries] Creating entries from ids [1]: "CCDS9633.1".
biodb.DEBUG[2025-05-24 16:02:30.894][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-05-24 16:02:30.921][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS9633.1".
biodb.TRACE[2025-05-24 16:02:30.922][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-05-24 16:02:30.924][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-05-24 16:02:30.925][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-05-24 16:02:30.926][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-05-24 16:02:30.928][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-05-24 16:02:30.929][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-05-24 16:02:30.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:30.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:30.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:30.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:30.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:30.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:30.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:30.946][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.DEBUG[2025-05-24 16:02:30.949][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-05-24 16:02:30.951][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-05-24 16:02:30.952][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.TRACE[2025-05-24 16:02:32.074][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1).
biodb.DEBUG[2025-05-24 16:02:33.405][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-05-24 16:02:33.407][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.content"
biodb.TRACE[2025-05-24 16:02:33.428][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.request"
biodb.TRACE[2025-05-24 16:02:33.431][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS9633.1.html"
biodb.DEBUG[2025-05-24 16:02:33.434][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-05-24 16:02:33.435][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-05-24 16:02:33.437][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-05-24 16:02:33.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:33.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:33.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:33.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:33.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:33.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:33.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:02:33.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:33.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:33.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.482][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:33.484][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:33.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.486][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.488][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:33.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:33.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:33.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:33.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.498][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:33.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:33.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:33.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:33.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:33.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:33.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:33.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:33.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:33.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:33.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:33.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:33.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:33.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:33.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:33.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:33.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:33.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:33.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:33.543][self$createEntryFromContent] Accession numbers: CCDS9633.1.
biodb.TRACE[2025-05-24 16:02:33.556][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:33.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:33.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.561][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:33.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:33.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.566][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:33.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:33.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.571][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:02:33.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:02:33.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.576][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:02:33.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:02:33.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.581][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-05-24 16:02:33.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-05-24 16:02:33.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.586][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-05-24 16:02:33.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-05-24 16:02:33.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:33.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:33.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.606][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:33.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:33.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:33.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:33.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:33.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:33.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:33.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:33.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:33.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:33.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:33.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:33.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:33.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:33.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.649][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:33.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:33.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.654][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:33.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:33.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.659][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:33.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:33.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:33.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:33.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:33.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:33.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:33.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:33.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.687][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:33.688][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:33.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.690][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:33.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:33.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.707][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:33.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:33.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.712][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:33.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:33.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.722][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:33.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:33.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.727][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:33.728][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:33.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.731][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.732][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:33.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:33.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.746][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:33.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:33.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.751][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:33.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:33.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.756][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:33.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:33.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.761][ef$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:33.762][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:33.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.764][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.766][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:33.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:33.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.780][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:33.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:33.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.785][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:33.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:33.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.790][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:33.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:33.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.795][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:33.796][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:33.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.798][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.799][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:33.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:33.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.814][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:33.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:33.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.819][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:33.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:33.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.824][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:33.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:33.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.829][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:33.830][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:33.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.837][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.838][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:33.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:33.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.853][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:33.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:33.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.858][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:33.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:33.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.862][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:33.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:33.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.867][ef$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:33.869][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:33.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.871][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.872][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:33.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:33.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.886][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:33.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:33.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.891][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:02:33.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:33.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.896][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:02:33.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:33.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.901][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:33.902][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:33.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.905][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.906][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:33.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:33.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.921][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:33.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:33.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.926][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:33.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:33.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.931][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:33.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:33.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.936][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:33.938][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:33.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.940][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.941][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:33.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:33.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.961][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:33.962][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:33.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.964][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.971][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:33.972][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:33.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.974][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.980][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:33.982][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:33.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.984][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:33.990][ef$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:33.992][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:33.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:33.994][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.001][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:34.002][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:34.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.005][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.011][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:02:34.012][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:34.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.015][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.021][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:34.022][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:34.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.024][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.030][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:34.032][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:34.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.034][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.046][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3627-content.xml".
biodb.DEBUG[2025-05-24 16:02:34.048][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-05-24 16:02:34.049][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-05-24 16:02:34.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:34.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:34.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:34.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:34.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:34.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:34.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:02:34.088][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:34.089][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:34.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.092][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:34.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:34.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.099][ef$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:34.100][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:34.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.103][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.105][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:34.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:34.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.115][ef$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:34.116][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:34.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.119][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.121][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:34.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:34.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.126][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:34.127][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:34.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.130][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.132][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:34.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:34.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.137][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:34.138][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:34.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.140][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.143][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:34.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:34.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.148][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:34.149][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:34.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.152][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.155][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:34.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:34.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.163][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:34.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:34.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.168][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:34.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:34.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.173][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:34.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:34.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:34.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:34.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:34.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:34.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:34.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:34.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:34.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:34.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:34.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:34.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:34.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:34.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:34.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:34.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:34.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:34.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:34.219][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3627.
biodb.TRACE[2025-05-24 16:02:34.221][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:34.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:34.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.226][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:34.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:34.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.378][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:34.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:34.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:34.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:34.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.387][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:34.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:34.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:34.392][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-05-24 16:02:34.394][private$loadEntries] Creating entries from ids [1]: "CCDS43240.1".
biodb.DEBUG[2025-05-24 16:02:34.395][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-05-24 16:02:34.397][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS43240.1".
biodb.TRACE[2025-05-24 16:02:34.398][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:02:34.400][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2025-05-24 16:02:34.401][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-05-24 16:02:34.403][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-05-24 16:02:34.404][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-05-24 16:02:34.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:34.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:34.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:34.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:34.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:34.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:34.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:02:34.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:34.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:34.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.438][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:34.439][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:34.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.442][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.444][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:34.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:34.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.449][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:34.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:34.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.454][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:34.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:34.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:34.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:34.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.463][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:34.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:34.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:34.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:34.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:34.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:34.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:34.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:34.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:34.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:34.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:34.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:34.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:34.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:34.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:34.498][self$createEntryFromContent] Accession numbers: CCDS43240.1.
biodb.TRACE[2025-05-24 16:02:34.499][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:34.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:34.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.504][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:34.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:34.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.508][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:34.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:34.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.514][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:02:34.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:02:34.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.518][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:02:34.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:02:34.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.523][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-05-24 16:02:34.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-05-24 16:02:34.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.529][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-05-24 16:02:34.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-05-24 16:02:34.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:34.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:34.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.548][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:34.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:34.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:34.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:34.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:34.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:34.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:34.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:34.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:34.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:34.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:34.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:34.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:34.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:34.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:34.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:34.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.605][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:34.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:34.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:34.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:34.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:34.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:34.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:34.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:34.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:34.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:34.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.643][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:34.645][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:34.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.647][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:34.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:34.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.666][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:34.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:34.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.672][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:34.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:34.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.678][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:34.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:34.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.684][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:34.686][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:34.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.689][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.690][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:34.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:34.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.708][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:34.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:34.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.714][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:34.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:34.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.720][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:34.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:34.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.727][ef$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:34.728][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:34.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.731][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.733][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:34.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:34.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.751][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:34.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:34.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.757][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:34.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:34.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.763][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:34.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:34.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.769][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:34.770][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:34.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.773][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.775][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:34.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:34.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.792][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:34.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:34.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.799][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:34.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:34.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:34.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:34.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.811][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:34.812][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:34.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.815][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:34.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:34.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.835][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:34.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:34.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.841][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:34.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:34.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.847][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:34.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:34.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.853][ef$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:34.854][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:34.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.857][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.859][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:34.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:34.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.876][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:34.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:34.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.882][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:02:34.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:34.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.887][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:02:34.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:34.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.893][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:34.895][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:34.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.903][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.904][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:34.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:34.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.919][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:34.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:34.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.924][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:34.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:34.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.928][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:34.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:34.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.934][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:34.936][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:34.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.940][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.942][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:34.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:34.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.957][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:34.958][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:34.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.961][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.967][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:34.968][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:34.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.970][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.976][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:34.977][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:34.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.980][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.986][ef$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:34.987][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:34.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.989][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:34.995][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:34.997][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:34.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:34.999][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:35.005][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:02:35.006][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:35.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:35.009][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:35.015][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:35.016][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:35.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:35.018][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:35.024][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:35.026][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:35.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:35.028][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:35.038][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-4316-content.xml".
biodb.DEBUG[2025-05-24 16:02:35.040][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-05-24 16:02:35.041][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-05-24 16:02:35.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:35.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:35.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:35.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:35.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:35.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:35.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:02:35.070][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:35.071][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:35.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:35.073][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:35.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:35.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:35.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:35.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:35.080][ef$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:35.082][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:35.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:35.084][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:35.086][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:35.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:35.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:35.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:35.091][ef$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:35.092][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:35.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:35.094][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:35.096][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:35.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:35.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:35.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:35.101][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:35.103][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:35.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:35.105][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:35.107][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:35.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:35.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:35.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:35.112][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:35.113][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:35.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:35.116][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:35.118][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:35.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:35.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:35.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:35.123][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:35.124][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:35.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:35.126][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:35.129][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:35.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:35.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:35.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:35.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:35.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:35.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:35.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:35.141][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:35.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:35.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:35.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:35.146][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:35.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:35.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:35.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:35.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:35.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:35.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:35.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:35.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:35.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:35.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:35.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:35.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:35.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:35.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:35.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:35.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:35.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:35.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:35.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:35.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:35.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:35.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:35.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:35.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:35.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:35.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:35.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:35.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:35.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:35.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:35.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:35.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:35.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:35.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:35.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:35.190][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 4316.
biodb.TRACE[2025-05-24 16:02:35.192][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:35.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:35.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:35.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:35.197][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:35.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:35.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:35.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:35.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:35.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:35.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:35.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:35.207][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:35.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:35.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:35.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:35.212][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:35.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:35.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:35.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:35.217][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-05-24 16:02:35.218][private$loadEntries] Creating entries from ids [1]: "CCDS8317.1".
biodb.DEBUG[2025-05-24 16:02:35.219][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-05-24 16:02:35.221][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS8317.1".
biodb.TRACE[2025-05-24 16:02:35.223][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-05-24 16:02:35.224][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-05-24 16:02:35.225][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-05-24 16:02:35.227][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-05-24 16:02:35.228][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-05-24 16:02:35.229][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-05-24 16:02:35.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:35.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:35.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:35.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:35.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:35.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:35.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:35.261][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.DEBUG[2025-05-24 16:02:35.264][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-05-24 16:02:35.265][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-05-24 16:02:35.267][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.TRACE[2025-05-24 16:02:36.458][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1).
biodb.DEBUG[2025-05-24 16:02:37.844][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-05-24 16:02:37.847][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.content"
biodb.TRACE[2025-05-24 16:02:37.852][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.request"
biodb.TRACE[2025-05-24 16:02:37.855][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS8317.1.html"
biodb.DEBUG[2025-05-24 16:02:37.858][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-05-24 16:02:37.859][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-05-24 16:02:37.860][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-05-24 16:02:37.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:37.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:37.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:37.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:37.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:37.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:37.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:02:37.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:37.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:37.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:37.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:37.900][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:37.901][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:37.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:37.903][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:37.905][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:37.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:37.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:37.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:37.910][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:37.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:37.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:37.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:37.915][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:37.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:37.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:37.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:37.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:37.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:37.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:37.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:37.925][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:37.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:37.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:37.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:37.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:37.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:37.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:37.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:37.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:37.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:37.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:37.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:37.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:37.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:37.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:37.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:37.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:37.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:37.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:37.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:37.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:37.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:37.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:37.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:37.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:37.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:37.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:37.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:37.974][self$createEntryFromContent] Accession numbers: CCDS8317.1.
biodb.TRACE[2025-05-24 16:02:37.976][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:37.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:37.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:37.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:37.980][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:37.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:37.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:37.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:37.985][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:37.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:37.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:37.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:37.990][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:02:37.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:02:37.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:37.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:37.996][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:02:37.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:02:37.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:37.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.001][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-05-24 16:02:38.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-05-24 16:02:38.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.005][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-05-24 16:02:38.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-05-24 16:02:38.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:38.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:38.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.061][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:38.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:38.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:38.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:38.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:38.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:38.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:38.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:38.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:38.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:38.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:38.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:38.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:38.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:38.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.102][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:38.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:38.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:38.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:38.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.111][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:38.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:38.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:38.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:38.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:38.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:38.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:38.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:38.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.138][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:38.139][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:38.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.141][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:38.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:38.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.157][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:38.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:38.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.162][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:38.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:38.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.167][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:38.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:38.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.172][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:38.174][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:38.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.176][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.177][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:38.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:38.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.192][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:38.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:38.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.197][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:38.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:38.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.201][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:38.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:38.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.206][ef$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:38.208][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:38.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.210][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.211][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:38.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:38.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.226][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:38.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:38.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.231][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:38.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:38.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.236][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:38.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:38.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.240][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:38.242][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:38.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.244][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.245][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:38.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:38.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.260][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:38.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:38.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.265][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:38.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:38.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.269][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:38.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:38.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.274][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:38.276][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:38.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.278][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.279][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:38.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:38.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.294][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:38.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:38.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.299][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:38.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:38.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.303][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:38.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:38.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.308][ef$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:38.310][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:38.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.312][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.313][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:38.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:38.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.328][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:38.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:38.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.333][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:02:38.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:38.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.337][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:02:38.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:38.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.342][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:38.344][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:38.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.346][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.347][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:38.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:38.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.362][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:38.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:38.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.367][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:38.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:38.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.372][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:38.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:38.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.376][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:38.378][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:38.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.380][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.381][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:38.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:38.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.396][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:38.397][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:38.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.399][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.405][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:38.407][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:38.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.409][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.415][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:38.416][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:38.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.419][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.424][ef$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:38.426][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:38.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.428][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.434][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:38.436][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:38.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.438][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.444][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:02:38.445][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:38.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.447][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.454][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:38.455][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:38.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.457][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.468][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:38.470][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:38.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.472][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.487][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-50943-content.xml".
biodb.DEBUG[2025-05-24 16:02:38.488][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-05-24 16:02:38.490][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-05-24 16:02:38.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:38.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:38.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:38.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:38.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:38.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:38.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:02:38.538][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:38.539][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:38.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.541][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:38.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:38.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.549][ef$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:38.550][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:38.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.552][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.555][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:38.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:38.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.560][ef$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:38.561][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:38.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.563][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.566][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:38.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:38.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.571][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:38.572][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:38.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.574][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.577][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:38.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:38.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.582][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:38.583][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:38.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.586][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.588][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:38.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:38.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.593][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:38.595][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:38.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.597][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.602][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:38.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:38.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.615][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:38.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:38.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.620][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:38.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:38.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.624][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:38.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:38.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:38.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:38.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:38.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:38.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:38.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:38.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:38.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:38.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:38.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:38.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:38.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:38.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:38.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:38.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:38.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:38.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:38.667][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 50943.
biodb.TRACE[2025-05-24 16:02:38.669][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:38.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:38.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.674][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:38.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:38.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.679][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:38.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:38.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.684][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:38.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:38.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:38.688][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:38.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:38.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:38.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:38.693][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-05-24 16:02:38.694][private$loadEntries] Creating entries from ids [1]: "CCDS14323.1".
biodb.DEBUG[2025-05-24 16:02:38.696][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-05-24 16:02:38.697][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14323.1".
biodb.TRACE[2025-05-24 16:02:38.699][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-05-24 16:02:38.700][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-05-24 16:02:38.702][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-05-24 16:02:38.703][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-05-24 16:02:38.704][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-05-24 16:02:38.705][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-05-24 16:02:38.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:38.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:38.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:38.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:38.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:38.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:38.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:38.721][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.DEBUG[2025-05-24 16:02:38.725][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-05-24 16:02:38.726][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-05-24 16:02:38.727][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.TRACE[2025-05-24 16:02:39.946][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1).
biodb.DEBUG[2025-05-24 16:02:41.403][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-05-24 16:02:41.406][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.content"
biodb.TRACE[2025-05-24 16:02:41.449][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.request"
biodb.TRACE[2025-05-24 16:02:41.452][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14323.1.html"
biodb.DEBUG[2025-05-24 16:02:41.455][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-05-24 16:02:41.456][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-05-24 16:02:41.458][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-05-24 16:02:41.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:41.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:41.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:41.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:41.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:41.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:41.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:02:41.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:41.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:41.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.503][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:41.504][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:41.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.507][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.509][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:41.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:41.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.514][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:41.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:41.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.519][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:41.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:41.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:41.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:41.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:41.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:41.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:41.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:41.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:41.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:41.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:41.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:41.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:41.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:41.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:41.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:41.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:41.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:41.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:41.563][self$createEntryFromContent] Accession numbers: CCDS14323.1.
biodb.TRACE[2025-05-24 16:02:41.564][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:41.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:41.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.569][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:41.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:41.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.574][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:41.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:41.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.579][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:02:41.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:02:41.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.584][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:02:41.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:02:41.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.589][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-05-24 16:02:41.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-05-24 16:02:41.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.594][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-05-24 16:02:41.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-05-24 16:02:41.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:41.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:41.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.610][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:41.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:41.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:41.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:41.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:41.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:41.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:41.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:41.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:41.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:41.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:41.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:41.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:41.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:41.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.652][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:41.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:41.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.657][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:41.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:41.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.662][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:41.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:41.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:41.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:41.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:41.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:41.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:41.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:41.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.689][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:41.708][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:41.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.711][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:41.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:41.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.727][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:41.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:41.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.732][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:41.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:41.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.737][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:41.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:41.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.741][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:41.743][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:41.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.745][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.746][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:41.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:41.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.761][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:41.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:41.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.766][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:41.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:41.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.771][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:41.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:41.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.777][ef$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:41.778][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:41.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.780][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.782][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:41.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:41.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.797][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:41.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:41.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.803][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:41.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:41.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.808][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:41.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:41.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.813][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:41.814][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:41.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.816][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.817][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:41.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:41.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.832][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:41.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:41.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.837][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:41.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:41.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.842][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:41.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:41.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.847][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:41.848][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:41.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.851][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:41.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:41.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.866][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:41.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:41.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.871][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:41.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:41.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.876][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:41.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:41.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.881][ef$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:41.882][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:41.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.885][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.886][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:41.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:41.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.900][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:41.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:41.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.905][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:02:41.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:41.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.910][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:02:41.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:41.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.915][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:41.916][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:41.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.919][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.920][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:41.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:41.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.934][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:41.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:41.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.939][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:41.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:41.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.944][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:41.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:41.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.949][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:41.950][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:41.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.953][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.954][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:41.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:41.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.968][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:41.970][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:41.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.972][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.978][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:41.979][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:41.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.982][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.988][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:41.989][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:41.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:41.991][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:41.997][ef$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:41.999][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:42.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.001][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:42.007][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:42.009][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:42.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.011][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:42.018][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:02:42.019][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:42.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.021][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:42.027][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:42.029][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:42.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.031][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:42.037][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:42.039][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:42.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.041][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:42.050][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-5551-content.xml".
biodb.DEBUG[2025-05-24 16:02:42.051][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-05-24 16:02:42.053][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-05-24 16:02:42.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:42.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:42.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:42.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:42.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:42.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:42.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:02:42.078][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:42.079][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:42.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.081][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:42.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:42.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:42.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:42.088][ef$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:42.089][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:42.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.092][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:42.094][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:42.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:42.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:42.099][ef$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:42.100][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:42.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.102][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:42.104][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:42.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:42.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:42.109][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:42.110][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:42.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.113][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:42.114][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:42.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:42.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:42.119][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:42.121][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:42.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.123][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:42.125][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:42.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:42.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:42.130][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:42.131][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:42.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.134][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:42.136][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:42.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:42.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:42.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:42.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:42.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:42.148][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:42.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:42.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:42.153][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:42.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:42.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:42.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:42.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:42.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:42.163][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:42.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:42.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:42.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:42.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:42.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:42.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:42.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:42.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:42.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:42.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:42.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:42.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:42.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:42.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:42.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:42.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:42.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:42.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:42.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:42.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:42.203][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 5551.
biodb.TRACE[2025-05-24 16:02:42.205][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:42.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:42.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:42.210][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:42.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:42.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:42.215][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:42.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:42.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:42.220][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:42.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:42.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:42.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:42.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:42.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:42.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:42.232][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-05-24 16:02:42.233][private$loadEntries] Creating entries from ids [1]: "CCDS7305.1".
biodb.DEBUG[2025-05-24 16:02:42.235][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-05-24 16:02:42.237][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS7305.1".
biodb.TRACE[2025-05-24 16:02:42.238][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-05-24 16:02:42.240][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-05-24 16:02:42.241][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-05-24 16:02:42.242][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-05-24 16:02:42.244][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-05-24 16:02:42.245][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-05-24 16:02:42.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:42.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:42.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:42.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:42.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:42.259][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:42.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:42.262][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.DEBUG[2025-05-24 16:02:42.266][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-05-24 16:02:42.267][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-05-24 16:02:42.269][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.TRACE[2025-05-24 16:02:44.066][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1).
biodb.DEBUG[2025-05-24 16:02:45.485][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-05-24 16:02:45.487][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.content"
biodb.TRACE[2025-05-24 16:02:45.493][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.request"
biodb.TRACE[2025-05-24 16:02:45.496][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS7305.1.html"
biodb.DEBUG[2025-05-24 16:02:45.499][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-05-24 16:02:45.500][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-05-24 16:02:45.502][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-05-24 16:02:45.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:45.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:45.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:45.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:45.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:45.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:45.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:02:45.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:45.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:45.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.544][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:45.545][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:45.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.547][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.549][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:45.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:45.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.554][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:45.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:45.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:45.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:45.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:45.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:45.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:45.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:45.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:45.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:45.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:45.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:45.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:45.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:45.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:45.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:45.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:45.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:45.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:45.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:45.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:45.603][self$createEntryFromContent] Accession numbers: CCDS7305.1.
biodb.TRACE[2025-05-24 16:02:45.605][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:45.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:45.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.610][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:45.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:45.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.615][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:45.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:45.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.621][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:02:45.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:02:45.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.626][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:02:45.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:02:45.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.631][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-05-24 16:02:45.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-05-24 16:02:45.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.636][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-05-24 16:02:45.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-05-24 16:02:45.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:45.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:45.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.652][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:45.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:45.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:45.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:45.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:45.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:45.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:45.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:45.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:45.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:45.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:45.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:45.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:45.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:45.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.694][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:45.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:45.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.699][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:45.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:45.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.703][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:45.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:45.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:45.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:45.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:45.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:45.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:45.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:45.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.731][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:45.732][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:45.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.734][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:45.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:45.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.750][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:45.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:45.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.755][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:45.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:45.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.760][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:45.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:45.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.765][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:45.766][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:45.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.769][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.770][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:45.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:45.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.785][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:45.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:45.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.790][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:45.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:45.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.795][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:45.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:45.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.800][ef$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:45.802][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:45.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.804][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.805][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:45.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:45.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.820][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:45.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:45.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.825][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:45.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:45.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.830][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:45.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:45.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.835][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:45.837][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:45.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.839][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.840][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:45.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:45.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.855][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:45.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:45.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.860][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:45.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:45.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.870][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:45.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:45.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.881][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:45.882][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:45.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.885][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.886][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:45.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:45.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.901][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:45.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:45.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.906][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:45.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:45.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.911][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:45.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:45.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.915][ef$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:45.917][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:45.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.919][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.920][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:45.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:45.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.935][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:45.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:45.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.940][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:02:45.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:45.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.945][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:02:45.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:45.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.950][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:45.951][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:45.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.954][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.955][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:45.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:45.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.970][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:45.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:45.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.975][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:45.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:45.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.980][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:45.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:45.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.985][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:45.986][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:45.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.988][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:45.990][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:45.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:45.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:45.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.005][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:46.006][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:46.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.008][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.015][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:46.017][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:46.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.019][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.025][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:46.027][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:46.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.029][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.036][ef$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:46.037][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:46.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.040][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.046][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:46.048][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:46.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.050][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.057][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:02:46.058][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:46.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.060][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.067][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:46.068][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:46.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.070][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.077][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:46.078][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:46.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.081][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.089][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-916-content.xml".
biodb.DEBUG[2025-05-24 16:02:46.091][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-05-24 16:02:46.092][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-05-24 16:02:46.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:46.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:46.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:46.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:46.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:46.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:46.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:02:46.117][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:46.118][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:46.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.121][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:46.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:46.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.127][ef$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:46.129][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:46.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.131][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.133][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:46.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:46.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.138][ef$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:46.139][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:46.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.142][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.143][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:46.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:46.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.148][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:46.150][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:46.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.152][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.154][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:46.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:46.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.159][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:46.160][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:46.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.162][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.164][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:46.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:46.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.169][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:46.171][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:46.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.173][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.175][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:46.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:46.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.182][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:46.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:46.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.187][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:46.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:46.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.192][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:46.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:46.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:46.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:46.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:46.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:46.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:46.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:46.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:46.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:46.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:46.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:46.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:46.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:46.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:46.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:46.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:46.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:46.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:46.236][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 916.
biodb.TRACE[2025-05-24 16:02:46.239][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:46.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:46.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.244][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:46.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:46.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:46.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:46.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.253][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:46.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:46.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:46.258][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:46.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:46.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:46.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:46.263][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-05-24 16:02:46.264][private$loadEntries] Creating entries from ids [1]: "CCDS31685.1".
biodb.DEBUG[2025-05-24 16:02:46.266][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-05-24 16:02:46.268][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS31685.1".
biodb.TRACE[2025-05-24 16:02:46.269][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-05-24 16:02:46.270][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-05-24 16:02:46.272][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-05-24 16:02:46.273][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-05-24 16:02:46.274][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-05-24 16:02:46.275][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-05-24 16:02:46.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:46.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:46.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:46.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:46.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:46.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:46.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:46.292][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.DEBUG[2025-05-24 16:02:46.296][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-05-24 16:02:46.297][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-05-24 16:02:46.299][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.TRACE[2025-05-24 16:02:47.603][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1).
biodb.DEBUG[2025-05-24 16:02:48.762][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-05-24 16:02:48.764][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.content"
biodb.TRACE[2025-05-24 16:02:48.769][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.request"
biodb.TRACE[2025-05-24 16:02:48.773][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS31685.1.html"
biodb.DEBUG[2025-05-24 16:02:48.775][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-05-24 16:02:48.776][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-05-24 16:02:48.780][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-05-24 16:02:48.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:48.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:48.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:48.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:48.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:48.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:48.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:02:48.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:48.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:48.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:48.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:48.828][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:48.829][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:48.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:48.832][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:48.833][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:48.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:48.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:48.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:48.838][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:48.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:48.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:48.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:48.843][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:48.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:48.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:48.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:48.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:48.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:48.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:48.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:48.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:48.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:48.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:48.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:48.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:48.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:48.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:48.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:48.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:48.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:48.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:48.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:48.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:48.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:48.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:48.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:48.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:48.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:48.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:48.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:48.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:48.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:48.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:48.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:48.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:48.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:48.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:48.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:48.886][self$createEntryFromContent] Accession numbers: CCDS31685.1.
biodb.TRACE[2025-05-24 16:02:48.887][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:48.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:48.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:48.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:48.893][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:48.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:48.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:48.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:48.898][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:48.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:48.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:48.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:48.903][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:02:48.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:02:48.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:48.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:48.908][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:02:48.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:02:48.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:48.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:48.913][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-05-24 16:02:48.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-05-24 16:02:48.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:48.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:48.918][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-05-24 16:02:48.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-05-24 16:02:48.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:48.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:48.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:48.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:48.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:48.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:48.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:48.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:48.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:48.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:48.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:48.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:48.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:48.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:48.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:48.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:48.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:48.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:48.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:48.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:48.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:48.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:48.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:48.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:48.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:48.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:48.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:48.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:48.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:48.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:48.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:48.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:48.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:48.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:48.978][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:48.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:48.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:48.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:48.983][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:48.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:48.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:48.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:48.987][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:48.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:48.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:48.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.015][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.017][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.019][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.035][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:49.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:49.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.041][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:49.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:49.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.046][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:49.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:49.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.051][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:49.052][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:49.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.055][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.056][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:49.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:49.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.071][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:49.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:49.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.077][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:49.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:49.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.082][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:49.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:49.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.087][ef$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:49.088][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:49.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.090][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.092][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:49.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:49.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.106][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:49.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:49.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.111][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:49.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:49.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.116][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:49.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:49.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.121][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:49.122][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:49.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.124][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.125][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:49.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:49.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.140][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:49.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:49.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.145][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:49.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:49.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.149][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:49.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:49.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.154][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:49.156][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:49.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.158][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.160][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:49.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:49.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.175][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:49.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:49.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.180][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:49.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:49.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.185][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:49.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:49.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.190][ef$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:49.192][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:49.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.194][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.195][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:49.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:49.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:02:49.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:49.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.215][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:02:49.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:49.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.220][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:02:49.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:49.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.225][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:02:49.226][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:49.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.229][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.230][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:02:49.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:49.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.244][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:49.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:49.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.249][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:49.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:49.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.254][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:49.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:49.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.259][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:49.260][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:49.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.263][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.264][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-05-24 16:02:49.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:49.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.289][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:49.290][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:49.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.292][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.298][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:49.300][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:49.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.302][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.308][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.309][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.313][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.319][ef$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:49.321][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:49.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.323][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.329][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:49.330][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:49.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.332][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.338][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:02:49.340][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:49.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.342][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.348][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:49.350][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:49.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.352][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.358][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:49.359][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:49.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.361][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.368][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-9606-content.xml".
biodb.DEBUG[2025-05-24 16:02:49.369][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-05-24 16:02:49.371][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-05-24 16:02:49.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:49.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:49.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:49.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:49.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:49.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:49.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:02:49.387][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.388][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.390][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.397][ef$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:49.398][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:49.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.400][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.402][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:49.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:49.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.407][ef$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:49.408][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:49.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.410][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.412][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:49.413][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:49.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.415][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.417][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:49.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:49.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.422][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:49.423][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:49.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.425][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.427][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:49.428][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:49.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.430][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.432][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:49.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:49.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.437][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:49.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:49.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:49.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:49.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:49.482][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 9606.
biodb.TRACE[2025-05-24 16:02:49.484][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:49.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:49.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.489][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:49.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:49.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:49.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:49.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.499][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:02:49.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:02:49.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.504][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:02:49.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:02:49.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.509][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-05-24 16:02:49.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-05-24 16:02:49.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.514][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-05-24 16:02:49.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-05-24 16:02:49.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.530][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:49.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:49.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:49.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:49.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.577][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:49.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:49.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:49.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:49.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.610][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.611][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.613][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.629][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:49.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:49.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.635][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:49.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:49.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.640][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:49.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:49.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.645][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:49.646][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:49.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.648][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.650][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:49.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:49.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.665][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:49.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:49.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.670][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:49.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:49.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.675][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:49.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:49.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.680][ef$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:49.681][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:49.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.684][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.685][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:49.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:49.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.701][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.702][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.705][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.711][ef$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:49.713][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:49.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.715][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.722][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:49.723][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:49.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.726][ef$get] fields variable is a list.
biodb.INFO [2025-05-24 16:02:49.736][biodb::testThat]
biodb.INFO [2025-05-24 16:02:49.737][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-05-24 16:02:49.738][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:02:49.739][biodb::testThat]
biodb.DEBUG[2025-05-24 16:02:49.742][private$loadEntries] Creating entries from ids [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.DEBUG[2025-05-24 16:02:49.743][conn$getEntryContent] Get NCBI Gene entry content(s) for 8 id(s)...
biodb.TRACE[2025-05-24 16:02:49.745][cch$loadFileContent] Trying to load 8 files from cache: [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.TRACE[2025-05-24 16:02:49.747][cch$loadFileContent] file.exist = [8]: "TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE".
biodb.TRACE[2025-05-24 16:02:49.791][loadFileContents] Loaded 8 files from cache: [8]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/2833.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3002.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3627.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/4316.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/50943.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/5551.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/916.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/9606.xml".
biodb.DEBUG[2025-05-24 16:02:49.797][conn$getEntryContent] 8 NCBI Gene entry content(s) loaded from cache.
biodb.DEBUG[2025-05-24 16:02:49.799][self$createEntryFromContent] Creating NCBI Gene entries from 8 content(s).
biodb.DEBUG[2025-05-24 16:02:49.800][self$createEntryFromContent] Parsing 8 NCBI Gene entries.
biodb.DEBUG[2025-05-24 16:02:49.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:49.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:49.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:49.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:49.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:49.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:49.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:02:49.828][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.830][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.832][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.839][ef$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:49.840][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:49.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.842][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.844][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:49.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:49.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.849][ef$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:49.850][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:49.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.853][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.854][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:49.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:49.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.859][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:49.861][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:49.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.863][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.865][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:49.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:49.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.870][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:49.871][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:49.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.874][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.876][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:49.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:49.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.881][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:49.883][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:49.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.885][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.888][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:49.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:49.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:49.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:49.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.903][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:49.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:49.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.907][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:49.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:49.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.917][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:49.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:49.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:49.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:49.938][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:49.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:49.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:49.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:49.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:49.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:02:49.962][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.963][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.965][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:49.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:49.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.972][ef$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:49.974][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:49.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.976][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.978][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:49.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:49.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.983][ef$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:49.984][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:49.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.986][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.988][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:49.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:49.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.993][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:49.995][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:49.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:49.997][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:49.999][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:50.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:50.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.004][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:50.005][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:50.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.008][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.010][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:50.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:50.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.015][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:50.016][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:50.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.018][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.021][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:50.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:50.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.030][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:50.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:50.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.035][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.050][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:50.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:50.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:50.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:50.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:50.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:50.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:50.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:02:50.104][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.105][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.107][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.115][ef$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:50.116][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:50.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.118][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.121][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:50.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:50.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.126][ef$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:50.127][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:50.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.129][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.132][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:50.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:50.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.137][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:50.138][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:50.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.140][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.143][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:50.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:50.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.148][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:50.149][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:50.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.151][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.154][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:50.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:50.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.159][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:50.160][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:50.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.163][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.167][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:50.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:50.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:50.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:50.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.180][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.185][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.195][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:50.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:50.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:50.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:50.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:50.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:50.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:50.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:02:50.245][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.246][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.248][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.255][ef$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:50.257][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:50.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.259][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.261][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:50.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:50.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.266][ef$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:50.267][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:50.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.270][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.272][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:50.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:50.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.278][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:50.279][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:50.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.281][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.283][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:50.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:50.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.288][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:50.290][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:50.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.292][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.294][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:50.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:50.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.299][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:50.301][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:50.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.303][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.306][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:50.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:50.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.313][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:50.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:50.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.318][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.326][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:50.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:50.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:50.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:50.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:50.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:50.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:50.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:02:50.419][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.420][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.422][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.430][ef$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:50.432][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:50.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.434][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.437][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:50.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:50.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.442][ef$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:50.443][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:50.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.445][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.448][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:50.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:50.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.453][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:50.455][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:50.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.457][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.460][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:50.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:50.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.465][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:50.466][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:50.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.469][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.472][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:50.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:50.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.477][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:50.479][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:50.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.481][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.487][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:50.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:50.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:50.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:50.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.519][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:50.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:50.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:50.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:50.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:50.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:50.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:50.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:02:50.564][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.566][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.568][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.575][ef$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:50.576][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:50.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.579][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.581][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:50.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:50.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.586][ef$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:50.587][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:50.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.589][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.591][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:50.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:50.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.597][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:50.598][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:50.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.601][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.603][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:50.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:50.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.608][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:50.609][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:50.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.612][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.614][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:50.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:50.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.619][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:50.621][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:50.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.623][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.627][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:50.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:50.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:50.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:50.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.639][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.644][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.654][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:50.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:50.675][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:50.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:50.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:50.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:50.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:50.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:02:50.698][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.699][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.701][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.708][ef$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:50.710][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:50.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.712][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.714][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:50.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:50.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.719][ef$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:50.720][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:50.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.722][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.724][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:50.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:50.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.729][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:50.730][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:50.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.733][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.735][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:50.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:50.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.740][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:50.741][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:50.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.743][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.745][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:50.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:50.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.750][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:50.752][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:50.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.754][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.756][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:50.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:50.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.763][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:50.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:50.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.768][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.773][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:50.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:50.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:50.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:50.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:50.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:50.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:50.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:02:50.829][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.830][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.866][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.872][ef$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:50.873][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:50.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.876][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.890][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-05-24 16:02:50.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-05-24 16:02:50.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.904][ef$get] Asked field names are: location.
biodb.TRACE[2025-05-24 16:02:50.905][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-05-24 16:02:50.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.907][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.909][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:50.910][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:50.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.930][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.931][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-05-24 16:02:50.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-05-24 16:02:50.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.941][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-05-24 16:02:50.942][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:50.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.945][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.946][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:50.947][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-05-24 16:02:50.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.950][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.951][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:50.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:50.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:50.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:50.997][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-05-24 16:02:50.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:51.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:51.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:51.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:51.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:51.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:51.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:51.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:51.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:51.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:51.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:51.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:51.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:51.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:51.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:51.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:51.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:51.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:51.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:51.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:51.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:51.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:51.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:51.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:51.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:51.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:51.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:51.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:51.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:51.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:51.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:51.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:51.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:51.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:51.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:51.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:51.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:51.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:51.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:51.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:51.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:51.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:51.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:51.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:51.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:51.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:51.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:51.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:51.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:51.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:51.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:51.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:51.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:51.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:51.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:51.134][self$createEntryFromContent] Accession numbers: 2833, 3002, 3627, 4316, 50943, 5551, 916, 9606.
biodb.TRACE[2025-05-24 16:02:51.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-05-24 16:02:51.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-05-24 16:02:51.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-05-24 16:02:51.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-05-24 16:02:51.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-05-24 16:02:51.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-05-24 16:02:51.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-05-24 16:02:51.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-05-24 16:02:51.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-05-24 16:02:51.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-05-24 16:02:51.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-05-24 16:02:51.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-05-24 16:02:51.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-05-24 16:02:51.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-05-24 16:02:51.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-05-24 16:02:51.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-05-24 16:02:51.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-05-24 16:02:51.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-05-24 16:02:51.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-05-24 16:02:51.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-05-24 16:02:51.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-05-24 16:02:51.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-05-24 16:02:51.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-05-24 16:02:51.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-05-24 16:02:51.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-05-24 16:02:51.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-05-24 16:02:51.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-05-24 16:02:51.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-05-24 16:02:51.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-05-24 16:02:51.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-05-24 16:02:51.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-05-24 16:02:51.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-05-24 16:02:51.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-05-24 16:02:51.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-05-24 16:02:51.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-05-24 16:02:51.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-05-24 16:02:51.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-05-24 16:02:51.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-05-24 16:02:51.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-05-24 16:02:51.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-05-24 16:02:51.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-05-24 16:02:51.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-05-24 16:02:51.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-05-24 16:02:51.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-05-24 16:02:51.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-05-24 16:02:51.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-05-24 16:02:51.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-05-24 16:02:51.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-05-24 16:02:51.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-05-24 16:02:51.302][biodb::testThat]
biodb.INFO [2025-05-24 16:02:51.303][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-05-24 16:02:51.305][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:02:51.306][biodb::testThat]
biodb.TRACE[2025-05-24 16:02:51.310][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:02:51.311][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:51.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.313][ef$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:51.315][function(conn, opt)] Testing searchForEntries() with entry "2833" and field "name".
biodb.TRACE[2025-05-24 16:02:51.331][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:02:51.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:51.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.336][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:02:51.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:51.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.340][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:02:51.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:51.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:51.348][function(conn, opt)] With value "GPR9".
biodb.DEBUG[2025-05-24 16:02:51.356][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2025-05-24 16:02:51.360][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:02:51.361][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2025-05-24 16:02:51.363][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:02:51.365][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.DEBUG[2025-05-24 16:02:51.367][function(conn, opt)] With found IDs [1]: "2833".
biodb.INFO [2025-05-24 16:02:51.386][biodb::testThat]
biodb.INFO [2025-05-24 16:02:51.387][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-05-24 16:02:51.388][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:02:51.390][biodb::testThat]
biodb.TRACE[2025-05-24 16:02:51.403][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:02:51.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:51.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.408][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:02:51.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:51.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.413][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:02:51.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:51.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:51.456][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2025-05-24 16:02:51.459][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:02:51.461][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2025-05-24 16:02:51.462][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:02:51.464][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.INFO [2025-05-24 16:02:51.483][biodb::testThat]
biodb.INFO [2025-05-24 16:02:51.484][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-05-24 16:02:51.485][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:02:51.486][biodb::testThat]
biodb.TRACE[2025-05-24 16:02:51.498][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:51.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:51.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.503][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:51.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:51.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:51.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:51.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:51.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:51.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.517][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:51.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:51.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:51.522][private$computeField] Compute value for field "aa.seq".
biodb.TRACE[2025-05-24 16:02:51.523][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:51.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:51.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.528][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:51.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:51.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.533][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:51.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:51.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.538][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:02:51.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:02:51.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.543][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:02:51.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:02:51.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.547][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-05-24 16:02:51.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-05-24 16:02:51.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.552][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-05-24 16:02:51.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-05-24 16:02:51.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.558][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:51.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:51.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.563][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:51.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:51.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.568][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:02:51.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:02:51.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.572][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:02:51.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:02:51.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.577][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-05-24 16:02:51.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-05-24 16:02:51.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:51.582][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-05-24 16:02:51.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-05-24 16:02:51.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:51.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-05-24 16:02:51.593][biodb::testThat]
biodb.INFO [2025-05-24 16:02:51.595][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-05-24 16:02:51.596][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:02:51.597][biodb::testThat]
biodb.INFO [2025-05-24 16:02:51.611][biodb::testThat]
biodb.INFO [2025-05-24 16:02:51.612][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-05-24 16:02:51.613][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:02:51.614][biodb::testThat]
biodb.INFO [2025-05-24 16:02:51.623][biodb::testThat]
biodb.INFO [2025-05-24 16:02:51.624][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-05-24 16:02:51.626][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:02:51.627][biodb::testThat]
biodb.DEBUG[2025-05-24 16:02:51.631][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/gene?term=2833".
biodb.DEBUG[2025-05-24 16:02:55.155][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/gene?term=2833.
biodb.INFO [2025-05-24 16:02:58.547][biodb::testThat]
biodb.INFO [2025-05-24 16:02:58.549][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-05-24 16:02:58.550][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:02:58.551][biodb::testThat]
biodb.INFO [2025-05-24 16:02:58.559][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-05-24 16:02:58.560][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.gene from the request scheduler
biodb.INFO [2025-05-24 16:02:58.562][self$deleteConn] Connector "ncbi.gene" deleted.
biodb.DEBUG[2025-05-24 16:02:58.563][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2025-05-24 16:02:58.573][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2025-05-24 16:02:58.574][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-05-24 16:02:58.575][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:58.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:58.577][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:58.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:58.580][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-05-24 16:02:58.585][biodb::testContext]
biodb.INFO [2025-05-24 16:02:58.586][biodb::testContext] ********************************************************************************
biodb.INFO [2025-05-24 16:02:58.587][biodb::testContext] Test context - Pubchem comp long tests
biodb.INFO [2025-05-24 16:02:58.588][biodb::testContext] ********************************************************************************
biodb.INFO [2025-05-24 16:02:58.590][biodb::testContext]
biodb.INFO [2025-05-24 16:02:58.592][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-05-24 16:02:58.594][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-05-24 16:02:58.598][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-05-24 16:02:58.599][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-05-24 16:02:58.601][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-05-24 16:02:58.602][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.605][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-05-24 16:02:58.606][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-05-24 16:02:58.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.611][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-05-24 16:02:58.612][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-05-24 16:02:58.613][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.616][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-05-24 16:02:58.618][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-05-24 16:02:58.619][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-05-24 16:02:58.620][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.623][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-05-24 16:02:58.624][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-05-24 16:02:58.626][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-05-24 16:02:58.627][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.630][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-05-24 16:02:58.631][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-05-24 16:02:58.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.636][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-05-24 16:02:58.637][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-05-24 16:02:58.638][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-05-24 16:02:58.639][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.643][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-05-24 16:02:58.644][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-05-24 16:02:58.645][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.648][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-05-24 16:02:58.649][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-05-24 16:02:58.651][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-05-24 16:02:58.652][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.655][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-05-24 16:02:58.656][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-05-24 16:02:58.657][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-05-24 16:02:58.659][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-05-24 16:02:58.660][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-05-24 16:02:58.661][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-05-24 16:02:58.662][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.665][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-05-24 16:02:58.667][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-05-24 16:02:58.668][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.671][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-05-24 16:02:58.672][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-05-24 16:02:58.673][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.677][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-05-24 16:02:58.678][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-05-24 16:02:58.679][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.682][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-05-24 16:02:58.684][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-05-24 16:02:58.685][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.688][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-05-24 16:02:58.689][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-05-24 16:02:58.690][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.694][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-05-24 16:02:58.695][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-05-24 16:02:58.705][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-05-24 16:02:58.707][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.710][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-05-24 16:02:58.712][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-05-24 16:02:58.713][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-05-24 16:02:58.714][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.718][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-05-24 16:02:58.720][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:58.722][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-05-24 16:02:58.723][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:58.724][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-05-24 16:02:58.725][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:58.727][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-05-24 16:02:58.728][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:58.729][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-05-24 16:02:58.730][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-05-24 16:02:58.732][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-05-24 16:02:58.733][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:58.734][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-05-24 16:02:58.735][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-05-24 16:02:58.736][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:58.738][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:58.739][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-05-24 16:02:58.739][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-05-24 16:02:58.739][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-05-24 16:02:58.739][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-05-24 16:02:58.739][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-05-24 16:02:58.740][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-05-24 16:02:58.741][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:58.743][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:58.744][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-05-24 16:02:58.745][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:58.746][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:58.747][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-05-24 16:02:58.748][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:58.750][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-05-24 16:02:58.751][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-05-24 16:02:58.752][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:58.753][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:58.755][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-05-24 16:02:58.757][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:58.758][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-05-24 16:02:58.759][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:58.760][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-05-24 16:02:58.762][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:58.763][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-05-24 16:02:58.764][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:58.765][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-05-24 16:02:58.767][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-05-24 16:02:58.768][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-05-24 16:02:58.769][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:58.770][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-05-24 16:02:58.771][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-05-24 16:02:58.773][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:58.774][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:58.775][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-05-24 16:02:58.775][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-05-24 16:02:58.775][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-05-24 16:02:58.775][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-05-24 16:02:58.775][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-05-24 16:02:58.777][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-05-24 16:02:58.778][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:58.779][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:58.780][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-05-24 16:02:58.781][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:58.783][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:58.784][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-05-24 16:02:58.785][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:58.786][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-05-24 16:02:58.787][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-05-24 16:02:58.788][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:58.790][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:58.791][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-05-24 16:02:58.801][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:58.802][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-05-24 16:02:58.803][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:58.805][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-05-24 16:02:58.806][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:58.807][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-05-24 16:02:58.808][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:58.809][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-05-24 16:02:58.811][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-05-24 16:02:58.812][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-05-24 16:02:58.813][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:58.814][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-05-24 16:02:58.815][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-05-24 16:02:58.817][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:58.818][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:58.819][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:58.820][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-05-24 16:02:58.822][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:58.823][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:58.824][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-05-24 16:02:58.825][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:58.826][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:58.828][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-05-24 16:02:58.829][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:58.830][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-05-24 16:02:58.831][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-05-24 16:02:58.832][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:58.833][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:58.835][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-05-24 16:02:58.837][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:58.838][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-05-24 16:02:58.839][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:58.841][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-05-24 16:02:58.842][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:58.843][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-05-24 16:02:58.844][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:58.846][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-05-24 16:02:58.847][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-05-24 16:02:58.848][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-05-24 16:02:58.849][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:58.851][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-05-24 16:02:58.852][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-05-24 16:02:58.853][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:58.854][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:58.856][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:58.857][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-05-24 16:02:58.858][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:58.859][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:58.860][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-05-24 16:02:58.862][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:58.863][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:58.864][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-05-24 16:02:58.865][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:58.866][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-05-24 16:02:58.867][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-05-24 16:02:58.868][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:58.870][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:58.871][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-05-24 16:02:58.872][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.874][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:58.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:58.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.881][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:58.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:58.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.887][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:58.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:58.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:58.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:58.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.898][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:58.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:58.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.903][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:58.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:58.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:58.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:58.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.914][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:58.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:58.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.919][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:58.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:58.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.925][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:58.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:58.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.931][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:58.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:58.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.936][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:58.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:58.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.942][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:58.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:58.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.947][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:58.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:58.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.953][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:58.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:58.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.958][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:58.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:58.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.964][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:58.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:58.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:58.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:58.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:58.970][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-05-24 16:02:58.971][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-05-24 16:02:58.973][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-05-24 16:02:58.975][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-05-24 16:02:58.976][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-05-24 16:02:58.978][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-05-24 16:02:58.980][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-05-24 16:02:58.982][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-05-24 16:02:58.983][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-05-24 16:02:58.985][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-05-24 16:02:58.987][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-05-24 16:02:58.988][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-05-24 16:02:58.990][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-05-24 16:02:58.992][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-05-24 16:02:58.993][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-05-24 16:02:58.995][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-05-24 16:02:58.997][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-05-24 16:02:58.998][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-05-24 16:02:59.000][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-05-24 16:02:59.002][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-05-24 16:02:59.003][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-05-24 16:02:59.005][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-05-24 16:02:59.007][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-05-24 16:02:59.009][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-05-24 16:02:59.010][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-05-24 16:02:59.012][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-05-24 16:02:59.014][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-05-24 16:02:59.015][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-05-24 16:02:59.017][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-05-24 16:02:59.019][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-05-24 16:02:59.020][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-05-24 16:02:59.022][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-05-24 16:02:59.024][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-05-24 16:02:59.026][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-05-24 16:02:59.027][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-05-24 16:02:59.029][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-05-24 16:02:59.031][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-05-24 16:02:59.032][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-05-24 16:02:59.034][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-05-24 16:02:59.036][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-05-24 16:02:59.037][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-05-24 16:02:59.039][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-05-24 16:02:59.041][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-05-24 16:02:59.043][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-05-24 16:02:59.044][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-05-24 16:02:59.046][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-05-24 16:02:59.048][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-05-24 16:02:59.050][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-05-24 16:02:59.051][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-05-24 16:02:59.053][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-05-24 16:02:59.055][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-05-24 16:02:59.057][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-05-24 16:02:59.058][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-05-24 16:02:59.060][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-05-24 16:02:59.062][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-05-24 16:02:59.064][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-05-24 16:02:59.066][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-05-24 16:02:59.067][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-05-24 16:02:59.069][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-05-24 16:02:59.071][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-05-24 16:02:59.073][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-05-24 16:02:59.075][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-05-24 16:02:59.076][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-05-24 16:02:59.078][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-05-24 16:02:59.080][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-05-24 16:02:59.082][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-05-24 16:02:59.084][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-05-24 16:02:59.086][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-05-24 16:02:59.087][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-05-24 16:02:59.089][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-05-24 16:02:59.091][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-05-24 16:02:59.093][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-05-24 16:02:59.094][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-05-24 16:02:59.096][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-05-24 16:02:59.098][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-05-24 16:02:59.100][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-05-24 16:02:59.102][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-05-24 16:02:59.103][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-05-24 16:02:59.105][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-05-24 16:02:59.107][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-05-24 16:02:59.109][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-05-24 16:02:59.111][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-05-24 16:02:59.112][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-05-24 16:02:59.114][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-05-24 16:02:59.116][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-05-24 16:02:59.118][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-05-24 16:02:59.119][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:59.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:59.121][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:59.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:59.123][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:59.124][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:59.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:59.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:59.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:59.128][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:59.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:59.131][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:59.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:59.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:59.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:59.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:59.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:59.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:59.138][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:59.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:59.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:59.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:59.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:59.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:59.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:59.146][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:59.147][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:59.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:59.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:59.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:59.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:59.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:59.154][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:59.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:59.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:59.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:59.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:59.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:59.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:59.162][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:59.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:59.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:59.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:59.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:59.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:59.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:59.169][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:59.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:59.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:59.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:59.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:59.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:59.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:59.177][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:59.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:59.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:59.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:59.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:59.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:59.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:59.185][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:59.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:59.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:59.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:59.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:59.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:59.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:59.193][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:59.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:59.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:59.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:59.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:59.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:59.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:59.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:59.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:59.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:59.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:59.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:59.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:59.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:59.208][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:59.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:59.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:59.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:59.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:59.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:59.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:59.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:59.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:59.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:59.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:59.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:59.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:59.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:59.223][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:59.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:59.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:59.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:59.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:59.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:59.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:59.236][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:59.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:59.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:59.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:59.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:59.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:59.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:59.243][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:59.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:59.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:59.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:59.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:59.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:59.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:59.251][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:02:59.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:59.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:59.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:59.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:59.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:59.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:02:59.260][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2025-05-24 16:02:59.262][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2025-05-24 16:02:59.264][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:59.266][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2025-05-24 16:02:59.267][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:59.268][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-05-24 16:02:59.269][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:59.270][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-05-24 16:02:59.272][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:59.273][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-05-24 16:02:59.274][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2025-05-24 16:02:59.275][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-05-24 16:02:59.276][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:59.278][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2025-05-24 16:02:59.279][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-05-24 16:02:59.280][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2025-05-24 16:02:59.280][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2025-05-24 16:02:59.281][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:59.282][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:59.284][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-05-24 16:02:59.285][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:59.286][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:59.287][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-05-24 16:02:59.288][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:59.289][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:59.291][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-05-24 16:02:59.292][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-05-24 16:02:59.292][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2025-05-24 16:02:59.293][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-05-24 16:02:59.294][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-05-24 16:02:59.295][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:59.296][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:59.298][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2025-05-24 16:02:59.300][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:59.301][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2025-05-24 16:02:59.303][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:59.304][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-05-24 16:02:59.305][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:59.306][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-05-24 16:02:59.307][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:59.309][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-05-24 16:02:59.310][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-05-24 16:02:59.311][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-05-24 16:02:59.312][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:59.313][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2025-05-24 16:02:59.315][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-05-24 16:02:59.316][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2025-05-24 16:02:59.316][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2025-05-24 16:02:59.316][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2025-05-24 16:02:59.316][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2025-05-24 16:02:59.316][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2025-05-24 16:02:59.316][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2025-05-24 16:02:59.317][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:59.318][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-05-24 16:02:59.320][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-05-24 16:02:59.321][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:59.322][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:59.323][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-05-24 16:02:59.324][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:59.325][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:59.326][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-05-24 16:02:59.328][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-05-24 16:02:59.328][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-05-24 16:02:59.329][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-05-24 16:02:59.330][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-05-24 16:02:59.331][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:59.332][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:59.334][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2025-05-24 16:02:59.336][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:59.337][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2025-05-24 16:02:59.338][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:59.340][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-05-24 16:02:59.341][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:59.342][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-05-24 16:02:59.343][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:59.344][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-05-24 16:02:59.346][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-05-24 16:02:59.347][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-05-24 16:02:59.348][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:59.349][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2025-05-24 16:02:59.351][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-05-24 16:02:59.352][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-05-24 16:02:59.352][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:59.352][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:59.352][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:59.352][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:59.352][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:59.352][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:59.352][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:59.352][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:59.352][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:59.352][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2025-05-24 16:02:59.352][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:59.352][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:59.352][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:02:59.353][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:59.355][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-05-24 16:02:59.355][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-05-24 16:02:59.355][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-05-24 16:02:59.356][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-05-24 16:02:59.357][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:59.358][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:59.359][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-05-24 16:02:59.360][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:59.361][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:59.363][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-05-24 16:02:59.364][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-05-24 16:02:59.364][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-05-24 16:02:59.364][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-05-24 16:02:59.365][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-05-24 16:02:59.366][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-05-24 16:02:59.367][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:59.369][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-05-24 16:02:59.370][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2025-05-24 16:02:59.372][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:59.374][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2025-05-24 16:02:59.375][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:59.376][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-05-24 16:02:59.377][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:59.379][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-05-24 16:02:59.380][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:59.381][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-05-24 16:02:59.382][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-05-24 16:02:59.383][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-05-24 16:02:59.385][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:59.386][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2025-05-24 16:02:59.387][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-05-24 16:02:59.388][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2025-05-24 16:02:59.388][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-05-24 16:02:59.390][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-05-24 16:02:59.391][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:02:59.392][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-05-24 16:02:59.393][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:59.394][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:59.395][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-05-24 16:02:59.397][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:02:59.398][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:02:59.399][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-05-24 16:02:59.400][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-05-24 16:02:59.400][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-05-24 16:02:59.400][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-05-24 16:02:59.402][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-05-24 16:02:59.403][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-05-24 16:02:59.404][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-05-24 16:02:59.405][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-05-24 16:02:59.407][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2025-05-24 16:02:59.409][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-05-24 16:02:59.410][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-05-24 16:02:59.412][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2025-05-24 16:02:59.414][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-05-24 16:02:59.416][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2025-05-24 16:02:59.424][super$initialize] Initialize connector ncbi.pubchem.comp.
biodb.DEBUG[2025-05-24 16:02:59.425][super$initialize] Register connector ncbi.pubchem.comp with the request scheduler
biodb.DEBUG[2025-05-24 16:02:59.426][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.comp.
biodb.DEBUG[2025-05-24 16:02:59.428][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2025-05-24 16:02:59.430][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-05-24 16:02:59.431][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-05-24 16:02:59.432][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2025-05-24 16:02:59.434][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-05-24 16:02:59.435][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-05-24 16:02:59.436][rule$addConnector] Connector "ncbi.pubchem.comp" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-05-24 16:02:59.442][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.comp for database class ncbi.pubchem.comp .
biodb.INFO [2025-05-24 16:02:59.447][biodb::testThat]
biodb.INFO [2025-05-24 16:02:59.448][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-05-24 16:02:59.450][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:02:59.451][biodb::testThat]
biodb.TRACE[2025-05-24 16:02:59.454][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-2-content.xml".
biodb.DEBUG[2025-05-24 16:02:59.456][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-05-24 16:02:59.459][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-05-24 16:02:59.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:02:59.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:02:59.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:02:59.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:02:59.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:02:59.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:02:59.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:02:59.478][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:59.479][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:59.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.482][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:59.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:59.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.488][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:02:59.490][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:02:59.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.492][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:02:59.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:02:59.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.498][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:02:59.500][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:02:59.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.502][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:02:59.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:02:59.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.509][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:02:59.510][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:02:59.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.512][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:02:59.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:02:59.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.519][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:02:59.520][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:02:59.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.522][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:02:59.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:02:59.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.529][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:02:59.531][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:02:59.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.533][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:02:59.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:02:59.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.539][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:02:59.541][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:02:59.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.543][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.545][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:02:59.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:02:59.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.550][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:02:59.551][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:02:59.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.553][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.555][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:02:59.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:02:59.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.560][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:02:59.561][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:02:59.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.563][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.565][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:02:59.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:02:59.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.570][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:02:59.571][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:02:59.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.573][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:02:59.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:02:59.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.580][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:02:59.581][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:02:59.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.584][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.585][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:02:59.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:02:59.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.590][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:02:59.591][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:02:59.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.594][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:02:59.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:02:59.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.601][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:02:59.602][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:02:59.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.605][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.606][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:02:59.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:02:59.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.611][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:02:59.613][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:02:59.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.615][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.617][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:02:59.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:02:59.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.622][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-05-24 16:02:59.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:02:59.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:02:59.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:02:59.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:02:59.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:02:59.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.637][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-05-24 16:02:59.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:02:59.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:02:59.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:02:59.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:02:59.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:02:59.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.652][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-05-24 16:02:59.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:02:59.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:02:59.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:02:59.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:02:59.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:02:59.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.672][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-05-24 16:02:59.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:02:59.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.677][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:02:59.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:02:59.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:02:59.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:02:59.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.687][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-05-24 16:02:59.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:02:59.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:02:59.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:02:59.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:02:59.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:02:59.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.701][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:02:59.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:02:59.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.706][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:02:59.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:02:59.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:02:59.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:02:59.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:59.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:59.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.721][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:02:59.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:02:59.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:59.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:59.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:59.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:59.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:59.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:59.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:59.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:59.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:59.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:59.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:59.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:59.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:02:59.757][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2.
biodb.TRACE[2025-05-24 16:02:59.759][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:59.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:59.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.764][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:02:59.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:02:59.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.769][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:59.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:02:59.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.774][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:02:59.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:02:59.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.779][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:02:59.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:02:59.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.783][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-05-24 16:02:59.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-05-24 16:02:59.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.788][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-05-24 16:02:59.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-05-24 16:02:59.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:59.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:59.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:02:59.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:02:59.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:59.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:59.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:59.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:59.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:59.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:59.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:59.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:59.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:59.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:59.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:59.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:59.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.847][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:02:59.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:02:59.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:02:59.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:02:59.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:02:59.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:02:59.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:59.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:59.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:59.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:59.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:59.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:59.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.884][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:59.885][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:59.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.888][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:02:59.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:02:59.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.903][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:02:59.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:02:59.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:02:59.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:02:59.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:02:59.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:02:59.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.918][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:02:59.919][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:02:59.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.922][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.923][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:02:59.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:02:59.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:02:59.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:02:59.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:02:59.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:02:59.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:02:59.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:02:59.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.953][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:02:59.954][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:02:59.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.957][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:02:59.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:02:59.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.973][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:02:59.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:02:59.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.978][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:02:59.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:02:59.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.983][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:02:59.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:02:59.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.988][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:02:59.989][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:02:59.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.991][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:02:59.993][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:02:59.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:02:59.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:02:59.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.007][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:00.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:00.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.012][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:00.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:00.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.017][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:00.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:00.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.022][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:00.024][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:00.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.026][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.027][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:00.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:00.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.042][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:00.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:00.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.048][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:00.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:00.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.053][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:00.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:00.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.058][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:00.059][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:00.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.062][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.063][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:00.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:00.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.078][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:00.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:00.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.083][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:00.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:00.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.087][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:00.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:00.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.092][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:00.093][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:00.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.096][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.097][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:00.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:00.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.116][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:00.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:00.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.121][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:00.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:00.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.126][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:00.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:00.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.131][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:00.132][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:00.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.134][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:00.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:00.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.150][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:00.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:00.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:00.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:00.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:00.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:00.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.165][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:00.167][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:00.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.169][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.170][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:00.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:00.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:00.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:00.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.191][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:00.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:00.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.196][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:00.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:00.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.201][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:00.202][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:00.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.204][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:00.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:00.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:00.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:00.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.225][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:00.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:00.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:00.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:00.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.235][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:00.236][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:00.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.238][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.240][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:00.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:00.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.255][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:00.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:00.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:00.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:00.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:00.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:00.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.270][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:00.271][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:00.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.273][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:00.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:00.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.289][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:00.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:00.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.294][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:00.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:00.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.300][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:00.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:00.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.305][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:00.306][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:00.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.308][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.309][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:00.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:00.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:00.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:00.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:00.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:00.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.335][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:00.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:00.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.340][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:00.341][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:00.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.343][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:00.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:00.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:00.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:00.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.365][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:00.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:00.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.370][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:00.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:00.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.375][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:00.376][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:00.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.378][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.380][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:00.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:00.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.395][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:00.396][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:00.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.399][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.405][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:00.407][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:00.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.409][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.415][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:00.417][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:00.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.419][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.425][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:00.426][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:00.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.429][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.435][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:00.437][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:00.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.439][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.445][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:00.447][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:00.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.449][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.456][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:00.457][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:00.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.459][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.466][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:00.467][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:00.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.470][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.476][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:00.478][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:00.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.480][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.486][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:00.488][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:00.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.490][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.497][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:00.498][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:00.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.501][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.507][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:00.508][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:00.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.511][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.517][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:00.518][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:00.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.522][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.529][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:00.530][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:00.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.532][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.538][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:00.540][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:00.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.542][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.549][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-65124-content.xml".
biodb.DEBUG[2025-05-24 16:03:00.572][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-05-24 16:03:00.574][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-05-24 16:03:00.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:00.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:00.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:00.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:00.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:00.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:00.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:00.590][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:00.591][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:00.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.594][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:00.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:00.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.600][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:00.601][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:00.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.604][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:00.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:00.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.610][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:00.612][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:00.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.615][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.616][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:00.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:00.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.621][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:00.623][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:00.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.625][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:00.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:00.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.632][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:00.633][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:00.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.635][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.637][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:00.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:00.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.642][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:00.643][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:00.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.645][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:00.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:00.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.652][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:00.653][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:00.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.656][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.657][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:00.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:00.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.662][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:00.664][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:00.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.666][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.668][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:00.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:00.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.673][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:00.674][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:00.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.676][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:00.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:00.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.683][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:00.684][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:00.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.687][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:00.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:00.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.693][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:00.695][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:00.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.697][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.699][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:00.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:00.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.704][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:00.705][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:00.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.708][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:00.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:00.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.714][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:00.716][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:00.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.718][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.720][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:00.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:00.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.725][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:00.726][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:00.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.729][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.730][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:00.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:00.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.735][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-05-24 16:03:00.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:00.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.740][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:00.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:00.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:00.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:00.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.750][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-05-24 16:03:00.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:00.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.756][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:00.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:00.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:00.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:00.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.766][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-05-24 16:03:00.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:00.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.771][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:00.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:00.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:00.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:00.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.781][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-05-24 16:03:00.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:00.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:00.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:00.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.791][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:00.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:00.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.796][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-05-24 16:03:00.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:00.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.801][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:00.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:00.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:00.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:00.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.811][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:00.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:00.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.816][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:00.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:00.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.821][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:00.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:00.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:00.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:00.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.832][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:00.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:00.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:00.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:00.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:00.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:00.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:00.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:00.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:00.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:00.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:00.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:00.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:00.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:00.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:00.867][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 65124.
biodb.TRACE[2025-05-24 16:03:00.870][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:03:00.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:03:00.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.875][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:03:00.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:03:00.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.880][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:03:00.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:03:00.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.886][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:03:00.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:03:00.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.892][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:03:00.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:03:00.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.897][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-05-24 16:03:00.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-05-24 16:03:00.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.902][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-05-24 16:03:00.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-05-24 16:03:00.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:00.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:00.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.918][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:00.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:00.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:00.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:00.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:00.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:00.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:00.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:00.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:00.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:00.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:00.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:00.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:00.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:00.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.959][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:00.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:00.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.964][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:00.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:00.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:00.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:00.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:00.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:00.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:00.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:00.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:00.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:00.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:00.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:00.996][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:01.003][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:01.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.006][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:01.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:01.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:01.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:01.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:01.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:01.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:01.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:01.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.037][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:01.039][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:01.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.041][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:01.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:01.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:01.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:01.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:01.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:01.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:01.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:01.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.072][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:01.073][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:01.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.077][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:01.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:01.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.093][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:01.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:01.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.098][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:01.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:01.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.103][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:01.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:01.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.108][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:01.109][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:01.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.111][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.113][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:01.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:01.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.128][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:01.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:01.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.133][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:01.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:01.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.138][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:01.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:01.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.143][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:01.145][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:01.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.147][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.148][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:01.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:01.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.163][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:01.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:01.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.168][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:01.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:01.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.173][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:01.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:01.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.178][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:01.179][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:01.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.182][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.183][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:01.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:01.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.197][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:01.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:01.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.202][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:01.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:01.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.207][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:01.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:01.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.212][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:01.213][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:01.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.216][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.217][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:01.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:01.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:01.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:01.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.236][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:01.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:01.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:01.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:01.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.246][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:01.247][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:01.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.250][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:01.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:01.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:01.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:01.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.270][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:01.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:01.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:01.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:01.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.281][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:01.282][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:01.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.284][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.285][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:01.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:01.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:01.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:01.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.305][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:01.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:01.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.310][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:01.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:01.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.315][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:01.316][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:01.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.319][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:01.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:01.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.335][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:01.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:01.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:01.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:01.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:01.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:01.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.350][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:01.351][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:01.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.354][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:01.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:01.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:01.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:01.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.375][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:01.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:01.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:01.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:01.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.385][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:01.386][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:01.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.389][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:01.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:01.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:01.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:01.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:01.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:01.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:01.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:01.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.420][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:01.421][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:01.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.423][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:01.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:01.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:01.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:01.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.451][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:01.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:01.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:01.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:01.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.461][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:01.462][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:01.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.465][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:01.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:01.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:01.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:01.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.485][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:01.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:01.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.490][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:01.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:01.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.495][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:01.496][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:01.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.499][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.500][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:01.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:01.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.514][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:01.515][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:01.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.518][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.523][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:01.525][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:01.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.527][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.533][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:01.534][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:01.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.537][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.542][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:01.544][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:01.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.546][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.552][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:01.553][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:01.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.555][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.561][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:01.562][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:01.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.565][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.570][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:01.572][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:01.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.574][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.580][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:01.582][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:01.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.584][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.590][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:01.591][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:01.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.593][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.600][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:01.601][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:01.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.603][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.609][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:01.611][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:01.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.613][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.619][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:01.620][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:01.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.623][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.628][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:01.630][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:01.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.632][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.638][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:01.639][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:01.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.641][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.648][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:01.649][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:01.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.651][ef$get] fields variable is a list.
biodb.INFO [2025-05-24 16:03:01.661][biodb::testThat]
biodb.INFO [2025-05-24 16:03:01.662][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-05-24 16:03:01.663][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:03:01.665][biodb::testThat]
biodb.DEBUG[2025-05-24 16:03:01.667][private$loadEntries] Creating entries from ids [2]: "2, 65124".
biodb.DEBUG[2025-05-24 16:03:01.669][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-05-24 16:03:01.672][cch$loadFileContent] Trying to load 2 files from cache: [2]: "2, 65124".
biodb.TRACE[2025-05-24 16:03:01.675][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2025-05-24 16:03:01.677][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/65124.xml".
biodb.DEBUG[2025-05-24 16:03:01.679][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-05-24 16:03:01.680][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-05-24 16:03:01.682][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-05-24 16:03:01.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:01.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:01.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:01.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:01.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:01.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:01.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:01.698][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:01.700][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:01.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.702][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:01.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:01.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.708][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:01.710][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:01.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.712][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:01.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:01.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.719][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:01.720][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:01.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.722][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:01.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:01.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.729][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:01.730][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:01.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.732][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:01.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:01.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.739][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:01.740][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:01.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.742][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:01.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:01.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.749][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:01.750][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:01.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.753][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:01.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:01.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.759][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:01.760][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:01.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.763][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.764][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:01.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:01.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.769][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:01.771][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:01.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.773][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.775][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:01.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:01.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.780][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:01.781][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:01.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.783][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:01.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:01.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.790][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:01.792][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:01.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.794][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:01.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:01.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.801][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:01.802][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:01.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.804][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.806][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:01.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:01.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.811][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:01.812][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:01.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.815][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:01.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:01.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.821][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:01.822][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:01.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.825][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.826][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:01.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:01.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.831][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:01.833][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:01.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.835][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.837][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:01.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:01.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.842][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-05-24 16:03:01.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:01.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:01.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:01.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:01.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:01.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.856][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-05-24 16:03:01.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:01.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:01.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:01.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:01.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:01.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.872][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-05-24 16:03:01.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:01.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:01.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:01.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:01.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:01.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.892][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-05-24 16:03:01.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:01.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:01.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:01.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:01.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:01.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.906][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-05-24 16:03:01.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:01.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.911][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:01.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:01.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:01.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:01.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.921][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:01.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:01.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.925][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:01.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:01.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.930][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:01.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:01.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:01.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:01.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.940][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:01.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:01.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:01.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:01.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:01.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:01.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:01.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:01.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:01.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:01.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:01.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:01.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:01.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:01.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:01.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:01.975][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:01.976][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:01.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.978][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:01.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:01.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.985][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:01.986][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:01.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.988][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:01.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:01.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:01.995][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:01.996][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:01.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:01.998][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.000][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:02.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:02.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.004][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:02.006][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:02.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.008][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.009][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:02.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:02.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.014][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:02.016][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:02.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.018][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:02.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:02.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.024][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:02.025][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:02.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.028][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:02.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:02.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.034][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:02.036][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:02.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.038][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.040][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:02.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:02.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.045][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:02.046][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:02.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.048][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.050][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:02.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:02.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.055][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:02.056][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:02.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.058][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:02.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:02.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.065][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:02.066][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:02.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.069][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:02.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:02.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.075][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:02.076][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:02.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.079][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.080][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:02.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:02.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.085][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:02.087][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:02.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.089][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:02.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:02.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.095][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:02.097][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:02.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.099][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.101][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:02.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:02.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.105][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:02.107][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:02.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.109][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.111][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:02.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:02.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.116][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-05-24 16:03:02.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:02.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.121][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:02.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:02.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:02.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:02.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.130][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-05-24 16:03:02.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:02.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:02.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:02.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:02.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:02.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.145][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-05-24 16:03:02.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:02.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.150][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:02.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:02.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:02.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:02.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.160][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-05-24 16:03:02.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:02.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:02.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:02.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.170][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:02.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:02.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.174][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-05-24 16:03:02.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:02.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:02.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:02.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.184][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:02.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:02.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.189][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:02.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:02.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.194][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:02.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:02.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.199][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:02.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:02.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:02.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:02.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.209][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:02.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:02.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:02.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:02.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:02.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:02.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:02.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:02.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:02.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:02.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:02.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:02.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:02.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:02.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:02.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:02.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:02.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:02.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:02.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:02.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:02.258][self$createEntryFromContent] Accession numbers: 2, 65124.
biodb.TRACE[2025-05-24 16:03:02.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-05-24 16:03:02.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-05-24 16:03:02.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-05-24 16:03:02.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-05-24 16:03:02.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-05-24 16:03:02.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-05-24 16:03:02.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-05-24 16:03:02.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-05-24 16:03:02.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-05-24 16:03:02.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-05-24 16:03:02.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-05-24 16:03:02.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-05-24 16:03:02.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-05-24 16:03:02.303][biodb::testThat]
biodb.INFO [2025-05-24 16:03:02.304][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-05-24 16:03:02.305][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:03:02.306][biodb::testThat]
biodb.TRACE[2025-05-24 16:03:02.310][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:02.312][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:02.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.319][ef$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:02.321][function(conn, opt)] Testing searchForEntries() with entry "2" and field "name".
biodb.TRACE[2025-05-24 16:03:02.336][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:02.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:02.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.341][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:02.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:02.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.346][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:02.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:02.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:02.354][function(conn, opt)] With value "(2-acetyloxy-3-carboxypropyl)-trimethylazanium".
biodb.DEBUG[2025-05-24 16:03:02.361][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2025-05-24 16:03:02.365][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:02.367][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2025-05-24 16:03:02.368][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:02.370][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2025-05-24 16:03:02.372][function(conn, opt)] With found IDs [5]: "87229113, 25217148, 450343, 450342, 2".
biodb.TRACE[2025-05-24 16:03:02.387][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:02.388][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:02.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.391][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.392][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:02.393][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:02.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.395][ef$get] fields variable is a list.
biodb.INFO [2025-05-24 16:03:02.401][biodb::testThat]
biodb.INFO [2025-05-24 16:03:02.402][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-05-24 16:03:02.403][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:03:02.404][biodb::testThat]
biodb.TRACE[2025-05-24 16:03:02.418][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:02.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:02.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.423][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:02.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:02.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.428][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:02.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:02.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:02.470][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2025-05-24 16:03:02.474][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:02.476][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2025-05-24 16:03:02.478][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:02.479][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.INFO [2025-05-24 16:03:02.501][biodb::testThat]
biodb.INFO [2025-05-24 16:03:02.502][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-05-24 16:03:02.503][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:03:02.504][biodb::testThat]
biodb.TRACE[2025-05-24 16:03:02.517][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:03:02.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:03:02.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.522][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:03:02.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:03:02.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:03:02.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:03:02.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.533][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:03:02.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:03:02.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.538][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:03:02.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:03:02.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.543][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-05-24 16:03:02.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-05-24 16:03:02.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.548][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-05-24 16:03:02.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-05-24 16:03:02.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.555][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:03:02.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:03:02.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.560][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:03:02.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:03:02.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:03:02.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:03:02.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.570][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:03:02.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:03:02.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.575][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:03:02.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:03:02.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.580][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-05-24 16:03:02.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-05-24 16:03:02.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:02.585][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-05-24 16:03:02.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-05-24 16:03:02.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:02.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-05-24 16:03:02.597][biodb::testThat]
biodb.INFO [2025-05-24 16:03:02.598][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-05-24 16:03:02.600][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:03:02.601][biodb::testThat]
biodb.INFO [2025-05-24 16:03:02.611][biodb::testThat]
biodb.INFO [2025-05-24 16:03:02.612][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-05-24 16:03:02.613][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:03:02.615][biodb::testThat]
biodb.INFO [2025-05-24 16:03:02.625][biodb::testThat]
biodb.INFO [2025-05-24 16:03:02.626][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-05-24 16:03:02.628][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:03:02.629][biodb::testThat]
biodb.DEBUG[2025-05-24 16:03:02.633][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/compound/2".
biodb.DEBUG[2025-05-24 16:03:02.821][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/compound/2.
biodb.INFO [2025-05-24 16:03:02.968][biodb::testThat]
biodb.INFO [2025-05-24 16:03:02.970][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-05-24 16:03:02.971][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:03:02.972][biodb::testThat]
biodb.DEBUG[2025-05-24 16:03:03.058][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?cid=2&t=l.
biodb.TRACE[2025-05-24 16:03:03.120][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:03.121][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:03.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:03.124][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:03.125][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:03.126][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:03.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:03.129][ef$get] fields variable is a list.
biodb.INFO [2025-05-24 16:03:03.131][biodb::testThat]
biodb.INFO [2025-05-24 16:03:03.132][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-05-24 16:03:03.133][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:03:03.134][biodb::testThat]
biodb.TRACE[2025-05-24 16:03:03.148][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:03.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:03.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:03.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:03.153][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:03.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:03.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:03.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:03.158][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:03.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:03.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:03.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:03.286][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2025-05-24 16:03:03.290][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:03.292][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2025-05-24 16:03:03.293][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:03.295][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2025-05-24 16:03:03.388][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2025-05-24 16:03:03.392][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:03.393][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2025-05-24 16:03:03.395][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:03.396][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.TRACE[2025-05-24 16:03:03.413][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-05-24 16:03:03.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-05-24 16:03:03.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:03.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:03.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:03.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:03.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:03.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:03.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:03.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:03.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:03.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:03.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:03.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:03.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:03.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:03.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:03.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:03.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:03.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:03.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:03.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:03.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:03.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:03.456][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:03.461][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:03.463][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-05-24 16:03:03.464][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:03.466][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-05-24 16:03:03.483][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2025-05-24 16:03:03.487][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:03.489][cch$loadFileContent] Trying to load 1 files from cache: [1]: "43af01c58cfaf2fe3448c11004a21986".
biodb.TRACE[2025-05-24 16:03:03.490][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:03.494][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/43af01c58cfaf2fe3448c11004a21986.content".
biodb.DEBUG[2025-05-24 16:03:03.969][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2025-05-24 16:03:03.974][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:03.975][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5a651e56a091cb06291b388106735d55".
biodb.TRACE[2025-05-24 16:03:03.977][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:03.978][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/5a651e56a091cb06291b388106735d55.content".
biodb.DEBUG[2025-05-24 16:03:04.004][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.27[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2025-05-24 16:03:04.009][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:04.010][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d3d0da2755d093596dae584b7698bc73".
biodb.TRACE[2025-05-24 16:03:04.012][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:04.014][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/d3d0da2755d093596dae584b7698bc73.content".
biodb.TRACE[2025-05-24 16:03:04.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:04.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:04.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:04.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:04.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:04.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:04.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:04.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:04.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:04.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:04.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:04.064][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:04.068][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:04.070][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1384af38a786fc6768cd7f1e796d96ab".
biodb.TRACE[2025-05-24 16:03:04.071][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:04.073][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1384af38a786fc6768cd7f1e796d96ab.content".
biodb.DEBUG[2025-05-24 16:03:04.090][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2025-05-24 16:03:04.095][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:04.096][cch$loadFileContent] Trying to load 1 files from cache: [1]: "983d3a3af3901d23b5d919d379c6bd32".
biodb.TRACE[2025-05-24 16:03:04.098][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:04.100][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/983d3a3af3901d23b5d919d379c6bd32.content".
biodb.DEBUG[2025-05-24 16:03:04.120][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2025-05-24 16:03:04.125][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:04.126][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9a9be2efcff8c77fef3b8a87f25b444".
biodb.TRACE[2025-05-24 16:03:04.128][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:04.130][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/b9a9be2efcff8c77fef3b8a87f25b444.content".
biodb.DEBUG[2025-05-24 16:03:04.156][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358309[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2025-05-24 16:03:04.160][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:04.162][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6d4e46c6f0a021fc6e92911d60537192".
biodb.TRACE[2025-05-24 16:03:04.163][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:04.165][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6d4e46c6f0a021fc6e92911d60537192.content".
biodb.TRACE[2025-05-24 16:03:04.187][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-05-24 16:03:04.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-05-24 16:03:04.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-05-24 16:03:04.201][biodb::testThat]
biodb.INFO [2025-05-24 16:03:04.203][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-05-24 16:03:04.204][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:03:04.205][biodb::testThat]
biodb.TRACE[2025-05-24 16:03:04.208][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-05-24 16:03:04.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-05-24 16:03:04.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.213][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-05-24 16:03:04.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-05-24 16:03:04.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:04.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:04.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:04.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:04.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:04.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:04.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:04.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:04.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:04.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:04.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:04.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:04.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:04.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:04.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:04.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:04.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:04.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:04.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:04.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:04.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:04.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:04.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:04.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:04.280][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:04.284][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:04.286][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-05-24 16:03:04.287][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:04.289][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-05-24 16:03:04.291][private$loadEntries] Creating entries from ids [3]: "175637135, 175636749, 175622121".
biodb.DEBUG[2025-05-24 16:03:04.292][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-05-24 16:03:04.294][cch$loadFileContent] Trying to load 3 files from cache: [3]: "175637135, 175636749, 175622121".
biodb.TRACE[2025-05-24 16:03:04.296][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2025-05-24 16:03:04.299][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/175637135.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/175636749.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/175622121.xml".
biodb.DEBUG[2025-05-24 16:03:04.301][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-05-24 16:03:04.302][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-05-24 16:03:04.304][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-05-24 16:03:04.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:04.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:04.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:04.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:04.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:04.316][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:04.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:04.323][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:04.324][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:04.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.327][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:04.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:04.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.333][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:04.335][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:04.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.337][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.338][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:04.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:04.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.344][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:04.345][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:04.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.347][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:04.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:04.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.354][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:04.355][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:04.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.357][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:04.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:04.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.364][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:04.365][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:04.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.368][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:04.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:04.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.374][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:04.376][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:04.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.378][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:04.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:04.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.391][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:04.392][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:04.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.395][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.396][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:04.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:04.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.401][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:04.403][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:04.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.405][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.407][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:04.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:04.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.412][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:04.413][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:04.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.415][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:04.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:04.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.422][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:04.423][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:04.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.425][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:04.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:04.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.432][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:04.433][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:04.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.436][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.437][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:04.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:04.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.442][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:04.444][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:04.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.446][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:04.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:04.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.452][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:04.454][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:04.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.456][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.458][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:04.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:04.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.463][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:04.464][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:04.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.466][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.468][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:04.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:04.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.473][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-05-24 16:03:04.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:04.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.478][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:04.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:04.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:04.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:04.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.487][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-05-24 16:03:04.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:04.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:04.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:04.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:04.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:04.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.502][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-05-24 16:03:04.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:04.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:04.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:04.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:04.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:04.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.517][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-05-24 16:03:04.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:04.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:04.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:04.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:04.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:04.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.531][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-05-24 16:03:04.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:04.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:04.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:04.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:04.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:04.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.546][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:04.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:04.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.551][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:04.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:04.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:04.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:04.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:04.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:04.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.566][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:04.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:04.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:04.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:04.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:04.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:04.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:04.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:04.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:04.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:04.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:04.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:04.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:04.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:04.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:04.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:04.601][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:04.602][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:04.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.605][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:04.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:04.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.611][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:04.613][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:04.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.615][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:04.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:04.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.622][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:04.623][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:04.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.626][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.628][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:04.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:04.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.633][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:04.635][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:04.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.637][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:04.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:04.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.644][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:04.645][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:04.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.647][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.649][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:04.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:04.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.654][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:04.655][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:04.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.658][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.659][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:04.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:04.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.665][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:04.666][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:04.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.668][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.670][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:04.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:04.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.675][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:04.676][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:04.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.679][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.680][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:04.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:04.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.685][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:04.687][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:04.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.689][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:04.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:04.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.696][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:04.697][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:04.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.699][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:04.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:04.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.706][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:04.708][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:04.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.710][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.712][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:04.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:04.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.717][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:04.718][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:04.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.720][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:04.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:04.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.727][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:04.728][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:04.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.731][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.732][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:04.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:04.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.737][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:04.739][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:04.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.741][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.743][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:04.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:04.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.748][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-05-24 16:03:04.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:04.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.753][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:04.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:04.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:04.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:04.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.763][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-05-24 16:03:04.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:04.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:04.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:04.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:04.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:04.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.778][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-05-24 16:03:04.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:04.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:04.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:04.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:04.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:04.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.799][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-05-24 16:03:04.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:04.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:04.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:04.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:04.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:04.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.814][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-05-24 16:03:04.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:04.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:04.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:04.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:04.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:04.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.829][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:04.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:04.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.834][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:04.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:04.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.839][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:04.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:04.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:04.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:04.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.848][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:04.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:04.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:04.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:04.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:04.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:04.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:04.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:04.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:04.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:04.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:04.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:04.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:04.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:04.878][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:04.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:04.882][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:04.883][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:04.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.886][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:04.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:04.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.892][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:04.893][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:04.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.895][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:04.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:04.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.902][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:04.903][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:04.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.905][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.907][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:04.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:04.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.912][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:04.913][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:04.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.915][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.917][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:04.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:04.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.922][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:04.923][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:04.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.926][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.927][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:04.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:04.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.932][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:04.933][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:04.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.936][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:04.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:04.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.942][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:04.943][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:04.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.946][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.947][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:04.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:04.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.952][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:04.953][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:04.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.956][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.957][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:04.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:04.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.962][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:04.963][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:04.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.966][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:04.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:04.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.972][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:04.973][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:04.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.976][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:04.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:04.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.982][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:04.984][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:04.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.986][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.987][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:04.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:04.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.992][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:04.994][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:04.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:04.996][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:04.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:04.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:05.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.003][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:05.005][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:05.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.007][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.009][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:05.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:05.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.014][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:05.015][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:05.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.018][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.019][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:05.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:05.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.027][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-05-24 16:03:05.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:05.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:05.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:05.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:05.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:05.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.042][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-05-24 16:03:05.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:05.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.047][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:05.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:05.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:05.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:05.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.057][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-05-24 16:03:05.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:05.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:05.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:05.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:05.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:05.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.072][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-05-24 16:03:05.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:05.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:05.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:05.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:05.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:05.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.086][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-05-24 16:03:05.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:05.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:05.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:05.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:05.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:05.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.101][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:05.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:05.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.106][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.111][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:05.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:05.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.121][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:05.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:05.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:05.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:05.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:05.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:05.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:05.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:05.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:05.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:05.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:05.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:05.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:05.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:05.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:05.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:05.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:05.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:05.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:05.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:05.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:05.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:05.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:05.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:05.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:05.190][self$createEntryFromContent] Accession numbers: 175637135, 175636749, 175622121.
biodb.DEBUG[2025-05-24 16:03:05.191][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:05.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:05.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:05.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:05.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:05.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:05.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:05.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:05.206][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.211][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.215][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:05.217][private$selectFields]
biodb.TRACE[2025-05-24 16:03:05.218][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:05.219][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:05.220][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:05.221][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.222][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.225][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.226][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.227][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.230][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.231][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:05.232][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:05.233][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.234][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.237][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.238][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:05.239][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.244][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.266][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175637135].
biodb.DEBUG[2025-05-24 16:03:05.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:05.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:05.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:05.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:05.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:05.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:05.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:05.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.285][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.290][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:05.291][private$selectFields]
biodb.TRACE[2025-05-24 16:03:05.292][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:05.294][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:05.295][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:05.296][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.297][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.299][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.301][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.302][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.304][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.305][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:05.307][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:05.308][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.309][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.311][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.313][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:05.314][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.324][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.329][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175636749].
biodb.DEBUG[2025-05-24 16:03:05.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:05.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:05.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:05.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:05.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:05.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:05.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:05.343][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.348][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.353][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:05.354][private$selectFields]
biodb.TRACE[2025-05-24 16:03:05.355][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:05.356][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:05.358][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:05.359][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.360][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.362][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.364][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.365][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.367][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.369][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:05.370][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:05.371][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.372][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.375][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.376][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:05.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.388][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:05.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.393][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175622121].
biodb.DEBUG[2025-05-24 16:03:05.394][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:05.395][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:05.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:05.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:05.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:05.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:05.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:05.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:05.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:05.419][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:05.423][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-05-24 16:03:05.424][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-05-24 16:03:05.426][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-05-24 16:03:05.485][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-05-24 16:03:05.487][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-05-24 16:03:05.488][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-05-24 16:03:05.490][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-05-24 16:03:05.569][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-05-24 16:03:05.571][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content"
biodb.TRACE[2025-05-24 16:03:05.591][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.request"
biodb.DEBUG[2025-05-24 16:03:05.594][private$loadEntries] Creating entries from ids [3]: "175614838, 175610581, 175609559".
biodb.DEBUG[2025-05-24 16:03:05.596][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-05-24 16:03:05.598][cch$loadFileContent] Trying to load 3 files from cache: [3]: "175614838, 175610581, 175609559".
biodb.TRACE[2025-05-24 16:03:05.599][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-05-24 16:03:05.601][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-05-24 16:03:05.602][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-05-24 16:03:05.603][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-05-24 16:03:05.605][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-05-24 16:03:05.606][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-05-24 16:03:05.607][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2025-05-24 16:03:05.609][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/175614838,175610581,175609559/XML".
biodb.DEBUG[2025-05-24 16:03:05.612][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-05-24 16:03:05.613][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-05-24 16:03:05.615][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/175614838,175610581,175609559/XML".
biodb.TRACE[2025-05-24 16:03:05.742][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/175614838,175610581,175609559/XML).
biodb.TRACE[2025-05-24 16:03:05.858][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/175614838.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/175610581.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/175609559.xml"
biodb.DEBUG[2025-05-24 16:03:05.861][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-05-24 16:03:05.862][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-05-24 16:03:05.864][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-05-24 16:03:05.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:05.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:05.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:05.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:05.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:05.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:05.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:05.882][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:05.883][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:05.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.885][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:05.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:05.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.894][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:05.895][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:05.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.898][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.899][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:05.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:05.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.905][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:05.906][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:05.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.908][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:05.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:05.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.915][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:05.916][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:05.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.919][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:05.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:05.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.926][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:05.927][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:05.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.929][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:05.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:05.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.936][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:05.937][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:05.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.940][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.941][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:05.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:05.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.946][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:05.947][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:05.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.960][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.962][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:05.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:05.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.967][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:05.968][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:05.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.971][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.972][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:05.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:05.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.977][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:05.978][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:05.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.981][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:05.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:05.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.987][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:05.988][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:05.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.991][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:05.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:05.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:05.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:05.997][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:05.999][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:06.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.001][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.003][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:06.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:06.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.008][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:06.009][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:06.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.011][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:06.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:06.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.018][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:06.019][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:06.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.022][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.023][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:06.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:06.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.028][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:06.029][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:06.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.032][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.033][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:06.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:06.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.038][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-05-24 16:03:06.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:06.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:06.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:06.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:06.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:06.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.053][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-05-24 16:03:06.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:06.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:06.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:06.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:06.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:06.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.067][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-05-24 16:03:06.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:06.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:06.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:06.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:06.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:06.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.081][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-05-24 16:03:06.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:06.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.086][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:06.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:06.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:06.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:06.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.096][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-05-24 16:03:06.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:06.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:06.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:06.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:06.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:06.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.110][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:06.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:06.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.115][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.120][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:06.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:06.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.131][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:06.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:06.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:06.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:06.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:06.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:06.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:06.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:06.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:06.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:06.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:06.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:06.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:06.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:06.166][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:06.167][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:06.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.170][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:06.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:06.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.176][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:06.178][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:06.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.180][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:06.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:06.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.187][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:06.188][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:06.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.191][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:06.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:06.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.197][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:06.199][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:06.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.201][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:06.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:06.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.208][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:06.209][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:06.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.211][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.213][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:06.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:06.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.218][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:06.219][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:06.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.222][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:06.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:06.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.228][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:06.230][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:06.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.232][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.234][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:06.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:06.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.239][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:06.240][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:06.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.242][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.244][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:06.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:06.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.249][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:06.250][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:06.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.253][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:06.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:06.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.259][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:06.261][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:06.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.263][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:06.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:06.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.270][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:06.271][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:06.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.273][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.275][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:06.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:06.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.280][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:06.282][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:06.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.284][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:06.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:06.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.291][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:06.292][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:06.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.295][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.296][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:06.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:06.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.301][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:06.303][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:06.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.305][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.307][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:06.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:06.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.312][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-05-24 16:03:06.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:06.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:06.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:06.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:06.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:06.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.327][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-05-24 16:03:06.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:06.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.332][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:06.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:06.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.337][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:06.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:06.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.342][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-05-24 16:03:06.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:06.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.347][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:06.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:06.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.406][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:06.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:06.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.412][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-05-24 16:03:06.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:06.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:06.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:06.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:06.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:06.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.427][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-05-24 16:03:06.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:06.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:06.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:06.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:06.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:06.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.443][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:06.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:06.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.448][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:06.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:06.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.463][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:06.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:06.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:06.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:06.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:06.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:06.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:06.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:06.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:06.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:06.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:06.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:06.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:06.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:06.499][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:06.501][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:06.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.503][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:06.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:06.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.509][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:06.511][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:06.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.513][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:06.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:06.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.519][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:06.521][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:06.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.523][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:06.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:06.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.530][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:06.531][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:06.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.533][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:06.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:06.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.540][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:06.541][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:06.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.543][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:06.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:06.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.550][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:06.551][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:06.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.554][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.555][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:06.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:06.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.560][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:06.562][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:06.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.564][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.565][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:06.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:06.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.570][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:06.572][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:06.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.574][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.576][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:06.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:06.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.581][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:06.582][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:06.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.584][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:06.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:06.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.591][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:06.592][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:06.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.595][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:06.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:06.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.602][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:06.603][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:06.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.605][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.607][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:06.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:06.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.613][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:06.615][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:06.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.618][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:06.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:06.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.625][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:06.626][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:06.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.628][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.630][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:06.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:06.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.635][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:06.636][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:06.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.638][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.640][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:06.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:06.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.645][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-05-24 16:03:06.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:06.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.650][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:06.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:06.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.655][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:06.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:06.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.660][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-05-24 16:03:06.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:06.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.665][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:06.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:06.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:06.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:06.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.675][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-05-24 16:03:06.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:06.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.680][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:06.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:06.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.685][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:06.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:06.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.690][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-05-24 16:03:06.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:06.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:06.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:06.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:06.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:06.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.704][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-05-24 16:03:06.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:06.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:06.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:06.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:06.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:06.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.719][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:06.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:06.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.724][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.729][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:06.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:06.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.739][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:06.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:06.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:06.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:06.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:06.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:06.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:06.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:06.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:06.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:06.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:06.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:06.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:06.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:06.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:06.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:06.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:06.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:06.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:06.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:06.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:06.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:06.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:06.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:06.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:06.805][self$createEntryFromContent] Accession numbers: 175614838, 175610581, 175609559.
biodb.DEBUG[2025-05-24 16:03:06.849][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:06.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:06.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:06.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:06.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:06.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:06.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:06.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:06.896][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.901][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.905][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:06.907][private$selectFields]
biodb.TRACE[2025-05-24 16:03:06.908][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:06.909][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:06.910][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:06.911][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.913][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.915][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.916][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.917][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.920][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.921][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:06.922][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:06.923][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.924][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.927][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.928][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:06.930][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.945][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175614838].
biodb.DEBUG[2025-05-24 16:03:06.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:06.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:06.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:06.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:06.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:06.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:06.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:06.959][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.964][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.969][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:06.970][private$selectFields]
biodb.TRACE[2025-05-24 16:03:06.971][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:06.972][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:06.973][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:06.974][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.976][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.978][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.979][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.981][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.983][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.984][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:06.985][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:06.987][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.988][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.990][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.991][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:06.993][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:06.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:06.998][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:06.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.003][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.008][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175610581].
biodb.DEBUG[2025-05-24 16:03:07.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:07.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:07.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:07.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:07.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:07.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:07.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:07.023][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.028][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.032][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:07.034][private$selectFields]
biodb.TRACE[2025-05-24 16:03:07.035][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:07.036][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:07.037][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:07.038][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.040][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.042][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.043][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.044][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.047][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.048][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:07.049][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:07.050][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.052][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.054][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.055][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:07.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.061][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.066][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.071][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175609559].
biodb.DEBUG[2025-05-24 16:03:07.072][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:07.073][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-05-24 16:03:07.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:07.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:07.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:07.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:07.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:07.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:07.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:07.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:07.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:07.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:07.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:07.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:07.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:07.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:07.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:07.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:07.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:07.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:07.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:07.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:07.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:07.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:07.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:07.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:07.215][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:07.219][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:07.220][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-05-24 16:03:07.222][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:07.224][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-05-24 16:03:07.226][private$loadEntries] Creating entries from ids [2]: "175639468, 175636537".
biodb.DEBUG[2025-05-24 16:03:07.227][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-05-24 16:03:07.229][cch$loadFileContent] Trying to load 2 files from cache: [2]: "175639468, 175636537".
biodb.TRACE[2025-05-24 16:03:07.231][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2025-05-24 16:03:07.233][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/175639468.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/175636537.xml".
biodb.DEBUG[2025-05-24 16:03:07.235][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-05-24 16:03:07.236][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-05-24 16:03:07.243][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-05-24 16:03:07.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:07.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:07.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:07.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:07.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:07.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:07.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:07.262][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:07.264][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:07.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.266][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:07.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:07.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.273][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:07.274][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:07.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.276][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.278][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:07.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:07.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.283][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:07.284][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:07.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.286][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:07.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:07.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.293][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:07.294][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:07.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.297][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:07.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:07.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.303][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:07.304][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:07.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.307][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:07.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:07.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.313][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:07.315][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:07.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.317][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.319][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:07.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:07.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.324][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:07.325][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:07.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.327][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.329][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:07.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:07.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.334][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:07.335][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:07.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.337][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.339][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:07.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:07.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.344][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:07.346][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:07.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.348][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.350][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:07.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:07.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.355][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:07.356][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:07.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.358][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:07.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:07.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.365][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:07.366][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:07.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.368][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.370][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:07.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:07.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.375][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:07.376][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:07.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.378][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:07.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:07.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.385][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:07.386][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:07.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.389][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.390][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:07.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:07.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.395][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:07.396][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:07.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.399][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.400][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:07.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:07.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.405][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-05-24 16:03:07.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:07.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:07.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:07.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:07.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:07.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.420][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-05-24 16:03:07.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:07.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:07.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:07.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:07.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:07.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.435][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-05-24 16:03:07.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:07.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:07.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:07.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:07.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:07.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.449][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-05-24 16:03:07.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:07.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:07.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:07.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:07.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:07.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.464][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-05-24 16:03:07.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:07.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:07.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:07.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:07.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:07.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.478][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:07.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:07.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.484][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.489][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:07.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:07.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.498][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:07.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:07.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:07.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:07.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:07.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:07.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:07.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:07.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:07.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:07.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:07.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:07.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:07.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:07.533][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:07.534][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:07.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.537][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:07.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:07.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.543][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:07.545][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:07.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.547][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:07.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:07.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.554][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:07.555][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:07.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.557][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:07.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:07.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.564][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:07.565][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:07.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.568][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.569][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:07.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:07.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.574][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:07.576][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:07.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.578][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:07.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:07.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.585][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:07.586][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:07.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.589][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:07.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:07.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.595][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:07.596][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:07.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.599][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.600][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:07.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:07.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.606][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:07.607][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:07.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.609][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.611][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:07.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:07.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.616][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:07.617][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:07.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.619][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.621][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:07.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:07.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.626][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:07.627][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:07.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.630][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:07.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:07.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.636][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:07.638][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:07.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.640][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.642][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:07.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:07.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.647][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:07.648][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:07.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.650][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:07.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:07.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.657][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:07.658][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:07.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.661][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.662][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:07.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:07.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.673][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:07.675][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:07.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.678][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.679][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:07.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:07.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.685][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-05-24 16:03:07.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:07.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:07.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:07.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.694][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:07.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:07.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.699][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-05-24 16:03:07.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:07.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.704][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:07.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:07.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:07.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:07.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.714][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-05-24 16:03:07.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:07.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:07.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:07.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:07.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:07.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.729][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-05-24 16:03:07.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:07.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:07.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:07.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:07.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:07.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.744][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-05-24 16:03:07.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:07.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:07.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:07.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:07.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:07.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.759][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:07.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:07.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.764][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.769][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:07.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:07.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.778][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:07.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:07.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:07.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:07.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:07.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:07.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:07.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:07.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:07.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:07.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:07.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:07.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:07.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:07.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:07.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:07.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:07.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:07.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:07.828][self$createEntryFromContent] Accession numbers: 175639468, 175636537.
biodb.DEBUG[2025-05-24 16:03:07.829][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:07.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:07.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:07.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:07.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:07.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:07.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:07.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:07.845][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.850][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.854][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:07.856][private$selectFields]
biodb.TRACE[2025-05-24 16:03:07.857][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:07.858][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:07.859][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:07.860][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.862][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.864][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.865][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.867][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.869][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.870][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:07.871][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:07.873][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.874][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.876][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.877][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:07.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.884][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.889][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.894][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175639468].
biodb.DEBUG[2025-05-24 16:03:07.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:07.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:07.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:07.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:07.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:07.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:07.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:07.926][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.931][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.964][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:07.966][private$selectFields]
biodb.TRACE[2025-05-24 16:03:07.967][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:07.968][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:07.969][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:07.971][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.972][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.974][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.975][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.977][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:07.979][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:07.980][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:07.995][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:07.996][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.997][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:07.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.000][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.001][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:08.002][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:08.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:08.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.007][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:08.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:08.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.012][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:08.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:08.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.018][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175636749].
biodb.DEBUG[2025-05-24 16:03:08.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:08.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:08.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:08.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:08.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:08.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:08.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:08.033][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:08.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:08.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.038][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:08.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:08.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.043][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:08.044][private$selectFields]
biodb.TRACE[2025-05-24 16:03:08.045][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:08.046][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:08.047][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:08.049][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:08.050][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:08.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.052][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.053][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:08.055][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:08.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.057][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.058][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:08.059][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:08.061][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:08.062][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:08.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.064][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.065][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:08.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:08.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:08.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.072][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:08.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:08.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.076][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:08.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:08.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.088][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175636537].
biodb.DEBUG[2025-05-24 16:03:08.089][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:08.091][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:08.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:08.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:08.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:08.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:08.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:08.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:08.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:08.114][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:08.118][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-05-24 16:03:08.119][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-05-24 16:03:08.121][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-05-24 16:03:08.282][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-05-24 16:03:08.283][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-05-24 16:03:08.285][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-05-24 16:03:08.287][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-05-24 16:03:08.355][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-05-24 16:03:08.357][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content"
biodb.TRACE[2025-05-24 16:03:08.362][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.request"
biodb.DEBUG[2025-05-24 16:03:08.365][private$loadEntries] Creating entries from ids [3]: "175625165, 175623244, 175621446".
biodb.DEBUG[2025-05-24 16:03:08.366][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-05-24 16:03:08.368][cch$loadFileContent] Trying to load 3 files from cache: [3]: "175625165, 175623244, 175621446".
biodb.TRACE[2025-05-24 16:03:08.369][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-05-24 16:03:08.371][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-05-24 16:03:08.372][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-05-24 16:03:08.373][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-05-24 16:03:08.375][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-05-24 16:03:08.376][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-05-24 16:03:08.400][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2025-05-24 16:03:08.402][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/175625165,175623244,175621446/XML".
biodb.DEBUG[2025-05-24 16:03:08.405][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-05-24 16:03:08.406][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-05-24 16:03:08.408][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/175625165,175623244,175621446/XML".
biodb.TRACE[2025-05-24 16:03:08.483][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/175625165,175623244,175621446/XML).
biodb.TRACE[2025-05-24 16:03:08.598][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/175625165.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/175623244.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/175621446.xml"
biodb.DEBUG[2025-05-24 16:03:08.601][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-05-24 16:03:08.602][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-05-24 16:03:08.604][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-05-24 16:03:08.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:08.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:08.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:08.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:08.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:08.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:08.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:08.621][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:08.622][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:08.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.624][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:08.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:08.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.631][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:08.632][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:08.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.635][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:08.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:08.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.641][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:08.643][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:08.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.645][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:08.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:08.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.652][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:08.653][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:08.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.655][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:08.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:08.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.662][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:08.664][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:08.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.666][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.667][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:08.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:08.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.673][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:08.674][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:08.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.676][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:08.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:08.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.683][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:08.684][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:08.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.687][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.688][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:08.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:08.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.694][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:08.695][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:08.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.697][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.699][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:08.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:08.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.704][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:08.705][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:08.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.708][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.709][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:08.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:08.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.714][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:08.716][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:08.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.718][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:08.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:08.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.724][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:08.726][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:08.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.728][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.730][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:08.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:08.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.734][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:08.736][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:08.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.738][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:08.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:08.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.745][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:08.746][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:08.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.748][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.750][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:08.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:08.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.755][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:08.756][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:08.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.759][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.760][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:08.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:08.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.765][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-05-24 16:03:08.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:08.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:08.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:08.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.775][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:08.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:08.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.780][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-05-24 16:03:08.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:08.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:08.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:08.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.790][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:08.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:08.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.795][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-05-24 16:03:08.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:08.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:08.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:08.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:08.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:08.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.810][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-05-24 16:03:08.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:08.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.815][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:08.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:08.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:08.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:08.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.825][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-05-24 16:03:08.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:08.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:08.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:08.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:08.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:08.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.840][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:08.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:08.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.845][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:08.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:08.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.850][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:08.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:08.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:08.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:08.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.860][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:08.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:08.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:08.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:08.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:08.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:08.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:08.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:08.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:08.880][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:08.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:08.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:08.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:08.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:08.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:08.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:08.896][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:08.897][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:08.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.899][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:08.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:08.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.906][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:08.907][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:08.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.910][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.911][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:08.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:08.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.927][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:08.928][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:08.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.931][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:08.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:08.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.938][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:08.940][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:08.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.942][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.944][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:08.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:08.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.949][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:08.950][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:08.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.952][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:08.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:08.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.959][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:08.960][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:08.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.963][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:08.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:08.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.970][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:08.971][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:08.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.973][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.975][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:08.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:08.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.980][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:08.981][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:08.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.984][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.985][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:08.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:08.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.990][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:08.992][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:08.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:08.994][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:08.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:08.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:08.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.001][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:09.002][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:09.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.005][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:09.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:09.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.011][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:09.013][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:09.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.015][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.016][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:09.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:09.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.021][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:09.023][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:09.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.025][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:09.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:09.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.032][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:09.033][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:09.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.035][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:09.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:09.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.042][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:09.043][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:09.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.046][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.047][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:09.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:09.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.052][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-05-24 16:03:09.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:09.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:09.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:09.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:09.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:09.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.067][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-05-24 16:03:09.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:09.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:09.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:09.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:09.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:09.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.082][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-05-24 16:03:09.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:09.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:09.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:09.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:09.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:09.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.099][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-05-24 16:03:09.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:09.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:09.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:09.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:09.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:09.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.114][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-05-24 16:03:09.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:09.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.119][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:09.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:09.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:09.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:09.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.129][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:09.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:09.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.134][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:09.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:09.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.149][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:09.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:09.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:09.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:09.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:09.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:09.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:09.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:09.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:09.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:09.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:09.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:09.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:09.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:09.184][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:09.185][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:09.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.188][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:09.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:09.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.195][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:09.196][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:09.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.198][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:09.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:09.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.205][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:09.206][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:09.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.209][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:09.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:09.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.215][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:09.216][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:09.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.219][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:09.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:09.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.225][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:09.227][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:09.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.229][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:09.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:09.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.235][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:09.237][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:09.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.239][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:09.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:09.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.246][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:09.247][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:09.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.249][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.251][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:09.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:09.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.256][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:09.257][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:09.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.259][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.261][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:09.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:09.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.267][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:09.268][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:09.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.271][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.272][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:09.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:09.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.277][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:09.279][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:09.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.281][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:09.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:09.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.287][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:09.289][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:09.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.291][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.293][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:09.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:09.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.298][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:09.299][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:09.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.301][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:09.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:09.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.308][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:09.309][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:09.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.311][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.313][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:09.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:09.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.318][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:09.319][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:09.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.322][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.323][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:09.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:09.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.328][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-05-24 16:03:09.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:09.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:09.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:09.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.338][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:09.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:09.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.343][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-05-24 16:03:09.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:09.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:09.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:09.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:09.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:09.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.364][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-05-24 16:03:09.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:09.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:09.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:09.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:09.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:09.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.379][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-05-24 16:03:09.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:09.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:09.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:09.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:09.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:09.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.394][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-05-24 16:03:09.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:09.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.399][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:09.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:09.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.404][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:09.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:09.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.409][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:09.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:09.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:09.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:09.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:09.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:09.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:09.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:09.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:09.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:09.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:09.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:09.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:09.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:09.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:09.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:09.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:09.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:09.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:09.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:09.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:09.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:09.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:09.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:09.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:09.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:09.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:09.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:09.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:09.493][self$createEntryFromContent] Accession numbers: 175625165, 175623244, 175621446.
biodb.DEBUG[2025-05-24 16:03:09.494][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:09.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:09.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:09.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:09.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:09.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:09.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:09.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:09.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.515][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.520][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:09.521][private$selectFields]
biodb.TRACE[2025-05-24 16:03:09.522][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:09.524][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:09.525][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:09.526][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.527][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.530][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.531][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.532][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.534][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.536][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:09.537][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:09.538][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.539][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.542][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.543][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:09.544][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.549][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.554][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.559][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175625165].
biodb.DEBUG[2025-05-24 16:03:09.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:09.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:09.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:09.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:09.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:09.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:09.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:09.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.583][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:09.584][private$selectFields]
biodb.TRACE[2025-05-24 16:03:09.585][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:09.586][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:09.588][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:09.589][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.590][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.592][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.594][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.595][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.597][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.598][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:09.600][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:09.601][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.602][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.604][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.606][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:09.607][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.612][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.622][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175623244].
biodb.DEBUG[2025-05-24 16:03:09.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:09.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:09.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:09.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:09.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:09.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:09.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:09.636][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.641][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.646][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:09.647][private$selectFields]
biodb.TRACE[2025-05-24 16:03:09.648][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:09.649][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:09.651][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:09.652][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.653][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.655][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.657][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.658][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.660][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.661][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:09.663][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:09.664][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.665][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.667][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.669][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:09.670][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:09.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.685][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175621446].
biodb.DEBUG[2025-05-24 16:03:09.686][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:09.687][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-05-24 16:03:09.698][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-05-24 16:03:09.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-05-24 16:03:09.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.703][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-05-24 16:03:09.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-05-24 16:03:09.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-05-24 16:03:09.712][biodb::testThat]
biodb.INFO [2025-05-24 16:03:09.714][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-05-24 16:03:09.715][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:03:09.716][biodb::testThat]
biodb.TRACE[2025-05-24 16:03:09.719][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-05-24 16:03:09.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-05-24 16:03:09.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.724][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-05-24 16:03:09.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-05-24 16:03:09.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:09.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:09.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:09.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:09.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:09.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:09.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:09.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:09.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:09.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:09.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:09.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:09.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:09.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:09.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:09.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:09.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:09.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:09.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:09.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:09.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:09.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:09.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:09.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:09.798][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364:204.2430636[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:09.802][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:09.804][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aa9cb23a1eb4b2596e7c242b1c35f744".
biodb.TRACE[2025-05-24 16:03:09.805][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:09.807][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/aa9cb23a1eb4b2596e7c242b1c35f744.content".
biodb.DEBUG[2025-05-24 16:03:09.809][private$loadEntries] Creating entries from ids [2]: "175611905, 175601431".
biodb.DEBUG[2025-05-24 16:03:09.810][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-05-24 16:03:09.812][cch$loadFileContent] Trying to load 2 files from cache: [2]: "175611905, 175601431".
biodb.TRACE[2025-05-24 16:03:09.814][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2025-05-24 16:03:09.820][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/175611905.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/175601431.xml".
biodb.DEBUG[2025-05-24 16:03:09.821][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-05-24 16:03:09.823][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-05-24 16:03:09.824][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-05-24 16:03:09.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:09.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:09.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:09.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:09.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:09.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:09.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:09.841][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:09.843][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:09.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.845][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:09.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:09.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.852][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:09.854][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:09.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.856][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:09.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:09.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.863][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:09.864][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:09.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.867][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:09.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:09.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.874][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:09.875][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:09.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.877][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:09.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:09.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.884][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:09.885][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:09.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.888][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:09.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:09.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.894][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:09.896][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:09.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.898][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:09.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:09.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.905][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:09.906][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:09.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.908][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.910][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:09.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:09.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.916][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:09.917][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:09.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.919][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.921][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:09.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:09.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.926][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:09.927][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:09.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.929][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:09.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:09.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.936][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:09.937][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:09.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.940][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:09.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:09.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.946][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:09.948][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:09.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.950][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.952][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:09.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:09.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.957][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:09.958][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:09.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.960][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:09.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:09.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.970][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:09.971][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:09.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.973][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.975][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:09.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:09.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.980][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:09.981][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:09.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.983][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.985][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:09.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:09.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.990][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-05-24 16:03:09.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:09.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:09.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:09.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:09.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:09.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:10.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:10.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.009][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-05-24 16:03:10.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:10.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:10.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:10.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:10.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:10.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.024][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-05-24 16:03:10.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:10.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:10.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:10.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:10.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:10.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.039][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-05-24 16:03:10.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:10.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.044][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:10.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:10.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:10.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:10.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.054][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-05-24 16:03:10.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:10.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.059][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:10.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:10.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:10.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:10.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.068][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:10.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:10.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.073][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.078][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:10.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:10.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:10.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:10.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:10.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:10.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:10.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:10.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:10.108][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:10.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:10.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:10.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:10.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:10.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:10.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:10.123][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:10.124][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:10.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.126][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:10.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:10.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.133][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:10.134][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:10.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.136][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:10.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:10.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.143][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:10.144][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:10.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.146][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:10.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:10.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.153][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:10.154][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:10.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.157][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:10.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:10.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.163][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:10.164][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:10.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.167][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:10.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:10.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.173][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:10.175][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:10.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.177][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.178][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:10.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:10.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.183][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:10.185][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:10.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.187][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.189][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:10.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:10.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.194][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:10.195][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:10.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.197][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.199][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:10.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:10.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.204][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:10.205][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:10.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.207][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:10.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:10.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.220][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:10.221][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:10.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.224][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:10.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:10.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.230][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:10.231][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:10.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.234][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.235][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:10.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:10.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.240][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:10.242][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:10.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.244][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:10.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:10.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.251][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:10.252][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:10.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.254][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.256][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:10.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:10.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.261][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:10.262][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:10.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.265][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.266][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:10.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:10.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.271][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-05-24 16:03:10.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:10.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.276][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:10.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:10.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.281][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:10.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:10.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.286][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-05-24 16:03:10.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:10.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:10.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:10.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:10.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:10.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.301][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-05-24 16:03:10.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:10.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:10.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:10.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:10.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:10.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.316][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-05-24 16:03:10.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:10.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:10.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:10.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:10.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:10.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.330][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-05-24 16:03:10.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:10.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.335][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:10.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:10.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:10.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:10.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.345][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:10.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:10.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.355][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:10.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:10.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:10.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:10.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:10.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:10.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:10.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:10.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:10.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:10.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:10.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:10.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:10.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:10.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:10.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:10.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:10.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:10.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:10.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:10.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:10.415][self$createEntryFromContent] Accession numbers: 175611905, 175601431.
biodb.DEBUG[2025-05-24 16:03:10.416][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:10.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:10.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:10.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:10.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:10.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:10.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:10.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:10.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.436][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.441][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:10.442][private$selectFields]
biodb.TRACE[2025-05-24 16:03:10.443][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:10.445][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:10.446][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:10.447][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.448][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.451][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.452][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.453][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.456][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.457][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:10.458][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:10.459][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.461][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.463][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.464][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:10.465][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.470][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.475][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.481][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175637135].
biodb.DEBUG[2025-05-24 16:03:10.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:10.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:10.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:10.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:10.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:10.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:10.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:10.495][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.505][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:10.506][private$selectFields]
biodb.TRACE[2025-05-24 16:03:10.507][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:10.509][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:10.510][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:10.511][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.512][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.515][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.516][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.517][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.520][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.521][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:10.522][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:10.523][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.525][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.527][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.528][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:10.529][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.534][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.539][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.545][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175611905].
biodb.DEBUG[2025-05-24 16:03:10.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:10.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:10.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:10.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:10.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:10.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:10.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:10.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.569][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:10.570][private$selectFields]
biodb.TRACE[2025-05-24 16:03:10.571][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:10.572][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:10.573][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:10.575][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.576][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.578][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.579][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.581][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.583][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.584][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:10.585][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:10.587][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.588][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.590][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.592][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:10.593][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.603][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:10.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:10.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:10.608][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175601431].
biodb.DEBUG[2025-05-24 16:03:10.609][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:10.611][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:10.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:10.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:10.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:10.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:10.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:10.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:10.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:10.639][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715:226.19339285[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:10.643][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-05-24 16:03:10.645][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-05-24 16:03:10.647][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-05-24 16:03:10.704][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-05-24 16:03:10.705][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-05-24 16:03:10.707][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-05-24 16:03:10.709][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-05-24 16:03:10.988][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-05-24 16:03:10.990][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.content"
biodb.TRACE[2025-05-24 16:03:10.995][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.request"
biodb.DEBUG[2025-05-24 16:03:10.998][private$loadEntries] Creating entries from ids [2]: "175577476, 175549793".
biodb.DEBUG[2025-05-24 16:03:10.999][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-05-24 16:03:11.001][cch$loadFileContent] Trying to load 2 files from cache: [2]: "175577476, 175549793".
biodb.TRACE[2025-05-24 16:03:11.003][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-05-24 16:03:11.004][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-05-24 16:03:11.005][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-05-24 16:03:11.006][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-05-24 16:03:11.008][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-05-24 16:03:11.009][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-05-24 16:03:11.010][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-05-24 16:03:11.012][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/175577476,175549793/XML".
biodb.DEBUG[2025-05-24 16:03:11.015][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-05-24 16:03:11.016][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-05-24 16:03:11.018][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/175577476,175549793/XML".
biodb.TRACE[2025-05-24 16:03:11.118][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/175577476,175549793/XML).
biodb.TRACE[2025-05-24 16:03:11.270][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/175577476.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/175549793.xml"
biodb.DEBUG[2025-05-24 16:03:11.273][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-05-24 16:03:11.274][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-05-24 16:03:11.276][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-05-24 16:03:11.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:11.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:11.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:11.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:11.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:11.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:11.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:11.293][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:11.295][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:11.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.297][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:11.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:11.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.303][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:11.305][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:11.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.307][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:11.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:11.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.314][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:11.315][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:11.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.317][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.319][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:11.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:11.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.324][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:11.325][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:11.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.328][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.329][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:11.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:11.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.334][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:11.336][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:11.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.338][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:11.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:11.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.344][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:11.346][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:11.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.348][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:11.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:11.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.355][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:11.356][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:11.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.358][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.360][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:11.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:11.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.365][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:11.366][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:11.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.369][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.370][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:11.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:11.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.375][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:11.376][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:11.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.379][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.380][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:11.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:11.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.386][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:11.387][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:11.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.389][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.391][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:11.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:11.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.396][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:11.397][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:11.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.399][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.401][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:11.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:11.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.406][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:11.407][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:11.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.410][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:11.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:11.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.416][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:11.418][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:11.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.420][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.421][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:11.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:11.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.426][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:11.428][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:11.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.430][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.432][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:11.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:11.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.437][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-05-24 16:03:11.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:11.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:11.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:11.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:11.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:11.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.451][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-05-24 16:03:11.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:11.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:11.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:11.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:11.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:11.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.466][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-05-24 16:03:11.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:11.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:11.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:11.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:11.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:11.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.481][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-05-24 16:03:11.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:11.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.486][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:11.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:11.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.491][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:11.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:11.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.496][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-05-24 16:03:11.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:11.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:11.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:11.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.506][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:11.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:11.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.510][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:11.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:11.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.515][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.520][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:11.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:11.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.530][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:11.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:11.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:11.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:11.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:11.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:11.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:11.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:11.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:11.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:11.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:11.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:11.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:11.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:11.565][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:11.566][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:11.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.569][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:11.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:11.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.575][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:11.576][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:11.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.579][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:11.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:11.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.585][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:11.587][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:11.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.589][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:11.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:11.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.596][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:11.597][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:11.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.599][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:11.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:11.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.606][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:11.607][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:11.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.610][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:11.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:11.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.616][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:11.617][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:11.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.620][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.622][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:11.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:11.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.627][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:11.628][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:11.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.630][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.632][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:11.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:11.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.642][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:11.648][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:11.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.651][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.653][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:11.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:11.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.658][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:11.659][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:11.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.662][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:11.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:11.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.668][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:11.669][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:11.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.672][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:11.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:11.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.678][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:11.680][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:11.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.682][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.684][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:11.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:11.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.689][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:11.690][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:11.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.693][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:11.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:11.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.699][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:11.701][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:11.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.703][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.705][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:11.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:11.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.710][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:11.711][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:11.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.713][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.715][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:11.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:11.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.720][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-05-24 16:03:11.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:11.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:11.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:11.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:11.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:11.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.735][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-05-24 16:03:11.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:11.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.740][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:11.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:11.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:11.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:11.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.749][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-05-24 16:03:11.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:11.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:11.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:11.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:11.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:11.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.764][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-05-24 16:03:11.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:11.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:11.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:11.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:11.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:11.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.779][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-05-24 16:03:11.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:11.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.784][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:11.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:11.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:11.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:11.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.794][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:11.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:11.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.799][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.804][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:11.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:11.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.815][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:11.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:11.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:11.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:11.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:11.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:11.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:11.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:11.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:11.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:11.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:11.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:11.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:11.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:11.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:11.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:11.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:11.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:11.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:11.864][self$createEntryFromContent] Accession numbers: 175577476, 175549793.
biodb.DEBUG[2025-05-24 16:03:11.866][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:11.868][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:11.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:11.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:11.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:11.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:11.878][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:11.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:11.880][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.890][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:11.891][private$selectFields]
biodb.TRACE[2025-05-24 16:03:11.893][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:11.894][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:11.895][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:11.896][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.897][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.900][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.901][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.902][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.905][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.906][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:11.907][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:11.908][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.910][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.912][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.913][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:11.914][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.919][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.929][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175610581].
biodb.DEBUG[2025-05-24 16:03:11.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:11.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:11.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:11.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:11.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:11.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:11.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:11.944][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.949][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.954][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:11.955][private$selectFields]
biodb.TRACE[2025-05-24 16:03:11.956][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:11.957][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:11.958][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:11.960][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.961][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.963][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.964][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.966][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.968][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.969][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:11.970][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:11.971][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.973][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.975][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.976][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:11.978][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.982][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.987][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:11.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:11.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:11.992][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175577476].
biodb.DEBUG[2025-05-24 16:03:11.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:11.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:11.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:12.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:12.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:12.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:12.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:12.006][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.016][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:12.017][private$selectFields]
biodb.TRACE[2025-05-24 16:03:12.018][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:12.020][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:12.021][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:12.022][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.023][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.026][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.027][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.028][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.031][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.032][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:12.033][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:12.034][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.035][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.038][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.039][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:12.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.045][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.050][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.055][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175549793].
biodb.DEBUG[2025-05-24 16:03:12.056][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:12.058][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-05-24 16:03:12.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:12.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:12.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:12.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:12.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:12.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:12.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:12.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:12.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:12.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:12.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:12.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:12.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:12.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:12.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:12.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:12.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:12.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:12.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:12.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:12.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:12.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:12.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:12.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:12.136][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254:204.126644913746[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:12.140][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:12.142][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3123cd8cb57ce8b130489fc490c416f0".
biodb.TRACE[2025-05-24 16:03:12.144][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:12.145][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/3123cd8cb57ce8b130489fc490c416f0.content".
biodb.DEBUG[2025-05-24 16:03:12.147][private$loadEntries] Creating entries from ids [2]: "175634886, 175631317".
biodb.DEBUG[2025-05-24 16:03:12.149][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-05-24 16:03:12.151][cch$loadFileContent] Trying to load 2 files from cache: [2]: "175634886, 175631317".
biodb.TRACE[2025-05-24 16:03:12.152][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2025-05-24 16:03:12.155][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/175634886.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/175631317.xml".
biodb.DEBUG[2025-05-24 16:03:12.156][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-05-24 16:03:12.158][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-05-24 16:03:12.159][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-05-24 16:03:12.161][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:12.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:12.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:12.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:12.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:12.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:12.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:12.176][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:12.177][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:12.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.180][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:12.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:12.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.186][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:12.187][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:12.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.190][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.191][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:12.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:12.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.196][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:12.198][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:12.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.200][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:12.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:12.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.207][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:12.208][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:12.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.210][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:12.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:12.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.217][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:12.218][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:12.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.221][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:12.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:12.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.227][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:12.228][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:12.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.231][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.232][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:12.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:12.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.238][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:12.241][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:12.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.243][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.245][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:12.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:12.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.250][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:12.253][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:12.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.256][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.257][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:12.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:12.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.267][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:12.268][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:12.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.270][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.272][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:12.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:12.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.277][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:12.278][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:12.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.281][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:12.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:12.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.287][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:12.289][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:12.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.291][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.293][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:12.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:12.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.298][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:12.299][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:12.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.302][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:12.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:12.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.308][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:12.310][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:12.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.312][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.314][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:12.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:12.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.319][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:12.320][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:12.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.322][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.324][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:12.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:12.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.329][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-05-24 16:03:12.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:12.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:12.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:12.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:12.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:12.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.344][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-05-24 16:03:12.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:12.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:12.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:12.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:12.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:12.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.359][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-05-24 16:03:12.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:12.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:12.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:12.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:12.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:12.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.376][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-05-24 16:03:12.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:12.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:12.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:12.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:12.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:12.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.391][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-05-24 16:03:12.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:12.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:12.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:12.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.418][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:12.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:12.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.432][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:12.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:12.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.437][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:12.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:12.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.484][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:12.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:12.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:12.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:12.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:12.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:12.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:12.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:12.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:12.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:12.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:12.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:12.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:12.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:12.530][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:12.531][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:12.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.534][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:12.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:12.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.540][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:12.542][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:12.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.544][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:12.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:12.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.551][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:12.552][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:12.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.554][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:12.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:12.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.561][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:12.562][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:12.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.565][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.566][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:12.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:12.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.578][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:12.580][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:12.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.582][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:12.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:12.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.589][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:12.590][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:12.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.592][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:12.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:12.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.599][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:12.601][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:12.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.603][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.605][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:12.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:12.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.610][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:12.611][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:12.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.613][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.615][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:12.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:12.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.620][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:12.621][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:12.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.624][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:12.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:12.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.630][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:12.632][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:12.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.634][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:12.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:12.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.641][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:12.642][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:12.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.644][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.646][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:12.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:12.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.651][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:12.652][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:12.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.655][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:12.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:12.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.661][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:12.663][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:12.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.665][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.667][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:12.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:12.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.672][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:12.673][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:12.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.675][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.677][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:12.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:12.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.682][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-05-24 16:03:12.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:12.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:12.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:12.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.692][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:12.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:12.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.697][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-05-24 16:03:12.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:12.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:12.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:12.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:12.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:12.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.712][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-05-24 16:03:12.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:12.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:12.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:12.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:12.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:12.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.728][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-05-24 16:03:12.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:12.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:12.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:12.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:12.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:12.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.743][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-05-24 16:03:12.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:12.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:12.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:12.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.753][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:12.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:12.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.758][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:12.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:12.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.763][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.768][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:12.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:12.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.778][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:12.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:12.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:12.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:12.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:12.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:12.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:12.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:12.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:12.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:12.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:12.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:12.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:12.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:12.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:12.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:12.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:12.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:12.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:12.829][self$createEntryFromContent] Accession numbers: 175634886, 175631317.
biodb.DEBUG[2025-05-24 16:03:12.831][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:12.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:12.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:12.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:12.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:12.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:12.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:12.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:12.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.857][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:12.858][private$selectFields]
biodb.TRACE[2025-05-24 16:03:12.859][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:12.860][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:12.861][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:12.863][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.864][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.866][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.868][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.869][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.871][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.872][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:12.874][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:12.875][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.876][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.879][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.880][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:12.881][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.886][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.891][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.896][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175639468].
biodb.DEBUG[2025-05-24 16:03:12.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:12.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:12.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:12.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:12.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:12.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:12.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:12.911][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.916][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.921][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:12.922][private$selectFields]
biodb.TRACE[2025-05-24 16:03:12.923][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:12.924][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:12.926][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:12.927][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.928][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.930][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.932][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.933][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.935][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.937][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:12.938][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:12.939][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.940][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.943][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.944][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:12.945][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.950][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.955][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.961][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175634886].
biodb.DEBUG[2025-05-24 16:03:12.962][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:12.963][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:12.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:12.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:12.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:12.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:12.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:12.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:12.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:12.985][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:12.986][private$selectFields]
biodb.TRACE[2025-05-24 16:03:12.987][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:12.989][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:12.990][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:12.991][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.992][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:12.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.000][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.002][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.004][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.006][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.008][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:13.009][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:13.010][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.011][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.014][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.015][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:13.016][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.022][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.027][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.032][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175631317].
biodb.DEBUG[2025-05-24 16:03:13.033][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:13.035][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:13.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:13.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:13.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:13.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:13.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:13.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:13.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:13.057][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429:226.062362304571[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:13.062][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-05-24 16:03:13.063][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-05-24 16:03:13.065][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-05-24 16:03:13.121][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-05-24 16:03:13.123][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-05-24 16:03:13.125][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-05-24 16:03:13.126][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-05-24 16:03:13.229][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-05-24 16:03:13.232][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.content"
biodb.TRACE[2025-05-24 16:03:13.236][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.request"
biodb.DEBUG[2025-05-24 16:03:13.239][private$loadEntries] Creating entries from ids [1]: "175617789".
biodb.DEBUG[2025-05-24 16:03:13.241][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2025-05-24 16:03:13.243][cch$loadFileContent] Trying to load 1 files from cache: [1]: "175617789".
biodb.TRACE[2025-05-24 16:03:13.244][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-05-24 16:03:13.246][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-05-24 16:03:13.247][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-05-24 16:03:13.248][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-05-24 16:03:13.250][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-05-24 16:03:13.251][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-05-24 16:03:13.252][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2025-05-24 16:03:13.254][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/175617789/XML".
biodb.DEBUG[2025-05-24 16:03:13.257][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-05-24 16:03:13.259][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-05-24 16:03:13.260][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/175617789/XML".
biodb.TRACE[2025-05-24 16:03:13.331][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/175617789/XML).
biodb.TRACE[2025-05-24 16:03:13.424][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/175617789.xml"
biodb.DEBUG[2025-05-24 16:03:13.426][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-05-24 16:03:13.428][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-05-24 16:03:13.429][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-05-24 16:03:13.431][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:13.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:13.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:13.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:13.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:13.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:13.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:13.447][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:13.448][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:13.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.451][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:13.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:13.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.457][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:13.459][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:13.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.461][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.463][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:13.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:13.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.468][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:13.469][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:13.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.471][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:13.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:13.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.478][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:13.479][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:13.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.482][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:13.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:13.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.488][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:13.490][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:13.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.492][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.494][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:13.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:13.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.499][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:13.500][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:13.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.503][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:13.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:13.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.509][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:13.511][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:13.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.513][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.515][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:13.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:13.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.520][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:13.521][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:13.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.523][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.525][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:13.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:13.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.530][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:13.532][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:13.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.534][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:13.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:13.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.541][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:13.542][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:13.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.544][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.546][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:13.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:13.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.551][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:13.553][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:13.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.555][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.556][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:13.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:13.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.562][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:13.563][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:13.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.565][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:13.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:13.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.572][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:13.573][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:13.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.576][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.577][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:13.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:13.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.582][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:13.584][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:13.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.586][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.587][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:13.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:13.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.592][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-05-24 16:03:13.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:13.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:13.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:13.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:13.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:13.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.607][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-05-24 16:03:13.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:13.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:13.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:13.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:13.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:13.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.622][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-05-24 16:03:13.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:13.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:13.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:13.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:13.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:13.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.637][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-05-24 16:03:13.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:13.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:13.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:13.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:13.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:13.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.652][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-05-24 16:03:13.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:13.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:13.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:13.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:13.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:13.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.667][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:13.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:13.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.672][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.677][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:13.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:13.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:13.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:13.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:13.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:13.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:13.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:13.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:13.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:13.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:13.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:13.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:13.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:13.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:13.723][self$createEntryFromContent] Accession numbers: 175617789.
biodb.DEBUG[2025-05-24 16:03:13.724][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:13.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:13.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:13.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:13.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:13.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:13.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:13.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:13.751][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.757][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.762][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:13.763][private$selectFields]
biodb.TRACE[2025-05-24 16:03:13.764][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:13.765][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:13.766][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:13.767][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.769][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.771][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.772][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.774][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.776][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.778][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:13.779][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:13.780][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.781][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.784][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.785][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:13.786][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.801][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175625165].
biodb.DEBUG[2025-05-24 16:03:13.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:13.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:13.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:13.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:13.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:13.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:13.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:13.816][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.821][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.826][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:13.827][private$selectFields]
biodb.TRACE[2025-05-24 16:03:13.829][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:13.830][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:13.831][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:13.832][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.834][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.836][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.837][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.839][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.841][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.842][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:13.843][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:13.845][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.846][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.848][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.849][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:13.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.856][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.861][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.866][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175621446].
biodb.DEBUG[2025-05-24 16:03:13.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:13.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:13.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:13.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:13.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:13.878][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:13.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:13.881][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.890][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:13.891][private$selectFields]
biodb.TRACE[2025-05-24 16:03:13.893][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:13.894][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:13.895][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:13.896][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.897][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.900][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.901][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.902][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.905][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.906][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:13.907][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:13.908][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.910][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.912][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.913][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:13.914][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.919][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:13.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.929][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175617789].
biodb.DEBUG[2025-05-24 16:03:13.931][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:13.932][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-05-24 16:03:13.942][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-05-24 16:03:13.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-05-24 16:03:13.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.947][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-05-24 16:03:13.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-05-24 16:03:13.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-05-24 16:03:13.956][biodb::testThat]
biodb.INFO [2025-05-24 16:03:13.957][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-05-24 16:03:13.958][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:03:13.960][biodb::testThat]
biodb.TRACE[2025-05-24 16:03:13.963][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-05-24 16:03:13.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-05-24 16:03:13.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.968][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-05-24 16:03:13.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-05-24 16:03:13.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:13.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:13.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:13.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:13.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:13.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:13.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:13.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:13.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:13.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:13.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:13.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:13.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:13.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:14.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:14.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:14.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:14.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:14.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:14.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:14.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:14.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:14.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:14.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:14.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:14.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:14.038][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:14.042][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:14.044][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-05-24 16:03:14.045][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:14.047][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-05-24 16:03:14.049][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:14.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:14.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:14.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:14.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:14.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:14.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:14.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:14.064][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.069][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.074][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.075][private$selectFields]
biodb.TRACE[2025-05-24 16:03:14.076][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:14.077][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:14.078][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.080][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.081][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.083][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.085][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.086][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.088][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.089][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.091][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.092][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.093][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.096][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.097][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:14.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.108][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.113][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175637135].
biodb.DEBUG[2025-05-24 16:03:14.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:14.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:14.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:14.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:14.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:14.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:14.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:14.128][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.133][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.138][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.139][private$selectFields]
biodb.TRACE[2025-05-24 16:03:14.140][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:14.141][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:14.142][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.144][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.145][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.147][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.148][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.150][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.152][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.153][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.155][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.156][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.157][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.159][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.161][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:14.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.167][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.184][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175636749].
biodb.DEBUG[2025-05-24 16:03:14.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:14.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:14.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:14.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:14.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:14.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:14.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:14.198][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.203][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.208][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.209][private$selectFields]
biodb.TRACE[2025-05-24 16:03:14.211][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:14.212][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:14.213][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.214][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.216][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.218][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.219][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.221][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.223][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.224][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.226][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.227][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.228][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.230][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.232][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:14.233][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.248][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175622121].
biodb.DEBUG[2025-05-24 16:03:14.250][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:14.251][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:14.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:14.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:14.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:14.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:14.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:14.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:14.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:14.273][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:14.277][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:14.279][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-05-24 16:03:14.280][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:14.282][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-05-24 16:03:14.284][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:14.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:14.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:14.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:14.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:14.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:14.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:14.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:14.299][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.304][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.309][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.310][private$selectFields]
biodb.TRACE[2025-05-24 16:03:14.311][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:14.312][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:14.314][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.315][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.316][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.318][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.320][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.321][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.323][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.325][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.326][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.327][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.328][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.331][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.332][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:14.333][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.338][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.343][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.348][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175614838].
biodb.DEBUG[2025-05-24 16:03:14.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:14.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:14.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:14.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:14.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:14.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:14.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:14.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.368][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.373][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.374][private$selectFields]
biodb.TRACE[2025-05-24 16:03:14.375][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:14.376][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:14.377][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.378][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.380][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.382][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.383][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.385][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.387][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.388][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.389][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.391][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.392][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.394][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.396][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:14.397][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.407][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.412][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175610581].
biodb.DEBUG[2025-05-24 16:03:14.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:14.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:14.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:14.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:14.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:14.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:14.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:14.426][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.436][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.438][private$selectFields]
biodb.TRACE[2025-05-24 16:03:14.439][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:14.440][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:14.441][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.442][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.444][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.446][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.447][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.449][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.451][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.452][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.453][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.455][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.456][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.458][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.460][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:14.461][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.466][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.471][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.476][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175609559].
biodb.DEBUG[2025-05-24 16:03:14.478][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:14.479][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-05-24 16:03:14.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:14.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:14.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:14.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:14.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:14.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:14.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:14.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:14.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:14.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:14.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:14.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:14.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:14.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:14.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:14.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:14.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:14.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:14.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:14.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:14.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:14.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:14.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:14.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:14.569][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:14.573][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:14.575][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-05-24 16:03:14.576][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:14.578][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-05-24 16:03:14.580][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:14.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:14.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:14.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:14.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:14.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:14.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:14.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:14.595][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.607][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.612][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.613][private$selectFields]
biodb.TRACE[2025-05-24 16:03:14.614][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:14.616][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:14.617][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.618][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.620][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.622][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.623][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.625][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.627][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.628][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.629][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.631][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.632][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.634][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.636][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:14.637][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.647][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.652][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175639468].
biodb.DEBUG[2025-05-24 16:03:14.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:14.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:14.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:14.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:14.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:14.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:14.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:14.667][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.672][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.677][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.678][private$selectFields]
biodb.TRACE[2025-05-24 16:03:14.679][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:14.680][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:14.681][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.683][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.684][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.686][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.688][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.689][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.691][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.693][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.694][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.695][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.696][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.699][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.700][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:14.701][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.706][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.716][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175636749].
biodb.DEBUG[2025-05-24 16:03:14.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:14.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:14.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:14.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:14.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:14.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:14.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:14.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.736][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.741][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.742][private$selectFields]
biodb.TRACE[2025-05-24 16:03:14.743][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:14.744][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:14.746][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.747][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.748][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.750][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.752][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.753][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.755][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.757][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.758][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.759][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.760][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.763][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.764][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:14.765][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.770][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.775][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.781][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175636537].
biodb.DEBUG[2025-05-24 16:03:14.782][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:14.783][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:14.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:14.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:14.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:14.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:14.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:14.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:14.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:14.806][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:14.810][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:14.812][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-05-24 16:03:14.813][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:14.815][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-05-24 16:03:14.817][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:14.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:14.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:14.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:14.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:14.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:14.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:14.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:14.832][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.837][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.842][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.843][private$selectFields]
biodb.TRACE[2025-05-24 16:03:14.844][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:14.846][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:14.847][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.848][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.849][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.852][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.853][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.854][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.857][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.858][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.859][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.860][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.862][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.864][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.865][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:14.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.872][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.877][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.882][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175625165].
biodb.DEBUG[2025-05-24 16:03:14.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:14.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:14.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:14.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:14.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:14.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:14.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:14.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.902][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.907][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.908][private$selectFields]
biodb.TRACE[2025-05-24 16:03:14.909][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:14.910][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:14.911][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.913][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.914][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.916][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.918][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.919][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.921][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.923][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.924][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.925][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.926][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.929][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.930][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:14.931][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.936][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.941][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.947][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175623244].
biodb.DEBUG[2025-05-24 16:03:14.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:14.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:14.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:14.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:14.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:14.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:14.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:14.961][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.966][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.971][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.972][private$selectFields]
biodb.TRACE[2025-05-24 16:03:14.973][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:14.975][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:14.976][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.977][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.978][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.981][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.982][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.983][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.986][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.987][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.988][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:14.989][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.991][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.993][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:14.994][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:14.996][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:14.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:14.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.006][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.011][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175621446].
biodb.DEBUG[2025-05-24 16:03:15.012][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:15.013][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-05-24 16:03:15.045][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-05-24 16:03:15.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-05-24 16:03:15.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.050][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-05-24 16:03:15.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-05-24 16:03:15.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.059][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:15.060][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:15.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.063][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.064][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:15.065][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:15.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.068][ef$get] fields variable is a list.
biodb.INFO [2025-05-24 16:03:15.070][biodb::testThat]
biodb.INFO [2025-05-24 16:03:15.071][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-05-24 16:03:15.072][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:03:15.073][biodb::testThat]
biodb.TRACE[2025-05-24 16:03:15.077][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-05-24 16:03:15.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-05-24 16:03:15.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.082][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-05-24 16:03:15.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-05-24 16:03:15.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:15.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:15.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:15.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:15.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:15.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:15.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:15.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:15.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:15.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:15.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:15.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:15.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:15.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:15.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:15.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:15.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:15.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:15.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:15.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:15.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:15.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:15.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:15.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:15.149][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:15.153][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-05-24 16:03:15.155][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-05-24 16:03:15.157][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-05-24 16:03:15.214][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-05-24 16:03:15.215][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-05-24 16:03:15.217][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-05-24 16:03:15.219][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-05-24 16:03:15.287][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-05-24 16:03:15.290][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content"
biodb.TRACE[2025-05-24 16:03:15.295][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.request"
biodb.DEBUG[2025-05-24 16:03:15.297][private$loadEntries] Creating entries from ids [1]: "175634588".
biodb.DEBUG[2025-05-24 16:03:15.299][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2025-05-24 16:03:15.301][cch$loadFileContent] Trying to load 1 files from cache: [1]: "175634588".
biodb.TRACE[2025-05-24 16:03:15.303][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-05-24 16:03:15.304][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-05-24 16:03:15.305][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-05-24 16:03:15.307][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-05-24 16:03:15.308][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-05-24 16:03:15.309][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-05-24 16:03:15.311][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2025-05-24 16:03:15.313][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/175634588/XML".
biodb.DEBUG[2025-05-24 16:03:15.316][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-05-24 16:03:15.317][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-05-24 16:03:15.318][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/175634588/XML".
biodb.TRACE[2025-05-24 16:03:15.391][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/175634588/XML).
biodb.TRACE[2025-05-24 16:03:15.494][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/175634588.xml"
biodb.DEBUG[2025-05-24 16:03:15.497][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-05-24 16:03:15.498][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-05-24 16:03:15.500][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-05-24 16:03:15.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:15.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:15.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:15.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:15.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:15.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:15.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:15.517][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:15.518][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:15.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.520][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:15.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:15.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.527][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:15.528][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:15.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.531][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:15.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:15.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.537][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:15.539][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:15.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.541][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:15.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:15.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.548][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:15.549][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:15.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.552][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.553][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:15.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:15.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.558][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:15.560][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:15.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.562][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.564][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:15.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:15.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.569][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:15.570][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:15.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.572][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:15.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:15.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.579][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:15.581][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:15.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.583][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.585][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:15.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:15.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.590][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:15.591][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:15.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.594][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.595][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:15.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:15.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.600][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:15.602][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:15.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.604][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:15.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:15.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.611][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:15.612][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:15.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.614][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:15.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:15.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.621][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:15.622][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:15.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.625][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.626][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:15.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:15.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.631][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:15.633][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:15.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.635][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:15.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:15.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.642][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:15.643][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:15.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.645][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.647][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:15.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:15.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.652][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:15.653][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:15.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.656][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.657][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:15.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:15.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.662][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-05-24 16:03:15.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:15.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.667][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:15.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:15.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:15.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:15.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.677][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-05-24 16:03:15.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:15.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:15.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:15.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:15.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:15.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.692][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-05-24 16:03:15.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:15.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:15.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:15.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:15.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:15.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.707][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-05-24 16:03:15.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:15.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:15.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:15.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:15.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:15.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.722][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-05-24 16:03:15.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:15.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:15.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:15.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:15.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:15.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.736][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:15.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:15.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.741][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.757][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:15.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:15.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.767][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:15.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:15.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:15.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:15.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:15.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:15.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:15.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:15.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:15.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:15.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:15.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:15.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:15.803][self$createEntryFromContent] Accession numbers: 175634588.
biodb.DEBUG[2025-05-24 16:03:15.804][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:15.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:15.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:15.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:15.814][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:15.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:15.816][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:15.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:15.819][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.824][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.829][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:15.830][private$selectFields]
biodb.TRACE[2025-05-24 16:03:15.831][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:15.832][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:15.834][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:15.835][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.836][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.838][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.840][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.841][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.843][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.845][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:15.846][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:15.847][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.848][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.851][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.852][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:15.853][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.863][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.868][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175637135].
biodb.DEBUG[2025-05-24 16:03:15.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:15.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:15.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:15.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:15.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:15.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:15.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:15.882][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.887][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.892][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:15.893][private$selectFields]
biodb.TRACE[2025-05-24 16:03:15.895][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:15.896][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:15.897][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:15.898][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.899][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.902][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.903][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.904][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.907][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.908][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:15.909][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:15.910][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.912][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.914][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.915][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:15.917][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.921][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.926][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.932][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175636749].
biodb.DEBUG[2025-05-24 16:03:15.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:15.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:15.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:15.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:15.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:15.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:15.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:15.946][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.951][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.956][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:15.958][private$selectFields]
biodb.TRACE[2025-05-24 16:03:15.959][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:15.960][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:15.961][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:15.962][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.964][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.966][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.967][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.968][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.971][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.972][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:15.973][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:15.974][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.976][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.978][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.979][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:15.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:15.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:15.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:15.995][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175634588].
biodb.DEBUG[2025-05-24 16:03:15.997][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:15.998][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:16.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:16.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:16.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:16.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:16.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:16.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:16.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:16.020][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:16.024][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-05-24 16:03:16.025][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-05-24 16:03:16.028][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-05-24 16:03:16.085][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-05-24 16:03:16.086][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-05-24 16:03:16.088][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-05-24 16:03:16.089][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-05-24 16:03:16.154][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-05-24 16:03:16.156][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content"
biodb.TRACE[2025-05-24 16:03:16.161][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.request"
biodb.DEBUG[2025-05-24 16:03:16.164][private$loadEntries] Creating entries from ids [1]: "175633651".
biodb.DEBUG[2025-05-24 16:03:16.165][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2025-05-24 16:03:16.167][cch$loadFileContent] Trying to load 1 files from cache: [1]: "175633651".
biodb.TRACE[2025-05-24 16:03:16.168][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-05-24 16:03:16.170][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-05-24 16:03:16.171][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-05-24 16:03:16.172][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-05-24 16:03:16.174][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-05-24 16:03:16.175][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-05-24 16:03:16.176][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2025-05-24 16:03:16.178][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/175633651/XML".
biodb.DEBUG[2025-05-24 16:03:16.181][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-05-24 16:03:16.182][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-05-24 16:03:16.184][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/175633651/XML".
biodb.TRACE[2025-05-24 16:03:16.270][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/175633651/XML).
biodb.TRACE[2025-05-24 16:03:16.363][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/175633651.xml"
biodb.DEBUG[2025-05-24 16:03:16.365][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-05-24 16:03:16.366][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-05-24 16:03:16.368][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-05-24 16:03:16.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:16.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:16.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:16.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:16.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:16.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:16.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:16.384][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:16.386][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:16.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.388][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:16.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:16.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.395][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:16.396][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:16.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.398][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:16.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:16.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.405][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:16.406][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:16.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.409][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:16.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:16.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.415][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:16.417][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:16.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.419][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.420][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:16.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:16.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.426][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:16.427][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:16.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.429][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.431][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:16.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:16.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.436][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:16.437][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:16.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.439][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:16.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:16.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.446][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:16.447][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:16.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.450][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.451][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:16.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:16.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.457][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:16.464][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:16.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.471][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.473][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:16.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:16.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.479][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:16.480][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:16.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.482][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:16.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:16.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.489][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:16.490][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:16.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.493][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:16.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:16.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.499][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:16.501][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:16.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.503][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.505][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:16.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:16.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.510][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:16.511][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:16.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.513][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:16.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:16.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.520][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:16.521][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:16.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.524][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.525][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:16.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:16.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.530][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:16.532][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:16.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.534][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.536][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:16.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:16.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.541][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-05-24 16:03:16.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:16.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:16.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:16.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:16.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:16.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.556][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-05-24 16:03:16.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:16.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.561][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:16.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:16.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.566][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:16.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:16.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.571][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-05-24 16:03:16.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:16.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.576][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:16.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:16.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:16.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:16.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.586][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-05-24 16:03:16.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:16.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:16.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:16.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:16.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:16.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.601][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-05-24 16:03:16.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:16.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:16.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:16.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:16.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:16.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.616][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:16.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:16.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.626][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:16.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:16.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.636][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:16.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:16.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:16.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:16.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:16.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:16.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:16.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:16.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:16.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:16.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:16.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:16.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:16.670][self$createEntryFromContent] Accession numbers: 175633651.
biodb.DEBUG[2025-05-24 16:03:16.672][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:16.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:16.675][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:16.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:16.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:16.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:16.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:16.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:16.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.692][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.697][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:16.698][private$selectFields]
biodb.TRACE[2025-05-24 16:03:16.699][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:16.700][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:16.701][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:16.703][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.704][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.706][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.708][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.709][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.711][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.713][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:16.714][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:16.715][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.717][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.719][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.720][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:16.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.727][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.732][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.737][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175633651].
biodb.DEBUG[2025-05-24 16:03:16.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:16.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:16.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:16.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:16.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:16.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:16.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:16.752][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.757][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.762][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:16.763][private$selectFields]
biodb.TRACE[2025-05-24 16:03:16.764][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:16.766][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:16.767][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:16.768][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.769][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.772][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.773][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.774][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.777][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.778][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:16.779][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:16.781][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.782][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.784][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.786][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:16.787][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.792][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.797][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.802][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175617789].
biodb.DEBUG[2025-05-24 16:03:16.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:16.805][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:16.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:16.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:16.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:16.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:16.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:16.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.822][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.827][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:16.828][private$selectFields]
biodb.TRACE[2025-05-24 16:03:16.829][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:16.830][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:16.831][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:16.833][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.834][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.836][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.838][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.839][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.841][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.843][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:16.844][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:16.845][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.846][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.849][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.850][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:16.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.856][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.861][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.867][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175614838].
biodb.DEBUG[2025-05-24 16:03:16.868][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:16.869][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:16.902][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:16.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:16.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:16.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:16.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:16.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:16.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:16.923][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:16.927][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:16.929][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-05-24 16:03:16.930][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:16.932][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-05-24 16:03:16.934][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:16.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:16.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:16.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:16.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:16.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:16.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:16.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:16.949][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.955][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.960][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:16.961][private$selectFields]
biodb.TRACE[2025-05-24 16:03:16.962][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:16.963][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:16.964][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:16.966][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.967][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.969][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.971][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.972][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.974][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.976][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:16.977][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:16.978][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.980][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.982][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.983][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:16.984][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:16.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:16.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:16.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.000][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175637135].
biodb.DEBUG[2025-05-24 16:03:17.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:17.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:17.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:17.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:17.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:17.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:17.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:17.014][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.019][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.024][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:17.025][private$selectFields]
biodb.TRACE[2025-05-24 16:03:17.026][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:17.028][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:17.029][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:17.030][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.032][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.034][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.035][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.037][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.039][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.040][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:17.042][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:17.043][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.045][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.048][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.049][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:17.051][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.061][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.067][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175636749].
biodb.DEBUG[2025-05-24 16:03:17.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:17.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:17.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:17.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:17.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:17.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:17.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:17.083][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.093][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:17.094][private$selectFields]
biodb.TRACE[2025-05-24 16:03:17.095][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:17.097][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:17.098][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:17.099][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.100][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.103][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.104][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.105][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.108][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.109][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:17.110][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:17.112][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.113][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.115][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.117][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:17.118][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.123][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.128][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.134][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175622121].
biodb.DEBUG[2025-05-24 16:03:17.135][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:17.136][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:17.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:17.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:17.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:17.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:17.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:17.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:17.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:17.159][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:17.163][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:17.165][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-05-24 16:03:17.166][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:17.168][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-05-24 16:03:17.170][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:17.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:17.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:17.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:17.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:17.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:17.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:17.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:17.185][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.190][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.195][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:17.196][private$selectFields]
biodb.TRACE[2025-05-24 16:03:17.197][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:17.199][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:17.200][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:17.201][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.202][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.205][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.206][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.207][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.210][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.211][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:17.212][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:17.213][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.215][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.217][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.218][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:17.220][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.230][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.235][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175614838].
biodb.DEBUG[2025-05-24 16:03:17.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:17.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:17.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:17.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:17.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:17.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:17.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:17.250][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.255][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.260][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:17.261][private$selectFields]
biodb.TRACE[2025-05-24 16:03:17.262][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:17.263][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:17.264][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:17.266][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.267][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.269][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.270][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.272][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.274][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.275][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:17.277][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:17.278][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.279][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.281][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.283][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:17.284][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.294][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.300][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175610581].
biodb.DEBUG[2025-05-24 16:03:17.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:17.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:17.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:17.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:17.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:17.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:17.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:17.314][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.337][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:17.339][private$selectFields]
biodb.TRACE[2025-05-24 16:03:17.340][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:17.341][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:17.342][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:17.344][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.345][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.347][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.349][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.350][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.352][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.354][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:17.355][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:17.356][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.357][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.360][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.361][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:17.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.372][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:17.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.378][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175609559].
biodb.DEBUG[2025-05-24 16:03:17.379][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:17.380][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:17.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:17.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:17.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:17.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:17.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:17.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:17.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:17.427][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:17.431][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-05-24 16:03:17.432][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-05-24 16:03:17.434][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-05-24 16:03:17.491][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-05-24 16:03:17.492][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-05-24 16:03:17.494][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-05-24 16:03:17.496][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-05-24 16:03:17.710][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-05-24 16:03:17.712][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content"
biodb.TRACE[2025-05-24 16:03:17.718][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.request"
biodb.DEBUG[2025-05-24 16:03:17.722][private$loadEntries] Creating entries from ids [2]: "175639353, 175639339".
biodb.DEBUG[2025-05-24 16:03:17.724][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-05-24 16:03:17.726][cch$loadFileContent] Trying to load 2 files from cache: [2]: "175639353, 175639339".
biodb.TRACE[2025-05-24 16:03:17.727][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-05-24 16:03:17.729][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-05-24 16:03:17.730][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-05-24 16:03:17.731][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-05-24 16:03:17.733][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-05-24 16:03:17.734][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-05-24 16:03:17.735][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-05-24 16:03:17.737][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/175639353,175639339/XML".
biodb.DEBUG[2025-05-24 16:03:17.740][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-05-24 16:03:17.742][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-05-24 16:03:17.744][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/175639353,175639339/XML".
biodb.TRACE[2025-05-24 16:03:17.831][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/175639353,175639339/XML).
biodb.TRACE[2025-05-24 16:03:17.940][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/175639353.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/175639339.xml"
biodb.DEBUG[2025-05-24 16:03:17.943][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-05-24 16:03:17.944][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-05-24 16:03:17.946][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-05-24 16:03:17.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:17.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:17.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:17.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:17.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:17.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:17.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:17.963][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:17.965][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:17.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.967][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:17.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:17.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.974][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:17.975][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:17.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.977][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.979][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:17.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:17.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.984][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:17.985][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:17.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.987][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:17.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:17.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.994][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:17.995][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:17.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:17.998][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:17.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:18.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:18.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.004][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:18.005][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:18.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.008][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.009][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:18.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:18.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.014][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:18.016][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:18.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.018][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:18.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:18.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.024][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:18.026][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:18.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.028][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.030][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:18.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:18.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.035][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:18.036][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:18.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.038][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.040][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:18.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:18.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.045][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:18.046][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:18.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.048][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:18.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:18.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.055][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:18.056][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:18.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.058][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:18.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:18.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.065][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:18.066][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:18.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.069][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.070][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:18.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:18.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.075][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:18.076][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:18.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.079][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:18.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:18.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.085][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:18.086][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:18.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.089][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.090][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:18.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:18.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.095][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:18.097][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:18.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.099][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.100][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:18.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:18.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.105][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-05-24 16:03:18.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:18.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.110][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:18.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:18.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.115][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:18.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:18.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.120][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-05-24 16:03:18.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:18.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:18.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:18.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:18.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:18.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.135][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-05-24 16:03:18.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:18.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:18.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:18.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:18.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:18.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.149][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-05-24 16:03:18.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:18.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:18.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:18.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:18.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:18.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.164][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-05-24 16:03:18.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:18.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:18.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:18.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:18.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:18.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.179][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:18.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:18.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.184][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.189][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:18.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:18.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.199][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:18.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:18.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:18.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:18.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:18.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:18.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:18.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:18.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:18.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:18.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:18.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:18.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:18.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:18.244][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:18.246][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:18.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.248][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:18.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:18.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.254][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:18.256][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:18.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.258][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:18.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:18.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.265][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:18.266][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:18.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.268][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:18.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:18.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.275][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:18.276][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:18.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.279][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:18.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:18.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.286][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:18.287][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:18.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.290][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:18.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:18.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.297][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:18.298][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:18.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.300][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:18.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:18.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.307][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:18.308][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:18.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.311][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.312][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:18.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:18.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.318][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:18.319][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:18.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.321][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.323][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:18.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:18.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.328][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:18.329][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:18.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.332][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.333][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:18.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:18.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.338][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:18.340][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:18.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.342][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:18.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:18.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.349][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:18.350][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:18.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.352][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.354][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:18.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:18.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.359][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:18.361][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:18.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.363][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:18.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:18.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.370][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:18.371][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:18.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.374][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.376][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:18.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:18.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.381][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:18.382][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:18.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.385][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.386][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:18.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:18.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.392][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-05-24 16:03:18.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:18.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:18.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:18.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:18.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:18.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.407][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-05-24 16:03:18.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:18.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:18.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:18.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:18.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:18.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.423][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-05-24 16:03:18.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:18.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:18.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:18.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:18.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:18.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.438][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-05-24 16:03:18.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:18.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:18.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:18.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:18.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:18.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.453][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-05-24 16:03:18.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:18.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:18.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:18.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.463][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:18.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:18.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.468][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:18.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:18.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.473][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.478][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:18.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:18.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:18.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:18.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:18.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:18.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:18.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:18.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:18.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:18.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:18.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:18.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:18.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:18.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:18.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:18.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:18.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:18.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:18.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:18.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:18.538][self$createEntryFromContent] Accession numbers: 175639353, 175639339.
biodb.DEBUG[2025-05-24 16:03:18.539][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:18.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:18.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:18.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:18.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:18.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:18.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:18.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:18.554][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.564][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:18.565][private$selectFields]
biodb.TRACE[2025-05-24 16:03:18.567][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:18.568][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:18.569][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:18.570][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.571][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.574][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.575][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.576][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.579][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.580][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:18.581][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:18.582][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.584][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.586][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.587][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:18.589][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.593][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.604][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175639468].
biodb.DEBUG[2025-05-24 16:03:18.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:18.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:18.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:18.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:18.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:18.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:18.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:18.618][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.623][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.628][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:18.629][private$selectFields]
biodb.TRACE[2025-05-24 16:03:18.631][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:18.632][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:18.633][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:18.634][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.636][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.638][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.639][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.641][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.643][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.650][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:18.652][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:18.654][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.655][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.658][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.660][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:18.661][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.666][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.671][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.677][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175639353].
biodb.DEBUG[2025-05-24 16:03:18.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:18.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:18.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:18.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:18.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:18.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:18.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:18.691][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.696][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.701][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:18.702][private$selectFields]
biodb.TRACE[2025-05-24 16:03:18.703][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:18.704][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:18.705][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:18.707][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.708][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.710][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.712][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.713][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.715][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.716][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:18.718][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:18.719][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.720][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.722][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.724][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:18.725][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.730][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.735][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:18.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:18.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:18.740][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175639339].
biodb.DEBUG[2025-05-24 16:03:18.741][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:18.742][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:18.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:18.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:18.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:18.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:18.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:18.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:18.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:18.765][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:18.769][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-05-24 16:03:18.770][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-05-24 16:03:18.773][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-05-24 16:03:18.830][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-05-24 16:03:18.831][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-05-24 16:03:18.833][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-05-24 16:03:18.835][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-05-24 16:03:18.903][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-05-24 16:03:18.905][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content"
biodb.TRACE[2025-05-24 16:03:18.911][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.request"
biodb.DEBUG[2025-05-24 16:03:18.913][private$loadEntries] Creating entries from ids [3]: "175636611, 175636610, 175636582".
biodb.DEBUG[2025-05-24 16:03:18.915][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-05-24 16:03:18.917][cch$loadFileContent] Trying to load 3 files from cache: [3]: "175636611, 175636610, 175636582".
biodb.TRACE[2025-05-24 16:03:18.918][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-05-24 16:03:18.920][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-05-24 16:03:18.921][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-05-24 16:03:18.922][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-05-24 16:03:18.924][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-05-24 16:03:18.925][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-05-24 16:03:18.926][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2025-05-24 16:03:18.928][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/175636611,175636610,175636582/XML".
biodb.DEBUG[2025-05-24 16:03:18.931][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-05-24 16:03:18.933][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-05-24 16:03:18.935][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/175636611,175636610,175636582/XML".
biodb.TRACE[2025-05-24 16:03:19.010][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/175636611,175636610,175636582/XML).
biodb.TRACE[2025-05-24 16:03:19.153][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/175636611.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/175636610.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/175636582.xml"
biodb.DEBUG[2025-05-24 16:03:19.156][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-05-24 16:03:19.158][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-05-24 16:03:19.159][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-05-24 16:03:19.161][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:19.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:19.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:19.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:19.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:19.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:19.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:19.177][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:19.178][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:19.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.181][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:19.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:19.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.187][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:19.189][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:19.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.191][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:19.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:19.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.198][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:19.200][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:19.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.202][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:19.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:19.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.209][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:19.210][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:19.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.213][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:19.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:19.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.219][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:19.221][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:19.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.223][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.225][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:19.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:19.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.230][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:19.231][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:19.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.233][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.235][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:19.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:19.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.240][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:19.241][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:19.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.244][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.245][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:19.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:19.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.250][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:19.252][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:19.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.254][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.256][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:19.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:19.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.261][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:19.262][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:19.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.264][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:19.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:19.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.271][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:19.272][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:19.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.275][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.276][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:19.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:19.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.281][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:19.283][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:19.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.285][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.287][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:19.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:19.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.292][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:19.293][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:19.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.295][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:19.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:19.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.302][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:19.303][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:19.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.306][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.307][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:19.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:19.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.312][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:19.314][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:19.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.316][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.318][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:19.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:19.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.323][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-05-24 16:03:19.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:19.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:19.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:19.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:19.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:19.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.338][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-05-24 16:03:19.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:19.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.342][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:19.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:19.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.347][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:19.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:19.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.352][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-05-24 16:03:19.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:19.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:19.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:19.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:19.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:19.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.367][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-05-24 16:03:19.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:19.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:19.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:19.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:19.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:19.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.382][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-05-24 16:03:19.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:19.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.387][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:19.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:19.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:19.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:19.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.397][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:19.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:19.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:19.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:19.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.406][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:19.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:19.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:19.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:19.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.428][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:19.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:19.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:19.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:19.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:19.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:19.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:19.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:19.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:19.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:19.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:19.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:19.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:19.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:19.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:19.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:19.463][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:19.464][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:19.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.466][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:19.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:19.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.473][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:19.474][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:19.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.476][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.478][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:19.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:19.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.483][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:19.484][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:19.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.487][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:19.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:19.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.493][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:19.496][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:19.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.499][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:19.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:19.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.506][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:19.507][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:19.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.509][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:19.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:19.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.516][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:19.517][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:19.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.520][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:19.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:19.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.526][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:19.528][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:19.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.530][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.531][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:19.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:19.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.537][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:19.538][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:19.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.540][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.542][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:19.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:19.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.547][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:19.548][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:19.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.550][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.552][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:19.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:19.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.557][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:19.559][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:19.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.561][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.563][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:19.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:19.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.568][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:19.569][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:19.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.572][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.573][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:19.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:19.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.578][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:19.580][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:19.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.582][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:19.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:19.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.589][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:19.590][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:19.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.593][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.594][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:19.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:19.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.599][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:19.601][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:19.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.603][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.605][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:19.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:19.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.610][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-05-24 16:03:19.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:19.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:19.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:19.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:19.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:19.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.625][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-05-24 16:03:19.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:19.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:19.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:19.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:19.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:19.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.640][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-05-24 16:03:19.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:19.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:19.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:19.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.650][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:19.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:19.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.655][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-05-24 16:03:19.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:19.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.660][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:19.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:19.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.665][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:19.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:19.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.670][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-05-24 16:03:19.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:19.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.675][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:19.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:19.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.679][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:19.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:19.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.684][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:19.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:19.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.690][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:19.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:19.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.694][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:19.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:19.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:19.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:19.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.704][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:19.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:19.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:19.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:19.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:19.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:19.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:19.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:19.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:19.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:19.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:19.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:19.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:19.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:19.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:19.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:19.740][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:19.741][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:19.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.743][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:19.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:19.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.751][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:19.752][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:19.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.755][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.756][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:19.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:19.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.761][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:19.763][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:19.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.765][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:19.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:19.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.772][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:19.773][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:19.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.775][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:19.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:19.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.782][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:19.783][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:19.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.786][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:19.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:19.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.792][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:19.794][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:19.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.796][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:19.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:19.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.803][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:19.804][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:19.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.806][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.808][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:19.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:19.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.813][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:19.814][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:19.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.817][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.818][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:19.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:19.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.823][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:19.825][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:19.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.827][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:19.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:19.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.834][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:19.835][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:19.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.837][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:19.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:19.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.851][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:19.852][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:19.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.855][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.856][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:19.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:19.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.861][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:19.863][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:19.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.865][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:19.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:19.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.872][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:19.873][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:19.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.876][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.877][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:19.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:19.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.883][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:19.884][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:19.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.886][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.888][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:19.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:19.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.893][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-05-24 16:03:19.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:19.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:19.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:19.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:19.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:19.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.909][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-05-24 16:03:19.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:19.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:19.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:19.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:19.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:19.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.924][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-05-24 16:03:19.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:19.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:19.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:19.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:19.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:19.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.939][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-05-24 16:03:19.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:19.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.944][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:19.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:19.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.949][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:19.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:19.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.954][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-05-24 16:03:19.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:19.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.959][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:19.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:19.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:19.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:19.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.969][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:19.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:19.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.974][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:19.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:19.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.979][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:19.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:19.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:19.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:19.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.988][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:19.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:19.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:19.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:19.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:19.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:19.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:20.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:20.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:20.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:20.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:20.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:20.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:20.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:20.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:20.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:20.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:20.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:20.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:20.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:20.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:20.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:20.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:20.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:20.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:20.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:20.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:20.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:20.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:20.056][self$createEntryFromContent] Accession numbers: 175636611, 175636610, 175636582.
biodb.DEBUG[2025-05-24 16:03:20.057][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:20.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:20.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:20.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:20.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:20.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:20.069][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:20.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:20.072][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.077][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.082][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.083][private$selectFields]
biodb.TRACE[2025-05-24 16:03:20.084][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:20.085][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:20.086][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.088][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.089][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.091][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.092][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.094][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.096][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.097][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.099][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.100][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.101][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.103][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.105][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:20.106][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.111][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.116][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.122][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175636611].
biodb.DEBUG[2025-05-24 16:03:20.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:20.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:20.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:20.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:20.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:20.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:20.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:20.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.141][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.146][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.147][private$selectFields]
biodb.TRACE[2025-05-24 16:03:20.149][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:20.150][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:20.151][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.152][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.154][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.156][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.157][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.159][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.161][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.162][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.163][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.165][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.166][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.168][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.170][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:20.171][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.176][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.181][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.186][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175636610].
biodb.DEBUG[2025-05-24 16:03:20.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:20.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:20.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:20.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:20.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:20.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:20.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:20.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.206][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.211][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.213][private$selectFields]
biodb.TRACE[2025-05-24 16:03:20.214][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:20.215][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:20.216][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.217][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.219][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.221][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.222][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.224][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.226][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.227][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.228][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.230][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.231][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.233][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.235][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:20.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.246][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.251][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175636582].
biodb.DEBUG[2025-05-24 16:03:20.253][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:20.254][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:20.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:20.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:20.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:20.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:20.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:20.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:20.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:20.310][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:20.315][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:20.316][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9701d2e1a6b096cdfd56943877648611".
biodb.TRACE[2025-05-24 16:03:20.318][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:20.320][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content".
biodb.DEBUG[2025-05-24 16:03:20.322][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:20.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:20.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:20.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:20.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:20.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:20.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:20.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:20.337][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.342][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.347][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.348][private$selectFields]
biodb.TRACE[2025-05-24 16:03:20.349][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:20.351][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:20.352][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.353][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.354][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.357][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.358][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.359][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.362][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.363][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.364][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.365][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.367][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.369][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.370][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:20.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.388][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175637135].
biodb.DEBUG[2025-05-24 16:03:20.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:20.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:20.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:20.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:20.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:20.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:20.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:20.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.408][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.413][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.414][private$selectFields]
biodb.TRACE[2025-05-24 16:03:20.415][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:20.416][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:20.417][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.419][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.420][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.422][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.424][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.425][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.427][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.429][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.430][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.431][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.432][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.435][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.436][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:20.437][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.453][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175636749].
biodb.DEBUG[2025-05-24 16:03:20.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:20.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:20.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:20.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:20.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:20.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:20.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:20.467][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.472][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.477][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.478][private$selectFields]
biodb.TRACE[2025-05-24 16:03:20.479][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:20.481][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:20.482][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.483][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.484][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.487][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.488][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.489][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.492][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.493][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.494][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.495][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.497][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.499][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.500][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:20.501][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.507][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.512][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.517][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175634588].
biodb.DEBUG[2025-05-24 16:03:20.518][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:20.520][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:20.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:20.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:20.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:20.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:20.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:20.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:20.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:20.543][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:20.547][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:20.549][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ce15c6e17e9ed97ba06e918ccdf7a5ba".
biodb.TRACE[2025-05-24 16:03:20.550][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:20.552][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content".
biodb.DEBUG[2025-05-24 16:03:20.554][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:20.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:20.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:20.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:20.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:20.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:20.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:20.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:20.569][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.574][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.579][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.580][private$selectFields]
biodb.TRACE[2025-05-24 16:03:20.581][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:20.582][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:20.583][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.585][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.586][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.588][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.589][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.591][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.593][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.594][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.596][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.597][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.598][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.600][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.602][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:20.603][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.608][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.613][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.618][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175633651].
biodb.DEBUG[2025-05-24 16:03:20.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:20.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:20.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:20.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:20.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:20.630][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:20.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:20.633][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.638][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.643][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.644][private$selectFields]
biodb.TRACE[2025-05-24 16:03:20.645][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:20.646][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:20.647][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.649][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.650][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.652][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.654][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.655][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.657][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.659][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.660][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.661][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.662][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.665][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.666][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:20.667][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.672][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.677][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.683][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175617789].
biodb.DEBUG[2025-05-24 16:03:20.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:20.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:20.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:20.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:20.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:20.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:20.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:20.698][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.709][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.715][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.716][private$selectFields]
biodb.TRACE[2025-05-24 16:03:20.717][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:20.718][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:20.719][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.721][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.722][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.724][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.725][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.727][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.729][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.730][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.732][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.733][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.734][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.736][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.738][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:20.739][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.749][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.754][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175614838].
biodb.DEBUG[2025-05-24 16:03:20.756][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:20.757][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:20.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:20.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:20.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:20.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:20.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:20.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:20.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:20.804][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:20.808][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:20.810][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-05-24 16:03:20.811][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:20.813][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-05-24 16:03:20.816][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:20.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:20.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:20.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:20.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:20.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:20.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:20.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:20.831][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.837][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.842][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.843][private$selectFields]
biodb.TRACE[2025-05-24 16:03:20.844][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:20.845][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:20.846][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.848][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.849][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.852][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.853][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.854][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.856][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.858][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.859][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.860][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.862][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.864][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.865][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:20.866][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.872][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.877][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.882][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175637135].
biodb.DEBUG[2025-05-24 16:03:20.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:20.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:20.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:20.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:20.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:20.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:20.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:20.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.902][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.907][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.908][private$selectFields]
biodb.TRACE[2025-05-24 16:03:20.909][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:20.911][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:20.912][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.913][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.914][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.917][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.918][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.919][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.922][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.923][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.924][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.925][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.927][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.929][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.931][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:20.932][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.937][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.942][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.948][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175636749].
biodb.DEBUG[2025-05-24 16:03:20.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:20.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:20.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:20.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:20.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:20.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:20.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:20.962][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.967][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.972][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.973][private$selectFields]
biodb.TRACE[2025-05-24 16:03:20.974][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:20.975][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:20.977][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.978][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.979][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.982][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.983][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.984][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.986][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.988][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.989][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:20.990][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.991][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:20.994][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:20.995][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:20.996][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:20.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.001][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.006][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.012][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175622121].
biodb.DEBUG[2025-05-24 16:03:21.013][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:21.014][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:21.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:21.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:21.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:21.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:21.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:21.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:21.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:21.036][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:21.040][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:21.042][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-05-24 16:03:21.044][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:21.045][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-05-24 16:03:21.047][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:21.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:21.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:21.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:21.057][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:21.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:21.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:21.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:21.062][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.072][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.074][private$selectFields]
biodb.TRACE[2025-05-24 16:03:21.075][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:21.076][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:21.077][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.078][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.080][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.082][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.083][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.085][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.087][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.088][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.089][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.091][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.092][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.094][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.096][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:21.097][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.102][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.112][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175614838].
biodb.DEBUG[2025-05-24 16:03:21.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:21.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:21.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:21.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:21.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:21.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:21.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:21.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.132][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.144][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.145][private$selectFields]
biodb.TRACE[2025-05-24 16:03:21.147][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:21.148][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:21.149][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.151][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.152][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.155][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.156][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.157][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.160][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.161][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.162][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.163][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.165][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.167][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.168][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:21.171][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.176][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.182][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.188][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175610581].
biodb.DEBUG[2025-05-24 16:03:21.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:21.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:21.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:21.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:21.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:21.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:21.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:21.204][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.209][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.214][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.216][private$selectFields]
biodb.TRACE[2025-05-24 16:03:21.217][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:21.218][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:21.219][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.221][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.222][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.224][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.226][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.227][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.229][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.231][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.232][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.233][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.234][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.237][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.238][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:21.239][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.244][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.254][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175609559].
biodb.DEBUG[2025-05-24 16:03:21.256][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:21.257][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:21.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:21.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:21.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:21.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:21.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:21.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:21.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:21.303][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:21.307][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:21.309][cch$loadFileContent] Trying to load 1 files from cache: [1]: "897c6c1cf86bb233833a030ee6928dbf".
biodb.TRACE[2025-05-24 16:03:21.310][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:21.312][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content".
biodb.DEBUG[2025-05-24 16:03:21.314][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:21.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:21.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:21.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:21.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:21.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:21.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:21.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:21.329][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.338][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.340][private$selectFields]
biodb.TRACE[2025-05-24 16:03:21.341][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:21.342][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:21.343][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.344][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.346][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.348][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.349][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.350][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.353][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.354][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.355][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.356][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.358][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.360][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.361][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:21.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.372][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.378][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175639468].
biodb.DEBUG[2025-05-24 16:03:21.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:21.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:21.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:21.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:21.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:21.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:21.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:21.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.397][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.402][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.403][private$selectFields]
biodb.TRACE[2025-05-24 16:03:21.404][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:21.405][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:21.407][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.408][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.409][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.412][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.413][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.414][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.417][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.418][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.419][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.420][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.422][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.424][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.425][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:21.427][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.432][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.437][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.442][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175639353].
biodb.DEBUG[2025-05-24 16:03:21.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:21.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:21.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:21.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:21.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:21.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:21.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:21.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.462][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.466][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.468][private$selectFields]
biodb.TRACE[2025-05-24 16:03:21.469][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:21.470][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:21.471][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.472][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.474][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.476][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.477][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.479][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.481][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.482][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.483][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.485][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.486][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.488][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.490][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:21.491][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.496][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.501][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.506][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175639339].
biodb.DEBUG[2025-05-24 16:03:21.507][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:21.509][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:21.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:21.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:21.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:21.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:21.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:21.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:21.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:21.531][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:21.535][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:21.537][cch$loadFileContent] Trying to load 1 files from cache: [1]: "56a93d3214bbb5417ad13002a40518e8".
biodb.TRACE[2025-05-24 16:03:21.539][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:21.540][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content".
biodb.DEBUG[2025-05-24 16:03:21.542][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:21.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:21.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:21.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:21.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:21.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:21.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:21.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:21.558][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.574][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.576][private$selectFields]
biodb.TRACE[2025-05-24 16:03:21.577][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:21.578][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:21.580][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.581][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.583][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.585][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.586][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.587][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.590][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.591][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.592][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.594][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.595][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.597][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.598][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:21.600][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.605][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.610][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.615][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175636611].
biodb.DEBUG[2025-05-24 16:03:21.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:21.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:21.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:21.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:21.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:21.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:21.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:21.630][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.635][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.640][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.641][private$selectFields]
biodb.TRACE[2025-05-24 16:03:21.643][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:21.644][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:21.645][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.646][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.648][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.650][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.651][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.652][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.655][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.656][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.657][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.659][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.660][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.662][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.663][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:21.665][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.670][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.680][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175636610].
biodb.DEBUG[2025-05-24 16:03:21.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:21.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:21.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:21.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:21.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:21.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:21.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:21.695][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.701][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.706][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.707][private$selectFields]
biodb.TRACE[2025-05-24 16:03:21.708][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:21.709][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:21.710][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.712][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.713][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.716][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.717][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.718][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.721][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.722][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.723][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:21.724][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.726][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.728][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.729][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:21.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.736][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.741][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:21.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.746][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175636582].
biodb.DEBUG[2025-05-24 16:03:21.748][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:21.749][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-05-24 16:03:21.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:21.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:21.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:21.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:21.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:21.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:21.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:21.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:21.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:21.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:21.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:21.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:21.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:21.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:21.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:21.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:21.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:21.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:21.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:21.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:21.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:21.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:21.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:21.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:21.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:21.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:21.838][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:21.843][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-05-24 16:03:21.844][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-05-24 16:03:21.847][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-05-24 16:03:21.904][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-05-24 16:03:21.905][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-05-24 16:03:21.907][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-05-24 16:03:21.909][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-05-24 16:03:21.975][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-05-24 16:03:21.977][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content"
biodb.TRACE[2025-05-24 16:03:21.982][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.request"
biodb.DEBUG[2025-05-24 16:03:21.985][private$loadEntries] Creating entries from ids [2]: "175639074, 175637161".
biodb.DEBUG[2025-05-24 16:03:21.986][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-05-24 16:03:21.988][cch$loadFileContent] Trying to load 2 files from cache: [2]: "175639074, 175637161".
biodb.TRACE[2025-05-24 16:03:21.989][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-05-24 16:03:21.991][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-05-24 16:03:21.992][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-05-24 16:03:21.993][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-05-24 16:03:21.995][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-05-24 16:03:21.996][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-05-24 16:03:21.997][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-05-24 16:03:21.999][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/175639074,175637161/XML".
biodb.DEBUG[2025-05-24 16:03:22.002][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-05-24 16:03:22.003][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-05-24 16:03:22.005][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/175639074,175637161/XML".
biodb.TRACE[2025-05-24 16:03:22.078][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/175639074,175637161/XML).
biodb.TRACE[2025-05-24 16:03:22.233][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/175639074.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/175637161.xml"
biodb.DEBUG[2025-05-24 16:03:22.236][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-05-24 16:03:22.238][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-05-24 16:03:22.239][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-05-24 16:03:22.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:22.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:22.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:22.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:22.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:22.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:22.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:22.256][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:22.257][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:22.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.259][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:22.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:22.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.266][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:22.267][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:22.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.270][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.271][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:22.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:22.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.276][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:22.278][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:22.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.280][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.282][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:22.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:22.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.287][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:22.288][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:22.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.291][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:22.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:22.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.297][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:22.299][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:22.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.301][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:22.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:22.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.308][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:22.309][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:22.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.312][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.313][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:22.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:22.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.318][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:22.320][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:22.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.322][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.324][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:22.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:22.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.329][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:22.330][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:22.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.333][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.334][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:22.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:22.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.339][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:22.341][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:22.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.354][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:22.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:22.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.362][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:22.363][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:22.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.366][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.367][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:22.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:22.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.372][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:22.374][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:22.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.376][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.378][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:22.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:22.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.383][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:22.384][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:22.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.386][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:22.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:22.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.393][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:22.395][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:22.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.397][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.399][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:22.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:22.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.404][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:22.405][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:22.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.407][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.409][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:22.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:22.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.414][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-05-24 16:03:22.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:22.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:22.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:22.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:22.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:22.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.429][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-05-24 16:03:22.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:22.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:22.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:22.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:22.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:22.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.444][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-05-24 16:03:22.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:22.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.449][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:22.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:22.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:22.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:22.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.459][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-05-24 16:03:22.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:22.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:22.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:22.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:22.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:22.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.474][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-05-24 16:03:22.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:22.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:22.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:22.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:22.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:22.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.489][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:22.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:22.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:22.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:22.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:22.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:22.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:22.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:22.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:22.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:22.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:22.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:22.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:22.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:22.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:22.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:22.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:22.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:22.545][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:22.547][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:22.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.549][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:22.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:22.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.556][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:22.557][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:22.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.560][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.561][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:22.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:22.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.567][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:22.568][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:22.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.570][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:22.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:22.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.577][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:22.578][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:22.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.581][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.582][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:22.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:22.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.588][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:22.589][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:22.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.591][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:22.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:22.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.598][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:22.600][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:22.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.602][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:22.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:22.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.609][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:22.610][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:22.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.612][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.614][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-05-24 16:03:22.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:22.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.619][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:22.621][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:22.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.623][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.625][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:22.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:22.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.630][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:22.631][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:22.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.633][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:22.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:22.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.640][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:22.641][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:22.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.644][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.646][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:22.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:22.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.651][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:22.652][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:22.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.655][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.656][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:22.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:22.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.662][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:22.663][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:22.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.665][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-05-24 16:03:22.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:22.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.672][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:22.674][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:22.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.676][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.678][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:22.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:22.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.683][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:22.684][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:22.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.686][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.688][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:22.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:22.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.693][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-05-24 16:03:22.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:22.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:22.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:22.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:22.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:22.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.709][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-05-24 16:03:22.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:22.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:22.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:22.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:22.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:22.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.724][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-05-24 16:03:22.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:22.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:22.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:22.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.735][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:22.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:22.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.740][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-05-24 16:03:22.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:22.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:22.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:22.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:22.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:22.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.756][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-05-24 16:03:22.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:22.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:22.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:22.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.766][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:22.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:22.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.771][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:22.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:22.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.783][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.789][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:22.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:22.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.799][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:22.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:22.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:22.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:22.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:22.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:22.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:22.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:22.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:22.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:22.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:22.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:22.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:22.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:22.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:22.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:22.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:22.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:22.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:22.850][self$createEntryFromContent] Accession numbers: 175639074, 175637161.
biodb.DEBUG[2025-05-24 16:03:22.851][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:22.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:22.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:22.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:22.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:22.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:22.864][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:22.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:22.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.872][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.877][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:22.878][private$selectFields]
biodb.TRACE[2025-05-24 16:03:22.879][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:22.881][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:22.882][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:22.883][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.885][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.887][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.888][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.889][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.892][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.893][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:22.894][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:22.896][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.897][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.899][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.901][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:22.902][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.908][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.913][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.919][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175639468].
biodb.DEBUG[2025-05-24 16:03:22.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:22.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:22.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:22.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:22.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:22.932][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:22.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:22.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.945][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:22.946][private$selectFields]
biodb.TRACE[2025-05-24 16:03:22.947][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:22.948][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:22.949][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:22.951][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.952][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.955][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.956][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.957][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.960][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.961][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:22.962][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:22.963][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.965][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.967][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.968][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:22.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:22.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:22.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:22.985][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175639074].
biodb.DEBUG[2025-05-24 16:03:22.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:22.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:22.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:22.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:22.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:22.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:22.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:23.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.005][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.010][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.011][private$selectFields]
biodb.TRACE[2025-05-24 16:03:23.012][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:23.014][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:23.015][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.016][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.017][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.020][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.021][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.022][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.025][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.026][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.027][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.028][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.030][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.032][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.033][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:23.035][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.045][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.050][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175637161].
biodb.DEBUG[2025-05-24 16:03:23.051][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:23.052][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:23.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:23.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:23.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:23.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:23.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:23.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:23.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:23.075][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:23.079][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-05-24 16:03:23.080][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-05-24 16:03:23.083][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-05-24 16:03:23.140][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-05-24 16:03:23.141][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-05-24 16:03:23.143][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-05-24 16:03:23.145][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-05-24 16:03:23.222][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-05-24 16:03:23.225][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content"
biodb.TRACE[2025-05-24 16:03:23.230][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.request"
biodb.DEBUG[2025-05-24 16:03:23.233][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:23.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:23.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:23.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:23.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:23.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:23.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:23.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:23.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.254][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.259][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.260][private$selectFields]
biodb.TRACE[2025-05-24 16:03:23.261][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:23.262][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:23.263][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.265][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.266][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.268][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.269][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.271][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.273][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.274][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.276][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.277][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.278][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.281][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.282][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:23.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.288][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.294][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.299][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175625165].
biodb.DEBUG[2025-05-24 16:03:23.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:23.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:23.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:23.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:23.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:23.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:23.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:23.314][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.325][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.326][private$selectFields]
biodb.TRACE[2025-05-24 16:03:23.327][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:23.328][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:23.330][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.331][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.332][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.335][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.336][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.337][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.346][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.349][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.350][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.352][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.353][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.356][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.357][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:23.358][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.368][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.373][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175623244].
biodb.DEBUG[2025-05-24 16:03:23.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:23.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:23.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:23.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:23.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:23.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:23.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:23.388][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.393][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.398][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.399][private$selectFields]
biodb.TRACE[2025-05-24 16:03:23.400][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:23.401][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:23.402][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.404][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.405][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.407][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.408][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.410][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.412][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.413][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.414][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.416][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.417][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.419][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.420][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:23.422][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.427][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.432][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.438][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175621446].
biodb.DEBUG[2025-05-24 16:03:23.439][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:23.440][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:23.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:23.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:23.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:23.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:23.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:23.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:23.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:23.487][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:23.491][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:23.492][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-05-24 16:03:23.494][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:23.495][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-05-24 16:03:23.498][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:23.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:23.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:23.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:23.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:23.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:23.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:23.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:23.512][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.517][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.522][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.523][private$selectFields]
biodb.TRACE[2025-05-24 16:03:23.524][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:23.525][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:23.527][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.528][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.529][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.531][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.533][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.534][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.536][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.537][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.539][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.540][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.541][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.543][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.545][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:23.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.551][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.555][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.561][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175639468].
biodb.DEBUG[2025-05-24 16:03:23.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:23.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:23.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:23.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:23.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:23.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:23.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:23.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.581][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.586][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.587][private$selectFields]
biodb.TRACE[2025-05-24 16:03:23.588][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:23.589][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:23.590][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.592][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.593][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.595][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.596][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.598][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.600][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.601][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.602][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.604][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.605][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.607][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.609][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:23.610][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.615][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.620][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.625][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175636749].
biodb.DEBUG[2025-05-24 16:03:23.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:23.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:23.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:23.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:23.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:23.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:23.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:23.639][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.644][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.649][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.650][private$selectFields]
biodb.TRACE[2025-05-24 16:03:23.652][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:23.653][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:23.654][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.655][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.657][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.659][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.660][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.661][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.664][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.665][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.666][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.667][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.669][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.671][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.672][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:23.674][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.678][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.683][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.689][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175636537].
biodb.DEBUG[2025-05-24 16:03:23.690][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:23.691][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:23.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:23.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:23.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:23.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:23.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:23.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:23.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:23.714][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:23.718][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:23.719][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-05-24 16:03:23.721][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:23.723][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-05-24 16:03:23.725][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:23.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:23.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:23.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:23.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:23.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:23.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:23.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:23.740][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.750][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.751][private$selectFields]
biodb.TRACE[2025-05-24 16:03:23.752][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:23.753][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:23.755][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.756][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.757][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.760][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.761][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.762][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.770][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.772][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.774][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.775][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.777][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.780][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.781][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:23.782][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.787][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.792][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.797][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175625165].
biodb.DEBUG[2025-05-24 16:03:23.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:23.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:23.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:23.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:23.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:23.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:23.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:23.812][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.822][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.823][private$selectFields]
biodb.TRACE[2025-05-24 16:03:23.824][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:23.825][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:23.826][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.827][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.829][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.831][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.832][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.834][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.836][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.837][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.838][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.840][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.841][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.843][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.844][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:23.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.855][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.861][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175623244].
biodb.DEBUG[2025-05-24 16:03:23.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:23.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:23.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:23.870][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:23.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:23.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:23.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:23.874][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.884][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.885][private$selectFields]
biodb.TRACE[2025-05-24 16:03:23.886][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:23.887][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:23.889][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.890][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.891][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.893][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.895][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.896][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.898][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.899][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.901][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:23.902][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.903][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.905][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.906][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:23.908][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.913][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.917][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:23.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:23.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:23.923][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175621446].
biodb.DEBUG[2025-05-24 16:03:23.924][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:23.925][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:23.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:23.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:23.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:23.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:23.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:23.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:23.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:23.971][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:23.975][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-05-24 16:03:23.977][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-05-24 16:03:23.979][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-05-24 16:03:24.035][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-05-24 16:03:24.037][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-05-24 16:03:24.039][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-05-24 16:03:24.040][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-05-24 16:03:24.108][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-05-24 16:03:24.110][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content"
biodb.TRACE[2025-05-24 16:03:24.115][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.request"
biodb.DEBUG[2025-05-24 16:03:24.118][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:24.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:24.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:24.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:24.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:24.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:24.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:24.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:24.133][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.144][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.145][private$selectFields]
biodb.TRACE[2025-05-24 16:03:24.147][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:24.148][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:24.149][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.150][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.152][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.154][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.155][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.157][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.159][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.161][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.162][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.163][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.165][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.167][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.168][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:24.170][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.180][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.185][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175639468].
biodb.DEBUG[2025-05-24 16:03:24.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:24.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:24.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:24.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:24.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:24.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:24.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:24.200][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.205][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.210][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.211][private$selectFields]
biodb.TRACE[2025-05-24 16:03:24.213][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:24.214][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:24.215][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.216][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.217][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.220][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.221][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.223][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.225][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.226][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.227][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.228][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.230][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.232][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.233][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:24.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.239][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.244][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.249][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175639353].
biodb.DEBUG[2025-05-24 16:03:24.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:24.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:24.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:24.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:24.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:24.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:24.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:24.264][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.269][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.273][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.275][private$selectFields]
biodb.TRACE[2025-05-24 16:03:24.276][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:24.277][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:24.278][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.279][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.280][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.283][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.284][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.285][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.287][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.289][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.290][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.291][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.292][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.295][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.296][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:24.297][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.302][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.321][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175639339].
biodb.DEBUG[2025-05-24 16:03:24.322][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:24.323][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:24.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:24.327][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:24.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:24.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:24.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:24.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:24.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:24.345][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:24.350][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-05-24 16:03:24.351][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-05-24 16:03:24.353][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-05-24 16:03:24.409][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-05-24 16:03:24.411][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-05-24 16:03:24.412][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-05-24 16:03:24.414][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-05-24 16:03:24.482][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-05-24 16:03:24.484][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content"
biodb.TRACE[2025-05-24 16:03:24.489][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.request"
biodb.DEBUG[2025-05-24 16:03:24.494][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:24.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:24.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:24.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:24.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:24.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:24.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:24.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:24.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.515][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.520][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.521][private$selectFields]
biodb.TRACE[2025-05-24 16:03:24.522][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:24.523][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:24.524][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.526][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.527][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.529][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.531][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.532][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.534][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.536][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.537][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.538][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.539][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.542][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.543][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:24.544][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.549][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.554][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.559][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175636611].
biodb.DEBUG[2025-05-24 16:03:24.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:24.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:24.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:24.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:24.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:24.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:24.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:24.574][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.584][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.585][private$selectFields]
biodb.TRACE[2025-05-24 16:03:24.586][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:24.587][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:24.588][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.589][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.591][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.593][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.594][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.596][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.598][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.599][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.600][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.601][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.603][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.605][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.606][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:24.607][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.612][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.622][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175636610].
biodb.DEBUG[2025-05-24 16:03:24.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:24.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:24.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:24.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:24.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:24.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:24.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:24.637][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.641][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.646][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.647][private$selectFields]
biodb.TRACE[2025-05-24 16:03:24.648][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:24.650][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:24.651][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.652][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.653][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.655][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.657][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.658][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.660][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.661][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.663][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.664][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.665][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.667][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.669][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:24.670][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.679][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.685][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175636582].
biodb.DEBUG[2025-05-24 16:03:24.686][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:24.687][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:24.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:24.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:24.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:24.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:24.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:24.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:24.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:24.732][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:24.736][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:24.738][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8ad32143f99567438eba281a371befbc".
biodb.TRACE[2025-05-24 16:03:24.740][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:24.741][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content".
biodb.DEBUG[2025-05-24 16:03:24.743][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:24.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:24.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:24.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:24.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:24.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:24.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:24.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:24.758][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.763][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.768][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.769][private$selectFields]
biodb.TRACE[2025-05-24 16:03:24.770][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:24.771][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:24.772][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.773][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.775][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.777][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.778][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.779][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.782][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.783][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.784][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.785][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.786][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.789][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.790][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:24.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.801][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.806][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175639468].
biodb.DEBUG[2025-05-24 16:03:24.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:24.808][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:24.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:24.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:24.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:24.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:24.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:24.820][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.825][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.830][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.831][private$selectFields]
biodb.TRACE[2025-05-24 16:03:24.832][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:24.833][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:24.834][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.835][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.837][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.839][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.840][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.841][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.844][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.845][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.846][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.847][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.849][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.859][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.860][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:24.862][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.872][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.877][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175639074].
biodb.DEBUG[2025-05-24 16:03:24.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:24.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:24.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:24.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:24.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:24.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:24.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:24.892][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.901][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.903][private$selectFields]
biodb.TRACE[2025-05-24 16:03:24.904][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:24.905][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:24.906][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.907][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.909][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.911][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.912][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.913][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.916][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.917][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.918][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:24.919][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.921][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.923][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.924][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:24.925][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.930][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.935][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.941][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175637161].
biodb.DEBUG[2025-05-24 16:03:24.942][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:24.943][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:24.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:24.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:24.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:24.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:24.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:24.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:24.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:24.965][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:24.970][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:24.971][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ead2a4c6d4c972bfbf7c3e8a0e8299c8".
biodb.TRACE[2025-05-24 16:03:24.973][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:24.974][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content".
biodb.DEBUG[2025-05-24 16:03:24.976][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:24.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:24.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:24.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:24.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:24.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:24.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:24.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:24.992][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:24.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:24.997][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:24.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.001][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.003][private$selectFields]
biodb.TRACE[2025-05-24 16:03:25.004][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:25.005][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:25.006][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.007][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.009][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.011][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.012][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.014][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.016][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.017][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.019][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.020][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.021][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.024][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.025][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:25.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.031][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.036][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.042][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175625165].
biodb.DEBUG[2025-05-24 16:03:25.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:25.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:25.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:25.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:25.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:25.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:25.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:25.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.061][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.066][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.067][private$selectFields]
biodb.TRACE[2025-05-24 16:03:25.068][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:25.070][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:25.071][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.072][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.073][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.075][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.077][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.078][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.080][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.081][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.083][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.084][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.085][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.087][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.088][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:25.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.094][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.099][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.104][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175623244].
biodb.DEBUG[2025-05-24 16:03:25.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:25.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:25.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:25.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:25.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:25.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:25.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:25.119][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.123][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.128][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.129][private$selectFields]
biodb.TRACE[2025-05-24 16:03:25.131][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:25.132][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:25.133][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.134][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.135][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.138][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.139][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.140][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.143][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.144][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.145][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.146][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.147][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.150][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.151][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:25.152][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.167][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175621446].
biodb.DEBUG[2025-05-24 16:03:25.168][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:25.170][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:25.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:25.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:25.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:25.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:25.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:25.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:25.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:25.215][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:25.219][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:25.221][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-05-24 16:03:25.222][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:25.224][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-05-24 16:03:25.226][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:25.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:25.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:25.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:25.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:25.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:25.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:25.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:25.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.246][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.251][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.252][private$selectFields]
biodb.TRACE[2025-05-24 16:03:25.253][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:25.255][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:25.256][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.257][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.258][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.261][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.262][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.263][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.265][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.267][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.268][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.269][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.270][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.279][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.281][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:25.282][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.288][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.292][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.298][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175639468].
biodb.DEBUG[2025-05-24 16:03:25.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:25.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:25.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:25.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:25.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:25.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:25.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:25.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.322][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.323][private$selectFields]
biodb.TRACE[2025-05-24 16:03:25.324][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:25.325][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:25.326][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.328][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.329][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.331][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.332][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.334][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.336][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.337][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.338][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.340][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.341][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.343][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.344][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:25.346][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.355][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.361][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175636749].
biodb.DEBUG[2025-05-24 16:03:25.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:25.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:25.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:25.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:25.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:25.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:25.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:25.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.379][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.385][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.386][private$selectFields]
biodb.TRACE[2025-05-24 16:03:25.387][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:25.388][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:25.389][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.391][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.392][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.394][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.395][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.397][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.399][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.400][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.402][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.403][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.404][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.407][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.408][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:25.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.424][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175636537].
biodb.DEBUG[2025-05-24 16:03:25.426][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:25.427][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:25.429][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:25.431][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:25.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:25.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:25.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:25.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:25.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:25.450][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:25.454][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:25.456][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-05-24 16:03:25.457][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:25.459][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-05-24 16:03:25.461][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:25.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:25.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:25.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:25.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:25.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:25.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:25.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:25.476][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.481][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.486][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.487][private$selectFields]
biodb.TRACE[2025-05-24 16:03:25.489][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:25.490][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:25.491][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.492][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.493][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.496][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.497][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.498][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.501][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.502][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.503][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.504][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.506][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.508][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.509][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:25.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.515][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.520][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.525][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175625165].
biodb.DEBUG[2025-05-24 16:03:25.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:25.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:25.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:25.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:25.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:25.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:25.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:25.540][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.544][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.549][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.550][private$selectFields]
biodb.TRACE[2025-05-24 16:03:25.552][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:25.553][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:25.554][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.555][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.556][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.559][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.560][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.561][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.564][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.565][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.566][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.567][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.568][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.571][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.572][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:25.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.583][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.588][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175623244].
biodb.DEBUG[2025-05-24 16:03:25.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:25.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:25.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:25.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:25.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:25.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:25.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:25.603][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.608][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.612][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.613][private$selectFields]
biodb.TRACE[2025-05-24 16:03:25.615][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:25.616][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:25.617][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.618][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.619][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.622][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.623][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.624][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.627][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.628][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.629][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.630][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.632][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.634][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.635][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:25.636][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.641][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.646][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.651][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175621446].
biodb.DEBUG[2025-05-24 16:03:25.653][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:25.654][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:25.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:25.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:25.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:25.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:25.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:25.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:25.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:25.708][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:25.713][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:25.714][cch$loadFileContent] Trying to load 1 files from cache: [1]: "93b38cb571769a97b3321f7f5a86241a".
biodb.TRACE[2025-05-24 16:03:25.716][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:25.717][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content".
biodb.DEBUG[2025-05-24 16:03:25.720][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:25.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:25.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:25.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:25.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:25.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:25.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:25.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:25.735][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.741][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.746][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.747][private$selectFields]
biodb.TRACE[2025-05-24 16:03:25.748][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:25.749][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:25.750][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.752][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.753][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.755][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.757][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.758][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.760][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.761][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.763][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.764][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.765][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.768][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.769][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:25.770][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.775][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.786][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175639468].
biodb.DEBUG[2025-05-24 16:03:25.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:25.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:25.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:25.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:25.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:25.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:25.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:25.801][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.811][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.812][private$selectFields]
biodb.TRACE[2025-05-24 16:03:25.813][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:25.814][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:25.815][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.817][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.818][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.820][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.822][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.823][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.825][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.827][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.828][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.829][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.830][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.833][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.834][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:25.835][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.845][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.850][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175639353].
biodb.DEBUG[2025-05-24 16:03:25.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:25.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:25.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:25.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:25.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:25.862][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:25.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:25.865][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.870][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.875][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.876][private$selectFields]
biodb.TRACE[2025-05-24 16:03:25.877][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:25.878][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:25.879][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.881][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.882][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.884][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.886][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.887][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.889][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.891][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.892][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.893][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.895][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.897][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.898][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:25.900][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.905][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.909][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.915][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175639339].
biodb.DEBUG[2025-05-24 16:03:25.916][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:25.917][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:25.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:25.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:25.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:25.928][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:25.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:25.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:25.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:25.939][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:25.943][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:25.945][cch$loadFileContent] Trying to load 1 files from cache: [1]: "405cf707472983a89dc9e0092ca888ad".
biodb.TRACE[2025-05-24 16:03:25.946][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:25.948][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content".
biodb.DEBUG[2025-05-24 16:03:25.950][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:25.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:25.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:25.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:25.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:25.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:25.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:25.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:25.965][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.974][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.976][private$selectFields]
biodb.TRACE[2025-05-24 16:03:25.977][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:25.978][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:25.979][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.980][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.982][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.984][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.985][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.986][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.989][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.990][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.991][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:25.992][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.994][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:25.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:25.996][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:25.997][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:25.998][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.003][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.014][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175636611].
biodb.DEBUG[2025-05-24 16:03:26.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:26.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:26.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:26.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:26.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:26.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:26.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:26.028][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.033][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.038][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:26.039][private$selectFields]
biodb.TRACE[2025-05-24 16:03:26.041][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:26.042][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:26.043][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:26.044][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.045][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.048][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.049][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.050][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.053][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.054][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:26.055][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:26.056][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.058][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.060][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.061][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:26.063][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.072][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.078][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175636610].
biodb.DEBUG[2025-05-24 16:03:26.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:26.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:26.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:26.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:26.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:26.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:26.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:26.092][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.097][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.102][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:26.103][private$selectFields]
biodb.TRACE[2025-05-24 16:03:26.104][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:26.106][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:26.107][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:26.108][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.109][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.118][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.119][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.121][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.123][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.125][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:26.126][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-05-24 16:03:26.127][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.128][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.131][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.132][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-05-24 16:03:26.133][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.148][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [175636582].
biodb.DEBUG[2025-05-24 16:03:26.149][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:26.151][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-05-24 16:03:26.174][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-05-24 16:03:26.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-05-24 16:03:26.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.180][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-05-24 16:03:26.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-05-24 16:03:26.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-05-24 16:03:26.189][biodb::testThat]
biodb.INFO [2025-05-24 16:03:26.190][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-05-24 16:03:26.191][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:03:26.192][biodb::testThat]
biodb.TRACE[2025-05-24 16:03:26.196][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-05-24 16:03:26.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-05-24 16:03:26.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.201][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-05-24 16:03:26.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-05-24 16:03:26.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:26.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:26.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:26.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:26.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:26.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:26.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:26.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:26.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:26.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:26.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:26.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:26.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:26.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:26.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:26.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:26.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:26.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:26.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:26.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:26.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:26.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:26.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:26.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:26.266][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:26.270][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:26.272][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-05-24 16:03:26.273][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:26.275][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-05-24 16:03:26.277][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:26.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:26.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:26.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:26.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:26.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:26.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:26.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:26.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:26.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:26.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:26.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:26.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.301][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:26.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:26.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:26.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:26.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:26.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:26.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.316][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:26.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:26.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:26.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:26.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:26.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:26.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:26.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:26.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.335][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:26.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:26.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:26.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:26.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:26.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:26.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.349][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:26.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:26.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.354][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:26.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:26.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:26.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:26.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:26.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:26.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.369][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:26.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:26.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.374][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:26.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:26.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.378][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:26.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:26.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.383][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:26.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:26.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:26.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:26.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:26.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:26.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:26.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:26.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:26.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:26.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.408][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:26.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:26.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.413][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:26.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:26.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.417][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.422][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.427][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:26.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:26.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.432][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:26.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:26.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.437][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:26.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:26.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.442][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:26.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:26.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.446][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:26.448][private$selectFields]
biodb.TRACE[2025-05-24 16:03:26.449][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:26.450][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:26.451][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:26.452][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:26.454][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:26.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.456][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.457][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:26.458][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:26.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.461][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.462][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:26.463][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:26.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.465][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.467][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:26.468][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:26.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.470][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.471][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:26.473][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:26.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.475][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.476][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:26.477][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:26.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.480][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.481][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:26.482][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:26.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.484][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.486][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:26.487][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:26.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.489][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.490][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:26.492][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:26.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.494][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.495][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:26.496][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:26.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.499][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.500][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:26.501][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:26.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.504][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.505][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:26.506][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:26.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.509][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.510][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:26.511][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:26.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.513][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.515][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.516][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.518][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.519][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:26.521][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:26.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.530][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.531][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:26.532][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:26.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.535][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.537][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:26.538][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:26.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.540][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.541][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:26.543][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:26.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.545][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.546][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:26.547][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:26.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.550][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.551][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:26.552][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:26.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.555][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.556][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:26.557][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:26.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.559][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.561][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:26.562][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:26.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.564][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.565][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:26.567][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:26.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.569][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.570][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:26.572][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:26.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.574][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.575][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:26.576][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:26.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.579][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.580][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:26.581][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:26.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.584][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.585][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:26.586][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:26.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.588][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.590][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:26.591][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:26.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.593][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.595][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:26.596][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:26.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.598][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.599][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.601][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.603][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.604][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:26.606][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:26.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.608][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.609][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:26.610][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:26.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.613][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.614][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:26.615][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:26.616][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:26.618][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:26.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.620][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.621][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:26.622][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:26.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.625][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.626][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:26.627][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:26.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.629][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.631][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:26.632][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:26.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.634][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.635][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:26.637][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:26.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.639][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.640][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:26.641][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:26.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.644][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.645][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:26.646][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:26.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.649][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.650][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:26.651][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:26.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.653][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.655][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:26.656][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:26.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.658][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.659][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:26.661][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:26.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.663][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.664][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:26.665][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:26.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.668][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.669][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:26.670][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:26.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.673][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.674][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:26.675][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:26.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.677][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.679][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.680][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.682][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.683][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:26.685][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:26.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.687][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.688][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:26.689][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:26.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.692][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.693][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-05-24 16:03:26.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:26.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:26.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:26.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:26.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:26.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:26.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:26.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:26.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:26.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:26.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:26.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:26.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:26.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:26.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:26.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:26.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:26.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:26.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.741][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:26.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:26.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:26.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:26.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:26.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:26.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:26.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:26.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:26.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:26.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:26.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:26.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:26.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:26.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:26.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:26.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.782][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:26.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:26.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.787][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:26.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:26.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.792][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:26.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:26.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.797][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:26.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:26.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:26.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:26.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.808][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:26.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:26.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:26.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:26.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.818][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:26.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:26.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:26.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:26.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:26.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:26.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.833][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:26.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:26.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.838][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:26.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:26.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.843][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:26.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:26.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:26.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:26.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:26.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:26.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:26.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:26.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:26.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:26.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:26.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:26.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:26.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:26.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.879][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:26.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:26.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.884][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:26.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:26.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.890][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:26.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:26.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.895][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.900][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.906][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:26.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.911][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:26.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:26.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.916][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:26.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:26.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.921][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:26.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:26.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.926][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:26.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:26.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.931][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:26.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:26.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.942][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:26.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:26.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.963][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [175637135, 5-fluoro-8-isopropyl-quinolin-2-amine, 5-fluoro-8-propan-2-yl-2-quinolinamine, 5-fluoro-8-propan-2-ylquinolin-2-amine, 5-fluoranyl-8-propan-2-yl-quinolin-2-amine, ...].
biodb.DEBUG[2025-05-24 16:03:26.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:26.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:26.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:26.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:26.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:26.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:26.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:26.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:26.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:26.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:26.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:26.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.988][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:26.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:26.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:26.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:26.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:26.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:26.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:26.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:27.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.003][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:27.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:27.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:27.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:27.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:27.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:27.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:27.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:27.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:27.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:27.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.028][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:27.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:27.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:27.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:27.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.037][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:27.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:27.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.042][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:27.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:27.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.047][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:27.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:27.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.052][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:27.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:27.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:27.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:27.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.062][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:27.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:27.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.067][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:27.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:27.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.072][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:27.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:27.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:27.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:27.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:27.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:27.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:27.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:27.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:27.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:27.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.098][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:27.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:27.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.103][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:27.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:27.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.108][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:27.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:27.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.113][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:27.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:27.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.118][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:27.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:27.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.123][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:27.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:27.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.128][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:27.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:27.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.133][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:27.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:27.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.138][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:27.139][private$selectFields]
biodb.TRACE[2025-05-24 16:03:27.140][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:27.142][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:27.143][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:27.144][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:27.145][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:27.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.148][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.149][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:27.150][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:27.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.153][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.154][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:27.155][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:27.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.158][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.159][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:27.160][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:27.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.163][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.164][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:27.165][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:27.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.167][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.169][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:27.170][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:27.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.172][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.174][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:27.175][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:27.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.177][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.179][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:27.180][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:27.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.182][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.184][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:27.185][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:27.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.188][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.189][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:27.190][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:27.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.193][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.194][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:27.195][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:27.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.198][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.199][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:27.200][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:27.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.203][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.204][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:27.205][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:27.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.208][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.209][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:27.210][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:27.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.213][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.214][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:27.215][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:27.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.218][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.219][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:27.220][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:27.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.222][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.224][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:27.225][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:27.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.227][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.229][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:27.230][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:27.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.232][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.234][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:27.235][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:27.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.237][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.239][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:27.240][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:27.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.242][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.244][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:27.245][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:27.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.247][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.249][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:27.250][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:27.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.252][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.253][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:27.255][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:27.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.257][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.258][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:27.260][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:27.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.262][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.263][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:27.265][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:27.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.267][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.268][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:27.270][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:27.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.272][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.273][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:27.275][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:27.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.277][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.278][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:27.280][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:27.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.282][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.283][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:27.285][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:27.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.287][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.288][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:27.289][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:27.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.292][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.293][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:27.294][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:27.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.297][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.298][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:27.299][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:27.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.302][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.303][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:27.304][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:27.305][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:27.307][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:27.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.309][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.310][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:27.312][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:27.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.314][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.315][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:27.316][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:27.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.319][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.320][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:27.321][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:27.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.324][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.325][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:27.327][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:27.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.329][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.330][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:27.332][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:27.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.334][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.335][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:27.337][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:27.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.339][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.341][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:27.342][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:27.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.345][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.346][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:27.347][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:27.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.350][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.358][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:27.360][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:27.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.362][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.364][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:27.365][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:27.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.368][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.369][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:27.370][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:27.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.373][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.374][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:27.375][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:27.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.378][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.379][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:27.380][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:27.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.383][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.384][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:27.385][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:27.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.388][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.389][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:27.390][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:27.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.393][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.394][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-05-24 16:03:27.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:27.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:27.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:27.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:27.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:27.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:27.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.411][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:27.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:27.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:27.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:27.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.421][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:27.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:27.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:27.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:27.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.431][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:27.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:27.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:27.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:27.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:27.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:27.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:27.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:27.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.451][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:27.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:27.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:27.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:27.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:27.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:27.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.467][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:27.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:27.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:27.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:27.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.477][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:27.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:27.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.482][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:27.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:27.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.487][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:27.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:27.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.492][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:27.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:27.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.497][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:27.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:27.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:27.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:27.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:27.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:27.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:27.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:27.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:27.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:27.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.522][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:27.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:27.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:27.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:27.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.533][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:27.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:27.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.538][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:27.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:27.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.543][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:27.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:27.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:27.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:27.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:27.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:27.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:27.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:27.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:27.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:27.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:27.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:27.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:27.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:27.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.579][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:27.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:27.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.584][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:27.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:27.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.589][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:27.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:27.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.594][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:27.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:27.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:27.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:27.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.604][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:27.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:27.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.609][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:27.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:27.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.614][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:27.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:27.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.619][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:27.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:27.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.624][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:27.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:27.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.629][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:27.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:27.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.634][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:27.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:27.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.650][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [175636749, (2S)-5'-methoxy-2,3-dimethyl-spiro[aziridin-1-ium-1,2'-benzotriazol-2-ium], (2S)-5'-methoxy-2,3-dimethylspiro[aziridin-1-ium-1,2'-benzotriazol-2-ium], (2S)-5'-methoxy-2,3-dimethylspiro[aziridin-1-ium-1,2'-benzotriazol-2-ium], (2S)-5'-methoxy-2,3-dimethyl-spiro[aziridin-1-ium-1,2'-benzotriazol-2-ium], ...].
biodb.DEBUG[2025-05-24 16:03:27.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:27.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:27.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:27.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:27.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:27.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:27.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:27.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:27.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:27.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:27.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:27.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:27.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:27.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.679][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:27.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:27.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.684][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:27.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:27.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:27.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:27.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.694][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:27.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:27.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:27.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:27.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.704][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:27.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:27.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:27.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:27.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:27.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:27.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:27.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:27.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.724][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:27.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:27.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.729][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:27.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:27.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.733][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:27.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:27.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:27.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:27.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:27.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:27.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.748][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:27.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:27.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.753][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:27.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:27.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.758][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:27.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:27.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:27.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:27.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:27.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:27.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:27.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:27.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:27.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:27.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.814][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:27.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:27.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.819][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:27.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:27.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.824][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:27.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:27.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:27.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:27.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.834][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:27.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:27.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.838][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:27.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:27.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.843][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:27.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:27.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.848][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:27.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:27.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.853][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:27.854][private$selectFields]
biodb.TRACE[2025-05-24 16:03:27.856][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:27.857][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:27.858][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:27.859][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:27.861][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:27.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.863][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.864][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:27.865][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:27.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.868][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.869][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:27.870][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:27.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.873][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.874][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:27.875][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:27.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.877][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.879][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:27.880][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:27.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.882][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.883][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:27.885][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:27.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.887][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.888][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:27.890][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:27.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.893][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.894][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:27.895][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:27.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.897][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.899][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:27.900][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:27.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.902][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.904][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:27.905][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:27.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.907][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.908][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:27.910][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:27.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.912][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.913][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:27.915][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:27.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.917][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.918][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:27.920][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:27.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.922][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.923][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:27.925][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:27.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.927][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.928][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:27.930][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:27.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.932][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.933][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:27.935][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:27.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.937][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.938][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:27.940][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:27.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.942][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.943][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:27.944][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:27.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.947][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.948][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:27.949][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:27.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.952][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.953][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:27.954][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:27.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.957][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.958][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:27.959][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:27.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.961][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.963][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:27.964][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:27.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.966][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.968][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:27.969][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:27.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.972][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.973][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:27.974][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:27.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.976][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.978][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:27.979][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:27.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.982][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.983][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:27.984][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:27.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.986][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.988][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:27.989][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:27.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.991][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.992][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:27.994][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:27.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:27.996][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:27.997][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:27.999][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:28.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.001][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.002][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:28.003][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:28.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.006][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.007][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:28.008][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:28.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.011][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.012][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:28.013][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:28.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.015][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.017][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:28.018][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:28.019][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:28.020][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:28.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.023][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.024][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:28.026][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:28.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.028][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.030][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:28.031][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:28.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.034][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.035][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:28.036][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:28.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.039][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.040][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:28.041][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:28.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.043][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.045][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:28.046][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:28.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.048][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.050][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:28.051][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:28.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.053][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.054][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:28.056][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:28.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.058][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.059][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:28.061][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:28.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.063][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.064][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:28.065][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:28.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.068][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.069][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:28.070][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:28.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.073][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.074][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:28.075][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:28.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.078][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.079][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:28.080][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:28.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.083][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.084][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:28.085][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:28.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.087][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.089][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:28.090][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:28.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.092][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.094][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:28.095][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:28.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.097][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.099][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-05-24 16:03:28.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:28.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:28.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:28.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:28.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:28.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:28.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.115][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:28.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:28.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:28.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:28.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:28.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:28.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:28.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:28.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:28.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:28.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:28.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:28.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:28.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:28.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:28.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:28.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:28.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:28.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:28.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:28.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:28.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:28.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.172][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:28.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:28.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:28.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:28.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:28.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:28.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:28.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:28.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.193][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:28.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:28.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.198][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:28.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:28.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.210][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:28.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:28.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:28.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:28.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:28.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:28.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.226][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:28.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:28.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:28.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:28.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.237][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:28.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:28.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:28.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:28.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.247][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:28.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:28.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.252][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:28.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:28.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.257][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:28.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:28.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:28.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:28.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:28.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:28.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:28.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:28.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:28.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:28.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:28.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:28.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:28.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:28.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.293][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:28.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:28.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.298][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:28.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:28.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.303][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:28.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:28.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.308][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:28.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:28.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.313][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:28.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:28.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.318][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:28.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:28.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.323][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:28.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:28.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.328][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:28.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:28.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.334][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:28.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:28.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.340][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:28.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:28.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.345][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:28.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:28.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.350][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:28.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:28.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.367][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [175622121, 2-ethyl-4-(oxetan-3-ylamino)pyrimidine-5-carbonitrile, 2-ethyl-4-(3-oxetanylamino)-5-pyrimidinecarbonitrile, 2-ethyl-4-(oxetan-3-ylamino)pyrimidine-5-carbonitrile, 2-ethyl-4-(oxetan-3-ylamino)pyrimidine-5-carbonitrile, ...].
biodb.DEBUG[2025-05-24 16:03:28.368][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:28.376][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:28.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:28.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:28.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:28.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:28.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:28.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:28.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:28.401][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:28.405][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:28.407][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-05-24 16:03:28.408][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:28.410][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-05-24 16:03:28.412][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:28.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:28.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:28.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:28.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:28.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:28.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:28.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:28.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:28.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:28.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:28.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:28.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:28.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:28.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:28.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:28.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:28.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:28.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:28.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:28.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:28.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:28.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.463][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:28.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:28.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:28.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:28.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:28.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:28.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:28.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:28.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:28.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:28.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.489][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:28.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:28.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.494][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:28.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:28.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.499][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:28.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:28.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:28.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:28.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:28.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:28.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.513][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:28.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:28.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.518][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:28.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:28.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.523][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:28.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:28.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:28.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:28.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:28.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:28.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:28.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:28.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:28.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:28.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.548][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:28.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:28.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.553][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:28.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:28.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.558][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:28.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:28.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:28.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:28.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.568][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:28.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:28.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:28.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:28.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.577][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:28.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:28.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.582][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:28.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:28.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.587][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:28.588][private$selectFields]
biodb.TRACE[2025-05-24 16:03:28.589][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:28.591][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:28.592][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:28.593][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:28.594][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:28.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.597][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.598][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:28.599][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:28.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.601][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.602][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:28.604][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:28.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.606][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.607][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:28.609][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:28.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.611][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.612][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:28.613][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:28.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.616][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.617][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:28.618][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:28.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.620][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.622][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:28.623][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:28.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.625][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.626][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:28.628][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:28.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.637][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.639][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:28.640][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:28.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.643][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.644][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:28.645][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:28.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.648][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.649][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:28.650][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:28.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.652][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.654][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:28.655][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:28.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.657][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.659][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:28.660][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:28.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.662][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.664][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:28.665][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:28.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.667][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.668][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:28.670][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:28.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.672][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.673][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:28.675][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:28.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.677][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.678][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:28.680][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:28.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.682][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.683][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:28.685][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:28.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.687][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.688][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:28.690][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:28.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.692][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.693][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:28.695][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:28.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.697][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.698][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:28.699][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:28.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.702][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.703][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:28.704][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:28.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.707][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.708][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:28.709][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:28.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.712][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.713][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:28.714][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:28.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.716][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.718][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:28.719][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:28.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.721][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.722][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:28.724][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:28.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.726][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.727][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:28.729][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:28.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.731][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.732][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:28.733][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:28.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.736][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.737][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:28.738][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:28.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.741][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.742][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:28.743][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:28.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.745][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.747][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:28.748][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:28.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.750][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.751][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:28.753][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:28.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.755][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.756][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:28.758][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:28.759][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:28.760][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:28.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.762][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.764][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:28.765][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:28.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.767][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.768][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:28.770][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:28.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.772][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.773][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:28.775][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:28.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.777][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.778][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:28.779][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:28.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.782][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.783][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:28.784][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:28.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.786][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.788][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:28.789][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:28.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.791][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.792][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:28.794][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:28.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.796][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.797][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:28.799][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:28.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.801][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.802][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:28.803][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:28.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.806][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.807][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:28.808][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:28.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.811][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.812][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:28.813][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:28.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.815][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.817][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:28.818][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:28.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.820][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.821][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:28.823][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:28.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.825][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.826][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:28.827][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:28.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.830][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.831][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:28.832][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:28.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.835][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.836][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-05-24 16:03:28.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:28.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:28.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:28.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:28.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:28.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:28.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:28.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:28.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:28.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:28.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:28.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:28.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:28.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:28.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:28.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:28.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:28.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:28.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:28.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:28.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.887][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:28.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:28.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:28.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:28.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:28.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:28.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.902][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:28.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:28.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:28.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:28.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.912][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:28.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:28.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:28.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:28.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:28.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:28.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.927][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:28.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:28.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.931][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:28.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:28.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.936][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:28.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:28.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:28.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:28.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:28.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:28.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:28.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:28.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:28.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:28.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.961][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:28.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:28.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:28.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:28.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.971][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:28.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:28.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.976][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:28.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:28.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.981][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:28.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:28.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:28.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:28.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:28.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:28.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:28.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:28.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:28.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:28.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:29.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:29.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:29.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:29.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:29.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:29.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.017][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:29.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:29.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.022][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:29.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:29.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.027][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:29.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:29.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.033][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:29.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:29.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.038][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:29.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:29.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.050][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:29.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:29.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.056][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:29.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:29.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.061][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:29.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:29.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.066][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:29.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:29.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.071][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:29.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:29.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.076][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:29.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:29.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.081][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:29.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:29.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.098][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [175614838, 2-(difluoromethyl)-3-methyl-indazole-6-carboxylic acid, 2-(difluoromethyl)-3-methyl-6-indazolecarboxylic acid, 2-(difluoromethyl)-3-methylindazole-6-carboxylic acid, 2-[bis(fluoranyl)methyl]-3-methyl-indazole-6-carboxylic acid, ...].
biodb.DEBUG[2025-05-24 16:03:29.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:29.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:29.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:29.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:29.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:29.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:29.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:29.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:29.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:29.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:29.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:29.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.122][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:29.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:29.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:29.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:29.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:29.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:29.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.137][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:29.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:29.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.142][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:29.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:29.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:29.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:29.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:29.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:29.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:29.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:29.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:29.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:29.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:29.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:29.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.171][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:29.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:29.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.176][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:29.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:29.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:29.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:29.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:29.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:29.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:29.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:29.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:29.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:29.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.200][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:29.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:29.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.205][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:29.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:29.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:29.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:29.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:29.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:29.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:29.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:29.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:29.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:29.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.229][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:29.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:29.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.234][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:29.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:29.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.239][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:29.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:29.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.244][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:29.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:29.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.249][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:29.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:29.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.254][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:29.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:29.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.258][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:29.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:29.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.263][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:29.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:29.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.268][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:29.270][private$selectFields]
biodb.TRACE[2025-05-24 16:03:29.271][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:29.272][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:29.273][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:29.275][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:29.276][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:29.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.278][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.280][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:29.281][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:29.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.283][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.285][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:29.286][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:29.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.288][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.289][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:29.291][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:29.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.293][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.294][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:29.296][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:29.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.298][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.299][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:29.300][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:29.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.303][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.304][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:29.305][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:29.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.308][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.309][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:29.310][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:29.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.312][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.314][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:29.315][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:29.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.317][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.319][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:29.320][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:29.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.322][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.323][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:29.325][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:29.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.327][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.328][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:29.330][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:29.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.332][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.333][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:29.335][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:29.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.337][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.338][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:29.340][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:29.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.342][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.343][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:29.345][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:29.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.347][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.348][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:29.350][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:29.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.352][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.353][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:29.354][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:29.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.357][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.358][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:29.359][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:29.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.362][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.363][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:29.364][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:29.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.367][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.368][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:29.369][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:29.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.371][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.373][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:29.374][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:29.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.376][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.377][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:29.379][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:29.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.381][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.382][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:29.384][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:29.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.386][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.387][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:29.388][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:29.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.391][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.392][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:29.393][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:29.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.396][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.397][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:29.398][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:29.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.400][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.402][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:29.403][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:29.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.405][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.407][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:29.408][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:29.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.410][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.411][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:29.413][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:29.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.415][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.416][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:29.418][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:29.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.420][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.421][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:29.422][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:29.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.425][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.426][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:29.427][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:29.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.430][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.431][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:29.432][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:29.433][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:29.435][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:29.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.437][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.438][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:29.439][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:29.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.442][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.443][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:29.444][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:29.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.447][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.454][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:29.455][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:29.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.458][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.460][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:29.461][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:29.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.463][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.464][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:29.466][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:29.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.468][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.469][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:29.471][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:29.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.473][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.474][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:29.475][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:29.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.478][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.479][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:29.480][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:29.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.483][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.484][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:29.485][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:29.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.488][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.489][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:29.490][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:29.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.492][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.494][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:29.495][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:29.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.497][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.499][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:29.500][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:29.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.502][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.503][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:29.505][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:29.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.507][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.508][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:29.510][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:29.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.512][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.513][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:29.514][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:29.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.517][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.518][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-05-24 16:03:29.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:29.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:29.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:29.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:29.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:29.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:29.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:29.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:29.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:29.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:29.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.544][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:29.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:29.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:29.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:29.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:29.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:29.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:29.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:29.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:29.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:29.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.570][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:29.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:29.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:29.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:29.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:29.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:29.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:29.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:29.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:29.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:29.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:29.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:29.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:29.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:29.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:29.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:29.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.610][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:29.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:29.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.615][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:29.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:29.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.620][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:29.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:29.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:29.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:29.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:29.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:29.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:29.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:29.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.641][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:29.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:29.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.646][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:29.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:29.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.651][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:29.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:29.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.656][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:29.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:29.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.661][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:29.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:29.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.666][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:29.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:29.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:29.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:29.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:29.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:29.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:29.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:29.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:29.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:29.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:29.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:29.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:29.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:29.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.701][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:29.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:29.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:29.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:29.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.711][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:29.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:29.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:29.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:29.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.721][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:29.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:29.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:29.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:29.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.731][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:29.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:29.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.736][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:29.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:29.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.741][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:29.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:29.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.746][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:29.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:29.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.752][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:29.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:29.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.757][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:29.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:29.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.774][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [175610581, (1-ethyl-3-methyl-butoxy)-hydroxy-methoxy-phosphanylidene-lambda5-phosphane, hydroxy-methoxy-(5-methylhexan-3-yloxy)-phosphinidenephosphorane, hydroxy-methoxy-(5-methylhexan-3-yloxy)-phosphanylidene-lambda5-phosphane, methoxy-(5-methylhexan-3-yloxy)-oxidanyl-phosphanylidene-lambda5-phosphane, ...].
biodb.DEBUG[2025-05-24 16:03:29.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:29.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:29.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:29.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:29.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:29.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:29.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:29.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:29.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:29.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:29.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:29.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:29.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:29.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:29.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:29.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:29.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:29.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:29.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:29.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:29.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:29.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:29.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:29.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:29.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:29.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:29.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:29.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.839][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:29.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:29.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:29.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:29.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.849][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:29.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:29.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.854][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:29.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:29.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:29.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:29.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:29.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:29.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.876][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:29.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:29.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.881][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:29.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:29.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.886][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:29.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:29.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.891][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:29.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:29.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:29.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:29.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:29.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:29.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:29.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:29.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:29.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:29.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.916][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:29.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:29.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.921][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:29.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:29.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.926][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:29.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:29.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.931][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:29.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:29.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.936][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:29.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:29.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.941][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:29.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:29.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.947][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:29.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:29.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.952][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:29.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:29.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.957][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:29.958][private$selectFields]
biodb.TRACE[2025-05-24 16:03:29.959][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:29.960][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:29.962][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:29.963][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:29.964][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:29.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.967][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.968][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:29.969][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:29.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.971][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.973][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:29.974][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:29.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.976][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.978][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:29.979][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:29.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.981][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.982][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:29.984][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:29.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.986][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.987][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:29.989][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:29.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.991][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.992][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:29.993][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:29.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:29.996][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:29.997][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:29.998][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:30.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.001][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.002][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:30.003][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:30.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.006][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.007][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:30.008][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:30.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.010][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.012][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:30.013][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:30.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.015][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.016][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:30.018][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:30.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.020][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.022][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:30.023][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:30.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.025][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.027][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:30.028][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:30.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.030][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.032][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:30.033][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:30.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.035][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.037][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:30.038][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:30.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.040][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.042][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:30.043][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:30.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.045][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.046][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:30.048][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:30.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.050][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.051][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:30.053][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:30.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.055][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.056][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:30.058][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:30.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.060][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.061][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:30.063][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:30.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.065][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.066][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:30.067][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:30.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.071][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.072][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:30.073][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:30.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.076][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.077][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:30.079][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:30.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.081][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.083][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:30.084][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:30.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.087][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.088][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:30.089][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:30.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.092][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.093][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:30.095][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:30.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.097][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.098][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:30.100][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:30.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.102][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.103][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:30.105][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:30.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.107][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.108][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:30.109][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:30.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.112][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.113][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:30.114][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:30.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.117][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.118][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:30.119][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:30.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.121][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.123][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:30.124][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:30.125][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:30.126][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:30.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.129][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.130][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:30.131][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:30.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.133][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.135][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:30.136][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:30.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.138][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.140][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:30.141][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:30.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.143][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.144][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:30.146][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:30.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.148][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.149][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:30.150][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:30.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.153][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.154][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:30.155][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:30.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.158][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.159][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:30.160][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:30.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.162][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.164][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:30.165][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:30.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.167][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.168][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:30.170][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:30.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.172][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.173][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:30.175][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:30.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.177][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.178][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:30.180][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:30.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.182][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.183][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:30.185][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:30.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.187][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.188][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:30.189][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:30.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.192][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.193][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:30.194][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:30.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.196][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.198][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:30.199][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:30.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.201][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.203][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-05-24 16:03:30.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:30.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:30.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:30.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:30.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:30.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:30.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.219][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:30.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:30.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:30.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:30.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:30.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:30.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.234][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:30.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:30.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:30.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:30.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:30.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:30.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.249][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:30.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:30.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:30.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:30.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.258][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:30.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:30.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:30.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:30.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:30.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:30.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:30.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:30.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.287][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:30.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:30.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:30.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:30.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.297][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:30.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:30.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.302][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:30.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:30.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.307][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:30.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:30.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.312][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:30.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:30.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.318][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:30.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:30.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.323][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:30.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:30.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:30.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:30.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.333][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:30.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:30.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:30.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:30.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:30.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:30.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.347][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:30.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:30.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.352][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:30.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:30.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.357][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:30.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:30.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:30.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:30.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:30.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:30.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:30.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:30.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:30.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:30.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:30.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:30.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:30.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:30.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:30.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:30.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.398][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:30.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:30.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.403][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:30.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:30.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.408][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:30.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:30.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.413][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:30.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:30.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.418][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:30.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:30.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.423][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:30.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:30.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.428][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:30.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:30.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.433][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:30.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:30.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.439][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:30.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:30.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.444][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:30.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:30.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.449][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:30.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:30.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.466][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [175609559, 1-acetoxycyclohexa-3,5-diene-1,2-dicarboxylic acid, 1-acetyloxycyclohexa-3,5-diene-1,2-dicarboxylic acid, 1-acetyloxycyclohexa-3,5-diene-1,2-dicarboxylic acid, 1-acetyloxycyclohexa-3,5-diene-1,2-dicarboxylic acid, ...].
biodb.DEBUG[2025-05-24 16:03:30.467][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:30.468][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:30.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:30.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:30.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:30.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:30.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:30.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:30.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:30.499][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:30.503][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:30.505][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-05-24 16:03:30.507][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:30.508][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-05-24 16:03:30.510][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:30.512][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:30.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:30.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:30.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:30.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:30.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:30.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:30.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:30.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:30.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:30.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:30.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:30.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:30.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:30.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:30.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:30.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:30.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:30.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:30.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:30.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:30.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.561][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:30.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:30.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.566][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:30.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:30.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:30.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:30.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.576][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:30.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:30.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:30.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:30.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.586][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:30.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:30.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.591][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:30.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:30.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:30.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:30.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.601][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:30.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:30.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:30.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:30.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:30.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:30.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.616][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:30.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:30.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.621][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:30.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:30.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:30.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:30.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:30.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:30.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:30.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:30.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:30.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:30.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.646][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:30.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:30.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.651][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:30.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:30.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.656][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:30.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:30.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.661][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:30.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:30.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.666][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:30.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:30.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.671][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:30.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:30.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.676][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:30.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:30.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.681][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:30.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:30.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.686][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:30.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:30.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.691][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:30.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:30.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.704][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:30.705][private$selectFields]
biodb.TRACE[2025-05-24 16:03:30.706][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:30.707][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:30.709][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:30.710][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:30.711][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:30.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.714][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.715][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:30.717][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:30.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.719][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.720][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:30.722][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:30.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.724][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.725][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:30.727][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:30.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.729][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.730][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:30.732][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:30.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.734][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.735][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:30.737][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:30.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.739][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.740][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:30.742][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:30.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.744][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.745][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:30.747][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:30.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.749][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.750][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:30.752][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:30.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.754][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.755][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:30.757][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:30.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.759][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.760][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:30.762][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:30.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.764][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.765][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:30.767][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:30.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.769][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.771][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:30.772][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:30.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.774][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.775][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:30.777][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:30.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.779][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.780][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:30.782][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:30.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.784][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.785][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:30.787][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:30.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.789][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.790][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:30.792][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:30.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.794][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.795][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:30.797][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:30.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.799][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.800][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:30.801][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:30.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.804][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.805][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:30.806][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:30.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.809][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.810][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:30.811][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:30.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.814][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.815][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:30.817][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:30.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.819][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.820][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:30.821][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:30.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.824][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.825][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:30.827][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:30.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.829][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.830][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:30.832][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:30.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.834][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.835][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:30.837][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:30.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.839][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.840][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:30.842][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:30.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.844][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.845][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:30.847][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:30.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.849][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.850][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:30.851][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:30.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.854][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.855][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:30.856][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:30.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.859][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.860][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:30.861][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:30.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.864][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.865][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:30.866][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:30.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.869][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.870][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:30.871][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:30.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.874][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.875][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:30.876][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:30.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.878][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.880][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:30.881][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:30.883][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:30.884][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:30.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.886][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.888][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:30.889][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:30.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.891][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.892][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:30.894][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:30.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.896][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.897][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:30.899][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:30.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.901][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.902][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:30.904][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:30.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.906][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.907][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:30.909][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:30.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.911][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.912][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:30.914][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:30.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.916][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.917][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:30.918][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:30.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.921][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.922][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:30.923][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:30.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.926][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.927][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:30.928][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:30.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.931][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.932][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:30.933][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:30.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.936][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.937][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:30.938][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:30.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.940][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.942][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:30.943][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:30.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.945][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.947][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:30.948][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:30.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.950][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.951][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:30.953][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:30.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.955][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.956][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:30.958][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:30.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.960][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.961][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-05-24 16:03:30.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:30.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:30.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:30.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:30.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:30.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:30.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:30.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:30.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:30.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:30.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.988][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:30.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:30.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:30.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:30.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:30.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:30.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:31.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:31.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.003][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:31.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:31.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:31.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:31.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:31.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:31.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:31.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:31.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.024][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:31.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:31.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:31.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:31.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:31.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:31.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.039][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:31.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:31.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.044][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:31.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:31.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:31.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:31.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.054][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:31.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:31.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.059][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:31.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:31.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.064][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:31.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:31.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:31.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:31.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:31.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:31.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:31.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:31.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:31.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:31.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:31.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:31.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.095][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:31.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:31.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.100][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:31.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:31.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.105][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:31.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:31.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.117][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:31.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:31.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:31.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:31.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:31.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:31.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:31.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:31.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:31.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:31.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:31.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:31.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:31.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:31.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.154][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:31.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:31.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.159][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:31.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:31.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.164][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:31.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:31.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.169][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:31.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:31.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:31.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:31.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:31.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:31.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.184][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:31.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:31.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.189][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:31.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:31.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.194][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:31.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:31.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.199][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:31.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:31.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.204][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:31.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:31.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.209][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:31.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:31.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.226][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [175637135, 5-fluoro-8-isopropyl-quinolin-2-amine, 5-fluoro-8-propan-2-yl-2-quinolinamine, 5-fluoro-8-propan-2-ylquinolin-2-amine, 5-fluoranyl-8-propan-2-yl-quinolin-2-amine, ...].
biodb.DEBUG[2025-05-24 16:03:31.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:31.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:31.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:31.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:31.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:31.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:31.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:31.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:31.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:31.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:31.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:31.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.251][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:31.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:31.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.256][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:31.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:31.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.261][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:31.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:31.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.266][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:31.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:31.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.271][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:31.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:31.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.276][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:31.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:31.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.281][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:31.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:31.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:31.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:31.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:31.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:31.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:31.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:31.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.301][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:31.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:31.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.306][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:31.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:31.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:31.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:31.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:31.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:31.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:31.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:31.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:31.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:31.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.331][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:31.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:31.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.336][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:31.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:31.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:31.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:31.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:31.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:31.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:31.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:31.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:31.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:31.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.360][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:31.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:31.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.365][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:31.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:31.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.370][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:31.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:31.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:31.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:31.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.380][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:31.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:31.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.385][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:31.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:31.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.390][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:31.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:31.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.395][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:31.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:31.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.400][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:31.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:31.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.405][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:31.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:31.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.410][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:31.411][private$selectFields]
biodb.TRACE[2025-05-24 16:03:31.412][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:31.413][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:31.415][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:31.416][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:31.417][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:31.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.419][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.421][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:31.422][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:31.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.424][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.425][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:31.427][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:31.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.429][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.430][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:31.432][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:31.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.434][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.435][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:31.436][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:31.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.439][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.440][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:31.441][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:31.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.444][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.445][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:31.446][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:31.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.448][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.450][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:31.451][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:31.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.453][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.455][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:31.456][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:31.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.458][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.459][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:31.461][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:31.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.463][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.464][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:31.465][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:31.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.468][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.469][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:31.470][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:31.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.473][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.474][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:31.475][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:31.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.477][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.479][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:31.480][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:31.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.482][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.483][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:31.485][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:31.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.487][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.488][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:31.490][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:31.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.492][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.493][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:31.495][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:31.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.497][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.498][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:31.500][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:31.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.502][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.503][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:31.505][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:31.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.507][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.508][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:31.510][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:31.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.512][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.513][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:31.514][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:31.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.517][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.518][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:31.526][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:31.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.529][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.530][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:31.532][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:31.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.534][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.536][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:31.537][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:31.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.539][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.541][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:31.542][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:31.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.544][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.546][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:31.547][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:31.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.549][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.550][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:31.552][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:31.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.554][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.555][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:31.557][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:31.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.559][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.560][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:31.562][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:31.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.564][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.565][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:31.567][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:31.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.569][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.570][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:31.572][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:31.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.574][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.575][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:31.577][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:31.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.579][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.580][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:31.582][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:31.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.584][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.585][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:31.587][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:31.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.589][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.590][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:31.591][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:31.593][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:31.594][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:31.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.596][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.598][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:31.599][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:31.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.601][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.603][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:31.604][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:31.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.606][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.607][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:31.609][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:31.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.611][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.612][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:31.614][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:31.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.616][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.617][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:31.619][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:31.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.621][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.622][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:31.624][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:31.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.626][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.627][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:31.628][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:31.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.631][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.632][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:31.633][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:31.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.636][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.637][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:31.638][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:31.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.641][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.642][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:31.643][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:31.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.646][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.647][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:31.648][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:31.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.650][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.652][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:31.653][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:31.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.655][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.657][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:31.658][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:31.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.660][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.662][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:31.663][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:31.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.665][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.666][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:31.668][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:31.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.670][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.671][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-05-24 16:03:31.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:31.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:31.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:31.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:31.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:31.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:31.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:31.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:31.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:31.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:31.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:31.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:31.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:31.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:31.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:31.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:31.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:31.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:31.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:31.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:31.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:31.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:31.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:31.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:31.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:31.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:31.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:31.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:31.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:31.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:31.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:31.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:31.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:31.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:31.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:31.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:31.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.765][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:31.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:31.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.769][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:31.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:31.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.774][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:31.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:31.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:31.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:31.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:31.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:31.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:31.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:31.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.795][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:31.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:31.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.800][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:31.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:31.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:31.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:31.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.810][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:31.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:31.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.815][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:31.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:31.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.820][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:31.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:31.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:31.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:31.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:31.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:31.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:31.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:31.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.840][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:31.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:31.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:31.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:31.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:31.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:31.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.856][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:31.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:31.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.861][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:31.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:31.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.866][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:31.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:31.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.871][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:31.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:31.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.876][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:31.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:31.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.881][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:31.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:31.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.886][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:31.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:31.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.891][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:31.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:31.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.896][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:31.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:31.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.902][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:31.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:31.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.907][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:31.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:31.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.912][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:31.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:31.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.929][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [175636749, (2S)-5'-methoxy-2,3-dimethyl-spiro[aziridin-1-ium-1,2'-benzotriazol-2-ium], (2S)-5'-methoxy-2,3-dimethylspiro[aziridin-1-ium-1,2'-benzotriazol-2-ium], (2S)-5'-methoxy-2,3-dimethylspiro[aziridin-1-ium-1,2'-benzotriazol-2-ium], (2S)-5'-methoxy-2,3-dimethyl-spiro[aziridin-1-ium-1,2'-benzotriazol-2-ium], ...].
biodb.DEBUG[2025-05-24 16:03:31.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:31.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:31.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:31.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:31.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:31.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:31.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:31.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:31.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:31.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:31.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:31.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:31.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:31.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:31.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:31.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:31.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:31.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:31.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:31.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:31.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:31.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:31.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:31.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.994][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:31.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:31.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:31.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:31.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:32.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:32.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:32.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:32.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.009][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:32.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:32.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.014][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:32.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:32.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.019][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:32.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:32.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.024][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:32.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:32.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:32.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:32.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.034][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:32.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:32.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.039][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:32.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:32.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.044][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:32.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:32.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.049][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:32.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:32.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:32.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:32.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.059][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:32.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:32.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:32.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:32.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:32.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:32.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.074][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:32.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:32.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.079][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:32.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:32.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.084][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:32.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:32.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.089][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:32.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:32.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.094][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:32.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:32.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.100][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:32.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:32.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.105][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:32.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:32.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.110][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:32.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:32.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.115][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:32.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:32.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.120][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:32.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:32.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.125][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:32.126][private$selectFields]
biodb.TRACE[2025-05-24 16:03:32.127][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:32.128][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:32.130][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:32.131][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:32.132][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:32.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.135][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.136][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:32.137][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:32.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.140][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.141][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:32.142][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:32.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.144][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.146][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:32.147][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:32.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.149][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.151][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:32.152][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:32.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.154][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.156][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:32.157][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:32.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.159][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.160][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:32.162][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:32.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.164][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.165][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:32.167][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:32.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.169][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.170][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:32.172][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:32.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.174][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.175][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:32.176][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:32.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.179][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.180][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:32.181][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:32.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.184][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.185][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:32.186][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:32.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.189][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.190][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:32.191][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:32.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.194][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.195][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:32.196][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:32.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.198][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.200][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:32.201][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:32.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.203][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.204][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:32.206][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:32.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.208][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.209][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:32.211][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:32.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.213][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.214][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:32.215][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:32.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.218][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.219][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:32.220][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:32.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.223][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.224][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:32.225][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:32.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.228][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.229][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:32.230][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:32.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.232][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.234][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:32.235][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:32.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.237][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.239][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:32.240][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:32.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.242][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.243][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:32.245][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:32.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.247][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.248][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:32.250][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:32.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.252][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.253][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:32.254][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:32.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.257][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.258][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:32.259][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:32.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.262][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.263][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:32.264][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:32.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.267][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.268][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:32.270][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:32.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.272][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.273][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:32.274][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:32.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.277][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.278][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:32.279][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:32.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.282][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.283][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:32.284][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:32.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.287][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.288][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:32.289][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:32.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.292][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.293][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:32.294][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:32.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.297][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.298][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:32.299][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:32.301][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:32.302][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:32.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.304][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.306][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:32.307][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:32.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.309][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.310][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:32.312][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:32.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.314][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.315][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:32.317][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:32.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.319][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.320][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:32.322][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:32.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.324][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.325][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:32.327][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:32.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.329][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.330][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:32.332][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:32.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.334][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.335][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:32.336][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:32.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.339][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.340][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:32.341][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:32.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.344][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.345][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:32.346][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:32.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.349][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.357][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:32.359][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:32.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.361][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.363][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:32.364][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:32.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.367][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.368][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:32.369][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:32.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.372][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.373][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:32.374][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:32.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.377][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.378][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:32.379][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:32.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.382][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.383][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:32.385][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:32.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.387][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.389][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-05-24 16:03:32.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:32.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:32.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:32.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:32.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:32.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:32.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.406][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:32.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:32.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.411][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:32.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:32.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:32.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:32.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:32.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:32.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:32.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:32.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:32.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:32.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:32.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:32.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:32.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:32.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:32.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:32.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:32.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:32.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:32.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:32.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:32.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:32.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:32.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:32.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:32.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:32.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:32.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:32.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.487][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:32.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:32.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.492][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:32.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:32.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.498][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:32.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:32.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:32.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:32.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.510][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:32.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:32.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:32.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:32.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:32.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:32.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:32.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:32.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.532][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:32.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:32.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.537][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:32.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:32.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.542][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:32.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:32.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.547][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:32.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:32.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:32.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:32.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:32.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:32.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:32.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:32.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:32.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:32.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:32.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:32.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:32.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:32.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.583][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:32.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:32.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.588][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:32.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:32.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.593][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:32.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:32.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:32.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:32.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.603][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:32.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:32.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.607][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:32.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:32.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.612][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:32.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:32.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.618][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:32.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:32.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.623][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:32.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:32.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.628][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:32.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:32.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.633][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:32.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:32.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.638][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:32.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:32.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.655][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [175622121, 2-ethyl-4-(oxetan-3-ylamino)pyrimidine-5-carbonitrile, 2-ethyl-4-(3-oxetanylamino)-5-pyrimidinecarbonitrile, 2-ethyl-4-(oxetan-3-ylamino)pyrimidine-5-carbonitrile, 2-ethyl-4-(oxetan-3-ylamino)pyrimidine-5-carbonitrile, ...].
biodb.DEBUG[2025-05-24 16:03:32.656][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:32.658][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:32.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:32.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:32.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:32.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:32.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:32.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:32.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:32.683][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:32.687][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:32.689][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-05-24 16:03:32.691][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:32.692][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-05-24 16:03:32.694][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:32.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:32.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:32.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:32.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:32.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:32.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:32.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:32.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:32.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:32.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:32.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:32.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:32.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:32.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:32.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:32.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:32.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:32.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:32.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:32.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.741][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:32.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:32.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:32.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:32.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:32.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:32.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:32.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:32.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:32.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:32.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.765][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:32.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:32.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.770][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:32.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:32.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.775][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:32.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:32.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:32.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:32.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.792][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:32.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:32.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:32.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:32.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:32.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:32.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.807][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:32.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:32.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.812][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:32.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:32.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:32.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:32.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:32.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:32.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:32.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:32.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:32.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:32.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.837][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:32.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:32.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.843][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:32.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:32.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.848][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:32.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:32.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:32.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:32.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.857][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:32.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:32.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.862][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:32.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:32.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.867][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:32.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:32.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.872][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:32.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:32.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.877][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:32.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:32.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.882][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:32.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:32.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.887][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:32.889][private$selectFields]
biodb.TRACE[2025-05-24 16:03:32.890][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:32.891][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:32.892][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:32.893][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:32.895][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:32.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.897][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.898][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:32.899][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:32.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.902][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.903][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:32.904][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:32.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.906][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.908][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:32.909][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:32.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.911][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.912][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:32.914][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:32.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.916][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.917][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:32.918][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:32.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.921][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.922][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:32.923][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:32.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.926][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.927][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:32.928][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:32.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.930][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.931][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:32.933][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:32.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.935][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.936][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:32.937][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:32.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.940][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.941][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:32.942][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:32.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.945][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.946][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:32.947][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:32.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.949][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.950][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:32.952][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:32.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.954][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.955][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:32.957][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:32.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.959][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.960][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:32.961][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:32.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.964][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.965][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:32.966][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:32.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.968][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.969][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:32.971][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:32.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.973][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.974][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:32.976][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:32.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.978][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.979][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:32.980][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:32.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.983][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.984][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:32.985][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:32.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.987][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.989][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:32.990][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:32.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.992][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.993][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:32.995][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:32.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:32.997][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:32.998][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:32.999][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:33.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.002][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.003][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:33.004][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:33.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.006][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.007][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:33.009][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:33.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.011][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.012][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:33.013][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:33.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.016][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.017][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:33.018][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:33.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.020][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.022][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:33.023][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:33.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.025][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.026][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:33.028][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:33.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.030][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.031][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:33.032][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:33.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.034][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.036][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:33.037][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:33.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.039][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.040][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:33.042][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:33.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.044][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.045][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:33.046][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:33.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.049][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.050][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:33.051][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:33.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.053][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.054][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:33.056][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:33.057][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:33.058][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:33.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.060][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.061][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:33.063][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:33.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.065][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.066][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:33.067][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:33.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.070][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.071][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:33.072][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:33.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.074][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.076][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:33.077][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:33.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.079][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.080][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:33.081][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:33.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.084][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.085][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:33.086][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:33.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.088][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.090][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:33.091][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:33.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.093][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.094][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:33.095][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:33.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.098][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.099][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:33.100][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:33.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.102][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.104][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:33.105][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:33.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.107][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.108][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:33.109][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:33.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.112][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.113][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:33.114][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:33.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.116][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.118][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:33.119][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:33.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.121][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.122][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:33.123][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:33.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.126][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.127][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:33.128][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:33.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.130][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.132][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-05-24 16:03:33.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:33.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:33.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:33.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:33.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:33.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:33.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:33.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:33.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:33.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:33.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:33.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:33.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:33.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:33.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.167][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:33.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:33.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.172][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:33.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:33.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:33.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:33.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:33.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:33.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:33.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:33.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:33.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:33.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:33.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:33.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.207][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:33.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:33.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:33.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:33.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:33.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:33.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:33.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:33.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.227][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:33.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:33.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.232][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:33.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:33.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.237][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:33.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:33.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:33.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:33.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:33.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:33.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:33.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:33.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:33.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:33.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.261][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:33.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:33.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:33.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:33.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.271][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:33.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:33.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.275][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:33.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:33.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.280][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:33.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:33.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:33.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:33.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:33.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:33.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:33.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:33.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:33.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:33.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:33.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:33.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:33.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:33.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.314][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:33.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:33.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.319][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:33.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:33.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.324][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:33.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:33.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.329][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:33.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:33.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:33.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:33.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.339][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:33.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:33.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.344][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:33.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:33.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.349][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:33.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:33.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.354][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:33.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:33.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:33.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:33.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.364][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:33.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:33.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.368][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:33.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:33.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.385][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [175614838, 2-(difluoromethyl)-3-methyl-indazole-6-carboxylic acid, 2-(difluoromethyl)-3-methyl-6-indazolecarboxylic acid, 2-(difluoromethyl)-3-methylindazole-6-carboxylic acid, 2-[bis(fluoranyl)methyl]-3-methyl-indazole-6-carboxylic acid, ...].
biodb.DEBUG[2025-05-24 16:03:33.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:33.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:33.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:33.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:33.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:33.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:33.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:33.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:33.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:33.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:33.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:33.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:33.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:33.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.414][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:33.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:33.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.418][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:33.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:33.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:33.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:33.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:33.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:33.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:33.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:33.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:33.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:33.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:33.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:33.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:33.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:33.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:33.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:33.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.458][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:33.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:33.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.463][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:33.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:33.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.468][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:33.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:33.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:33.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:33.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:33.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:33.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:33.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:33.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.487][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:33.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:33.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.492][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:33.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:33.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:33.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:33.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:33.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:33.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:33.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:33.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:33.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:33.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.517][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:33.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:33.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.522][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:33.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:33.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.526][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:33.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:33.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.531][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:33.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:33.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.536][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:33.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:33.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.541][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:33.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:33.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.546][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:33.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:33.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.551][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:33.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:33.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.556][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:33.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:33.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.561][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:33.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:33.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.566][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:33.567][private$selectFields]
biodb.TRACE[2025-05-24 16:03:33.568][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:33.569][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:33.570][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:33.572][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:33.573][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:33.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.575][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.576][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:33.584][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:33.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.587][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.589][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:33.590][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:33.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.593][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.594][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:33.595][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:33.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.597][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.599][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:33.600][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:33.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.602][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.603][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:33.605][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:33.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.607][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.608][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:33.610][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:33.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.612][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.613][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:33.615][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:33.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.617][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.618][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:33.619][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:33.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.622][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.623][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:33.624][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:33.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.627][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.628][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:33.629][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:33.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.632][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.633][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:33.634][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:33.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.636][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.638][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:33.639][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:33.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.641][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.643][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:33.644][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:33.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.646][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.647][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:33.649][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:33.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.651][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.652][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:33.654][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:33.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.656][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.657][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:33.659][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:33.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.661][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.662][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:33.664][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:33.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.666][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.667][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:33.669][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:33.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.671][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.672][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:33.673][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:33.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.676][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.677][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:33.678][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:33.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.681][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.682][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:33.683][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:33.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.686][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.687][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:33.688][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:33.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.691][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.692][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:33.693][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:33.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.696][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.697][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:33.698][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:33.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.701][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.702][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:33.703][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:33.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.706][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.707][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:33.708][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:33.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.710][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.712][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:33.713][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:33.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.715][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.716][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:33.718][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:33.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.720][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.721][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:33.723][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:33.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.725][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.726][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:33.728][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:33.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.730][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.731][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:33.732][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:33.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.735][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.736][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:33.737][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:33.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.740][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.741][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:33.742][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:33.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.745][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.746][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:33.747][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:33.748][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:33.750][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:33.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.752][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.753][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:33.754][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:33.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.757][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.758][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:33.759][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:33.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.762][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.763][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:33.764][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:33.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.766][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.768][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:33.769][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:33.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.771][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.772][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:33.774][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:33.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.776][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.777][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:33.778][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:33.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.781][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.782][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:33.783][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:33.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.786][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.787][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:33.788][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:33.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.790][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.792][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:33.793][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:33.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.795][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.796][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:33.798][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:33.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.800][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.801][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:33.802][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:33.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.805][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.806][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:33.807][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:33.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.810][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.811][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:33.812][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:33.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.814][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.816][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:33.817][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:33.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.819][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.820][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:33.822][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:33.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.824][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.825][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-05-24 16:03:33.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:33.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:33.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:33.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:33.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:33.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:33.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:33.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:33.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.846][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:33.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:33.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:33.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:33.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.856][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:33.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:33.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:33.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:33.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:33.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:33.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:33.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:33.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:33.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:33.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:33.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:33.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:33.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:33.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:33.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:33.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.896][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:33.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:33.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:33.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:33.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:33.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:33.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.911][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:33.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:33.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.916][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:33.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:33.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.921][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:33.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:33.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.926][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:33.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:33.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:33.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:33.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:33.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:33.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:33.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:33.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:33.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:33.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:33.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:33.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:33.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:33.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.961][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:33.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:33.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.966][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:33.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:33.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.971][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:33.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:33.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:33.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:33.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:33.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:33.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:33.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:33.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:33.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:33.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.015][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:34.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:34.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.020][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:34.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:34.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.025][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:34.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:34.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.030][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:34.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:34.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.035][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:34.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:34.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:34.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:34.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:34.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:34.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.051][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:34.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:34.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.056][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:34.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:34.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.061][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:34.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:34.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.066][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:34.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:34.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.071][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:34.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:34.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.088][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [175610581, (1-ethyl-3-methyl-butoxy)-hydroxy-methoxy-phosphanylidene-lambda5-phosphane, hydroxy-methoxy-(5-methylhexan-3-yloxy)-phosphinidenephosphorane, hydroxy-methoxy-(5-methylhexan-3-yloxy)-phosphanylidene-lambda5-phosphane, methoxy-(5-methylhexan-3-yloxy)-oxidanyl-phosphanylidene-lambda5-phosphane, ...].
biodb.DEBUG[2025-05-24 16:03:34.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:34.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:34.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:34.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:34.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:34.100][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:34.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:34.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:34.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:34.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:34.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:34.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.113][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:34.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:34.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.118][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:34.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:34.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:34.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:34.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.128][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:34.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:34.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:34.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:34.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.137][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:34.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:34.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.142][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:34.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:34.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:34.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:34.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:34.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:34.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:34.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:34.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.162][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:34.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:34.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.167][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:34.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:34.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:34.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:34.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:34.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:34.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.181][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:34.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:34.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:34.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:34.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.191][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:34.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:34.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.196][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:34.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:34.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:34.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:34.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:34.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:34.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.220][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:34.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:34.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.225][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:34.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:34.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:34.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:34.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.234][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:34.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:34.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.239][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:34.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:34.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.244][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:34.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:34.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.249][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:34.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:34.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.254][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:34.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:34.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.259][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:34.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:34.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.264][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:34.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:34.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.269][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:34.270][private$selectFields]
biodb.TRACE[2025-05-24 16:03:34.271][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:34.272][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:34.273][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:34.274][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:34.276][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:34.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.279][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.280][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:34.281][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:34.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.284][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.285][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:34.286][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:34.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.288][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.290][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:34.291][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:34.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.293][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.295][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:34.296][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:34.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.298][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.299][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:34.301][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:34.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.303][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.304][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:34.306][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:34.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.308][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.309][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:34.311][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:34.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.313][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.315][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:34.316][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:34.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.318][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.319][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:34.321][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:34.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.323][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.324][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:34.326][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:34.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.328][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.329][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.331][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.333][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.334][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:34.336][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:34.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.338][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.339][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:34.340][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:34.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.343][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.344][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:34.345][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:34.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.348][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.349][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:34.350][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:34.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.352][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.354][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:34.355][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:34.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.357][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.358][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:34.360][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:34.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.362][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.363][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:34.365][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:34.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.367][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.368][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:34.369][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:34.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.372][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.373][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:34.374][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:34.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.377][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.378][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:34.379][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:34.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.382][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.383][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:34.384][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:34.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.386][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.388][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:34.389][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:34.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.397][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.399][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:34.400][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:34.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.403][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.404][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:34.406][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:34.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.408][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.409][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:34.411][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:34.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.413][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.414][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:34.416][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:34.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.418][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.419][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.420][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.423][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.424][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:34.425][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:34.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.428][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.429][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:34.430][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:34.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.432][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.434][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:34.435][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:34.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.437][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.439][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:34.440][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:34.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.442][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.444][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:34.445][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:34.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.447][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.449][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:34.450][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:34.451][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:34.452][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:34.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.455][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.456][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:34.457][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:34.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.460][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.461][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:34.462][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:34.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.465][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.466][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:34.467][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:34.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.469][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.471][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:34.472][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:34.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.474][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.475][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:34.477][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:34.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.479][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.480][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:34.482][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:34.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.484][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.485][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:34.487][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:34.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.489][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.490][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:34.491][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:34.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.494][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.495][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:34.496][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:34.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.498][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.500][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:34.501][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:34.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.503][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.505][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.506][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.508][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.509][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:34.511][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:34.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.513][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.514][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:34.516][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:34.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.518][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.519][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:34.520][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:34.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.523][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.524][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:34.525][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:34.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.528][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.529][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-05-24 16:03:34.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:34.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:34.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:34.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:34.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:34.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:34.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:34.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:34.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:34.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:34.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:34.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:34.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.561][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:34.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:34.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.566][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:34.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:34.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:34.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:34.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.576][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:34.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:34.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:34.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:34.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:34.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:34.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:34.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:34.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:34.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:34.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:34.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:34.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:34.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:34.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.610][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:34.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:34.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:34.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:34.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.620][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:34.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:34.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.625][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:34.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:34.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.630][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:34.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:34.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:34.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:34.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:34.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:34.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:34.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:34.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:34.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:34.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.655][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:34.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:34.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:34.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:34.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.665][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:34.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:34.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.670][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:34.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:34.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.675][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:34.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:34.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:34.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:34.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:34.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:34.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:34.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:34.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.711][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:34.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:34.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.716][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:34.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:34.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.721][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:34.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:34.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:34.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:34.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:34.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:34.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.736][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:34.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:34.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.741][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:34.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:34.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.746][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:34.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:34.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.751][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:34.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:34.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.757][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:34.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:34.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.761][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:34.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:34.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.766][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:34.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:34.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.783][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [175609559, 1-acetoxycyclohexa-3,5-diene-1,2-dicarboxylic acid, 1-acetyloxycyclohexa-3,5-diene-1,2-dicarboxylic acid, 1-acetyloxycyclohexa-3,5-diene-1,2-dicarboxylic acid, 1-acetyloxycyclohexa-3,5-diene-1,2-dicarboxylic acid, ...].
biodb.DEBUG[2025-05-24 16:03:34.785][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:34.786][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-05-24 16:03:34.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:34.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:34.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:34.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:34.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:34.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:34.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:34.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:34.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:34.867][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:34.871][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:34.873][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-05-24 16:03:34.874][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:34.876][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-05-24 16:03:34.878][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:34.880][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:34.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:34.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:34.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:34.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:34.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:34.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:34.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:34.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:34.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:34.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:34.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:34.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:34.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:34.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:34.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:34.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:34.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.920][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:34.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:34.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.925][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:34.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:34.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:34.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:34.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.935][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:34.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:34.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:34.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:34.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.945][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:34.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:34.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:34.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:34.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.954][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:34.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:34.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.959][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:34.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:34.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:34.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:34.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:34.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:34.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.974][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:34.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:34.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.979][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:34.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:34.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.984][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:34.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:34.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.989][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:34.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:34.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:34.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:34.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:34.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:34.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:35.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:35.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:35.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:35.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:35.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:35.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.014][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:35.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:35.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.019][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:35.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:35.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.023][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:35.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:35.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.029][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:35.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:35.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.034][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:35.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:35.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.039][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:35.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:35.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.043][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:35.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:35.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.048][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:35.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:35.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.053][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:35.054][private$selectFields]
biodb.TRACE[2025-05-24 16:03:35.055][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:35.056][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:35.057][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:35.059][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:35.060][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:35.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.062][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.063][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:35.065][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:35.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.067][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.068][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:35.069][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:35.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.072][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.073][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:35.074][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:35.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.076][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.078][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:35.079][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:35.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.081][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.082][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:35.084][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:35.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.086][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.087][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:35.088][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:35.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.091][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.092][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:35.093][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:35.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.095][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.096][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:35.098][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:35.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.100][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.101][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:35.102][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:35.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.105][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.106][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:35.107][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:35.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.109][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.111][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:35.112][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:35.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.114][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.115][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:35.117][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:35.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.119][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.120][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:35.121][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:35.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.123][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.125][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:35.126][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:35.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.128][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.129][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:35.131][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:35.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.133][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.134][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:35.135][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:35.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.138][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.139][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:35.140][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:35.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.142][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.144][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:35.145][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:35.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.147][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.148][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:35.150][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:35.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.152][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.153][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:35.154][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:35.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.157][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.158][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:35.159][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:35.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.161][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.163][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:35.164][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:35.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.166][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.167][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:35.169][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:35.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.171][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.172][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:35.173][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:35.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.176][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.177][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:35.178][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:35.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.180][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.181][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:35.183][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:35.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.185][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.186][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:35.187][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:35.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.190][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.191][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:35.192][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:35.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.194][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.196][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:35.197][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:35.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.199][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.200][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:35.202][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:35.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.204][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.205][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:35.213][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:35.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.216][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.217][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:35.219][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:35.220][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:35.221][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:35.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.224][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.225][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:35.226][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:35.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.228][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.229][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:35.231][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:35.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.233][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.234][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:35.236][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:35.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.238][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.239][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:35.240][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:35.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.243][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.244][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:35.245][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:35.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.248][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.249][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:35.251][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:35.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.253][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.254][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:35.255][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:35.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.258][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.259][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:35.260][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:35.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.263][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.264][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:35.265][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:35.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.268][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.269][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:35.270][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:35.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.273][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.274][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:35.275][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:35.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.278][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.279][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:35.280][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:35.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.283][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.284][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:35.285][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:35.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.288][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.289][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:35.290][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:35.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.292][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.294][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:35.295][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:35.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.297][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.299][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-05-24 16:03:35.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:35.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:35.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:35.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:35.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:35.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:35.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:35.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:35.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:35.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:35.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:35.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:35.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:35.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:35.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:35.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:35.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:35.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:35.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:35.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:35.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.351][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:35.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:35.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:35.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:35.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.361][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:35.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:35.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:35.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:35.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:35.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:35.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:35.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:35.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.382][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:35.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:35.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.387][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:35.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:35.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.392][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:35.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:35.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.397][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:35.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:35.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.402][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:35.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:35.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:35.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:35.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.412][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:35.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:35.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:35.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:35.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:35.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:35.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:35.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:35.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.432][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:35.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:35.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.437][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:35.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:35.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.442][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:35.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:35.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.447][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:35.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:35.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:35.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:35.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:35.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:35.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:35.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:35.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:35.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:35.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:35.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:35.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:35.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:35.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.483][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:35.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:35.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.488][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:35.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:35.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.493][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:35.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:35.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.498][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:35.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:35.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.503][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:35.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:35.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:35.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:35.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.513][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:35.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:35.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.518][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:35.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:35.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.523][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:35.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:35.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.529][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:35.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:35.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.534][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:35.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:35.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.539][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:35.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:35.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.556][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [175639468, (1Z,3Z)-5-(4-methoxyphenyl)penta-1,3-diene-1,4-diamine, (1Z,3Z)-5-(4-methoxyphenyl)penta-1,3-diene-1,4-diamine, (1Z,3Z)-5-(4-methoxyphenyl)penta-1,3-diene-1,4-diamine, (1Z,3Z)-5-(4-methoxyphenyl)penta-1,3-diene-1,4-diamine, ...].
biodb.DEBUG[2025-05-24 16:03:35.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:35.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:35.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:35.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:35.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:35.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:35.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:35.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:35.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:35.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:35.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:35.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:35.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:35.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:35.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:35.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:35.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:35.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:35.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:35.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:35.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:35.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:35.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:35.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.610][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:35.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:35.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:35.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:35.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.628][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:35.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:35.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:35.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:35.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.639][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:35.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:35.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.644][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:35.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:35.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.649][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:35.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:35.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:35.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:35.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:35.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:35.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:35.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:35.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.669][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:35.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:35.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.674][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:35.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:35.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:35.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:35.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:35.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:35.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:35.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:35.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:35.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:35.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.700][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:35.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:35.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.705][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:35.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:35.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:35.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:35.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.715][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:35.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:35.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.720][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:35.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:35.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.725][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:35.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:35.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.730][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:35.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:35.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.735][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:35.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:35.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.740][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:35.741][private$selectFields]
biodb.TRACE[2025-05-24 16:03:35.742][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:35.743][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:35.744][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:35.746][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:35.747][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:35.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.750][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.751][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:35.752][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:35.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.755][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.756][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:35.757][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:35.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.760][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.761][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:35.762][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:35.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.764][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.766][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:35.767][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:35.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.769][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.771][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:35.772][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:35.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.774][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.776][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:35.777][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:35.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.779][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.781][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:35.782][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:35.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.784][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.785][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:35.787][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:35.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.789][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.790][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:35.792][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:35.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.794][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.795][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:35.797][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:35.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.799][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.800][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:35.802][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:35.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.804][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.805][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:35.806][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:35.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.809][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.810][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:35.811][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:35.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.814][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.815][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:35.816][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:35.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.819][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.820][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:35.821][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:35.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.824][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.825][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:35.826][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:35.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.829][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.830][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:35.831][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:35.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.834][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.835][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:35.836][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:35.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.839][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.840][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:35.841][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:35.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.844][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.845][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:35.846][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:35.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.848][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.850][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:35.851][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:35.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.853][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.854][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:35.856][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:35.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.858][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.859][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:35.861][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:35.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.863][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.864][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:35.866][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:35.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.868][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.869][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:35.870][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:35.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.873][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.874][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:35.875][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:35.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.878][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.879][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:35.880][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:35.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.883][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.884][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:35.885][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:35.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.887][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.889][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:35.890][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:35.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.892][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.894][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:35.895][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:35.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.897][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.899][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:35.900][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:35.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.903][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.904][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:35.905][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:35.906][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:35.908][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:35.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.910][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.911][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:35.913][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:35.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.915][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.916][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:35.918][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:35.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.920][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.921][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:35.922][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:35.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.925][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.926][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:35.927][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:35.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.930][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.931][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:35.932][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:35.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.935][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.936][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:35.937][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:35.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.940][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.941][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:35.942][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:35.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.945][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.946][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:35.947][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:35.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.949][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.951][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:35.952][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:35.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.954][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.956][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:35.957][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:35.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.959][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.961][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:35.962][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:35.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.964][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.965][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:35.967][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:35.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.969][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.970][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:35.972][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:35.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.974][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.975][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:35.977][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:35.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.979][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.980][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:35.981][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:35.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.984][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.985][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-05-24 16:03:35.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:35.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:35.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:35.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:35.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:35.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:35.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:35.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:35.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:36.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:36.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:36.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:36.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.012][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:36.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:36.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:36.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:36.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.022][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:36.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:36.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:36.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:36.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:36.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:36.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.046][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:36.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:36.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.051][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:36.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:36.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:36.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:36.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:36.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:36.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:36.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:36.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:36.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:36.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:36.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:36.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:36.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:36.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.088][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:36.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:36.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.093][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:36.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:36.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.098][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:36.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:36.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.104][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:36.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:36.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.109][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:36.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:36.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:36.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:36.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.119][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:36.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:36.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.124][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:36.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:36.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.129][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:36.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:36.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.134][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:36.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:36.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.139][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:36.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:36.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.144][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:36.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:36.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:36.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:36.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:36.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:36.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:36.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:36.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:36.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:36.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:36.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:36.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:36.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:36.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.183][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:36.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:36.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.189][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:36.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:36.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.194][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:36.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:36.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.200][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:36.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:36.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.205][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:36.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:36.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.211][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:36.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:36.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.217][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:36.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:36.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.222][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:36.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:36.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.227][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:36.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:36.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.232][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:36.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:36.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.237][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:36.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:36.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.242][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:36.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:36.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.259][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [175636749, (2S)-5'-methoxy-2,3-dimethyl-spiro[aziridin-1-ium-1,2'-benzotriazol-2-ium], (2S)-5'-methoxy-2,3-dimethylspiro[aziridin-1-ium-1,2'-benzotriazol-2-ium], (2S)-5'-methoxy-2,3-dimethylspiro[aziridin-1-ium-1,2'-benzotriazol-2-ium], (2S)-5'-methoxy-2,3-dimethyl-spiro[aziridin-1-ium-1,2'-benzotriazol-2-ium], ...].
biodb.DEBUG[2025-05-24 16:03:36.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:36.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:36.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:36.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:36.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:36.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:36.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:36.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:36.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:36.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:36.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:36.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:36.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:36.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:36.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:36.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:36.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:36.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:36.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:36.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:36.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:36.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:36.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:36.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:36.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:36.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:36.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:36.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:36.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:36.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:36.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:36.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.333][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:36.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:36.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.338][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:36.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:36.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.343][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:36.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:36.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:36.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:36.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:36.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:36.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:36.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:36.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.364][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:36.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:36.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.369][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:36.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:36.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:36.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:36.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:36.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:36.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:36.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:36.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.389][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:36.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:36.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.394][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:36.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:36.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.399][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:36.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:36.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.404][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:36.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:36.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:36.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:36.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.414][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:36.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:36.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.419][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:36.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:36.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.424][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:36.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:36.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.429][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:36.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:36.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.434][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:36.435][private$selectFields]
biodb.TRACE[2025-05-24 16:03:36.436][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:36.437][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:36.438][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:36.440][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:36.441][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:36.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.443][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.445][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:36.446][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:36.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.448][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.449][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:36.451][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:36.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.463][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.465][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:36.466][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:36.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.469][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.470][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:36.472][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:36.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.474][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.475][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:36.477][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:36.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.479][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.480][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:36.482][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:36.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.484][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.485][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:36.487][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:36.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.489][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.490][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:36.491][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:36.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.494][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.495][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:36.496][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:36.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.499][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.500][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:36.501][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:36.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.504][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.505][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:36.506][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:36.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.509][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.510][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:36.511][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:36.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.514][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.515][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:36.516][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:36.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.519][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.520][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:36.521][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:36.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.523][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.525][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:36.526][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:36.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.529][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.530][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:36.531][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:36.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.534][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.535][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:36.536][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:36.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.538][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.540][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:36.541][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:36.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.543][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.545][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:36.546][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:36.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.548][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.550][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:36.551][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:36.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.553][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.555][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:36.556][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:36.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.558][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.559][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:36.561][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:36.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.563][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.564][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:36.566][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:36.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.568][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.569][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:36.570][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:36.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.573][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.574][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:36.575][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:36.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.578][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.579][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:36.580][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:36.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.583][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.584][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:36.586][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:36.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.588][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.589][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:36.590][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:36.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.593][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.594][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:36.595][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:36.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.598][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.599][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:36.600][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:36.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.602][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.603][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:36.605][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:36.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.607][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.608][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:36.609][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:36.611][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:36.612][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:36.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.614][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.615][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:36.617][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:36.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.619][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.620][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:36.621][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:36.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.624][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.625][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:36.626][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:36.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.628][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.630][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:36.631][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:36.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.633][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.634][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:36.636][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:36.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.638][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.639][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:36.640][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:36.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.643][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.644][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:36.645][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:36.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.647][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.649][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:36.650][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:36.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.652][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.653][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:36.655][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:36.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.657][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.658][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:36.660][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:36.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.662][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.663][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:36.664][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:36.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.667][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.668][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:36.669][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:36.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.671][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.673][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:36.674][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:36.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.676][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.677][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:36.679][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:36.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.681][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.682][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:36.683][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:36.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.686][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.687][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-05-24 16:03:36.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:36.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:36.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:36.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:36.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:36.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:36.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:36.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:36.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:36.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:36.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:36.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:36.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:36.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:36.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.722][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:36.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:36.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.727][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:36.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:36.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:36.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:36.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:36.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:36.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:36.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:36.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:36.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:36.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:36.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:36.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:36.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:36.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:36.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:36.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:36.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:36.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:36.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:36.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.783][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:36.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:36.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.789][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:36.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:36.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.794][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:36.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:36.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:36.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:36.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:36.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:36.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:36.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:36.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:36.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:36.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:36.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:36.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:36.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:36.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.829][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:36.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:36.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.834][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:36.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:36.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.839][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:36.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:36.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:36.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:36.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:36.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:36.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:36.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:36.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:36.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:36.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:36.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:36.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:36.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:36.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.882][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:36.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:36.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.887][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:36.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:36.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.892][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:36.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:36.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:36.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:36.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.902][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:36.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:36.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.907][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:36.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:36.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.912][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:36.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:36.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.917][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:36.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:36.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.922][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:36.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:36.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.927][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:36.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:36.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.932][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:36.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:36.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.937][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:36.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:36.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:36.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:36.954][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [175636537, 6,6-difluoro-1-(isopropoxymethyl)-2-methyl-bicyclo[3.1.0]hexane, 6,6-difluoro-2-methyl-1-(propan-2-yloxymethyl)bicyclo[3.1.0]hexane, 6,6-difluoro-2-methyl-1-(propan-2-yloxymethyl)bicyclo[3.1.0]hexane, 6,6-bis(fluoranyl)-2-methyl-1-(propan-2-yloxymethyl)bicyclo[3.1.0]hexane, ...].
biodb.DEBUG[2025-05-24 16:03:36.956][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:36.957][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:36.962][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:36.963][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:36.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:36.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:36.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:36.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:36.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:36.982][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:36.986][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:36.988][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-05-24 16:03:36.989][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:36.991][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-05-24 16:03:36.993][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:36.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:36.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:36.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:37.003][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:37.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:37.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:37.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:37.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:37.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:37.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:37.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:37.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:37.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:37.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.022][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:37.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:37.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:37.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:37.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:37.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:37.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.038][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:37.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:37.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:37.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:37.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:37.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:37.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.053][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:37.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:37.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:37.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:37.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:37.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:37.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.067][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:37.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:37.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.072][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:37.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:37.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.077][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:37.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:37.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:37.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:37.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.087][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:37.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:37.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:37.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:37.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.097][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:37.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:37.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.102][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:37.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:37.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:37.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:37.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:37.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:37.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:37.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:37.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:37.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:37.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.127][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:37.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:37.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.132][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:37.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:37.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:37.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:37.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.141][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:37.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:37.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.146][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:37.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:37.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.151][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:37.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:37.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.156][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:37.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:37.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.161][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:37.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:37.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.166][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:37.167][private$selectFields]
biodb.TRACE[2025-05-24 16:03:37.168][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:37.169][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:37.171][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:37.172][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:37.173][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:37.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.175][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.177][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:37.178][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:37.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.180][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.182][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:37.183][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:37.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.185][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.186][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:37.188][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:37.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.190][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.191][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:37.192][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:37.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.195][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.196][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:37.197][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:37.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.200][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.201][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:37.202][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:37.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.204][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.206][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:37.207][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:37.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.209][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.211][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:37.212][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:37.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.214][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.215][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:37.217][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:37.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.219][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.220][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:37.221][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:37.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.224][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.225][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:37.226][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:37.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.229][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.230][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:37.231][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:37.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.233][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.235][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:37.236][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:37.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.238][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.239][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:37.241][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:37.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.243][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.244][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:37.246][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:37.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.248][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.249][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:37.250][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:37.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.253][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.254][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:37.255][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:37.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.258][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.259][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:37.260][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:37.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.262][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.264][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:37.265][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:37.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.267][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.269][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:37.271][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:37.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.273][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.274][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:37.276][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:37.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.285][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.286][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:37.288][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:37.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.291][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.292][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:37.293][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:37.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.296][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.297][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:37.299][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:37.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.301][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.302][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:37.304][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:37.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.306][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.307][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:37.308][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:37.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.311][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.312][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:37.313][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:37.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.316][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.317][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:37.318][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:37.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.321][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.322][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:37.323][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:37.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.326][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.327][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:37.328][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:37.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.331][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.332][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:37.333][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:37.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.336][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.337][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:37.338][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:37.339][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:37.341][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:37.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.343][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.344][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:37.346][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:37.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.348][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.349][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:37.351][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:37.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.353][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.354][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:37.356][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:37.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.358][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.359][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:37.361][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:37.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.363][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.364][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:37.366][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:37.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.368][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.369][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:37.371][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:37.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.373][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.374][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:37.376][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:37.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.378][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.379][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:37.381][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:37.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.383][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.384][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:37.386][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:37.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.388][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.389][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:37.391][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:37.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.393][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.395][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:37.396][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:37.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.399][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.400][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:37.401][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:37.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.404][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.405][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:37.406][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:37.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.409][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.410][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:37.411][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:37.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.414][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.415][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:37.416][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:37.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.419][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.420][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-05-24 16:03:37.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:37.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:37.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:37.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:37.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:37.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:37.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:37.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:37.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:37.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:37.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:37.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:37.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:37.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:37.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:37.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:37.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:37.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:37.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.467][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:37.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:37.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:37.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:37.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.477][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:37.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:37.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.482][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:37.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:37.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.487][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:37.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:37.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:37.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:37.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:37.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:37.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.502][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:37.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:37.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:37.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:37.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.512][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:37.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:37.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.517][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:37.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:37.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.521][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:37.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:37.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:37.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:37.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:37.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:37.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:37.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:37.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:37.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:37.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.546][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:37.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:37.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:37.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:37.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.556][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:37.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:37.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.561][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:37.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:37.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.566][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:37.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:37.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:37.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:37.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:37.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:37.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:37.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:37.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:37.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:37.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:37.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:37.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:37.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:37.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.601][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:37.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:37.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.606][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:37.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:37.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.611][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:37.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:37.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.616][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:37.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:37.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:37.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:37.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.626][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:37.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:37.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.631][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:37.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:37.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.636][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:37.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:37.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.641][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:37.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:37.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.646][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:37.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:37.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.651][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:37.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:37.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.656][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:37.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:37.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.672][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [175625165, [3-chloro-6-(2,3-dihydrotetrazol-1-yl)-2-methyl-phenyl]methanol, [3-chloro-6-(2,3-dihydrotetrazol-1-yl)-2-methylphenyl]methanol, [3-chloro-6-(2,3-dihydrotetrazol-1-yl)-2-methylphenyl]methanol, [3-chloranyl-6-(2,3-dihydro-1,2,3,4-tetrazol-1-yl)-2-methyl-phenyl]methanol, ...].
biodb.DEBUG[2025-05-24 16:03:37.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:37.675][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:37.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:37.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:37.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:37.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:37.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:37.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:37.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:37.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:37.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:37.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:37.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:37.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:37.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:37.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:37.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:37.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:37.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:37.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:37.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:37.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:37.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:37.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:37.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:37.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.741][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:37.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:37.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:37.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:37.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:37.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:37.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.757][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:37.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:37.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.763][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:37.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:37.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:37.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:37.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:37.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:37.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:37.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:37.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:37.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:37.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.792][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:37.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:37.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.798][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:37.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:37.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:37.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:37.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:37.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:37.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:37.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:37.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:37.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:37.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.822][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:37.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:37.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.827][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:37.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:37.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.832][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:37.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:37.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.837][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:37.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:37.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.842][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:37.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:37.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.846][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:37.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:37.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.851][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:37.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:37.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.856][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:37.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:37.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.861][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:37.862][private$selectFields]
biodb.TRACE[2025-05-24 16:03:37.863][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:37.864][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:37.866][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:37.867][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:37.868][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:37.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.870][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.872][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:37.873][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:37.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.875][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.876][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:37.878][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:37.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.880][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.881][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:37.882][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:37.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.885][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.886][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:37.887][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:37.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.890][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.891][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:37.892][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:37.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.894][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.895][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:37.897][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:37.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.899][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.900][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:37.901][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:37.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.904][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.905][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:37.906][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:37.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.908][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.910][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:37.911][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:37.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.913][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.914][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:37.916][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:37.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.918][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.919][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:37.920][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:37.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.923][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.924][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:37.925][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:37.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.927][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.929][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:37.930][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:37.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.932][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.933][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:37.935][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:37.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.937][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.938][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:37.939][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:37.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.942][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.943][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:37.944][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:37.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.946][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.948][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:37.949][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:37.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.951][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.952][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:37.954][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:37.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.956][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.957][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:37.959][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:37.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.961][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.962][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:37.963][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:37.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.966][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.967][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:37.968][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:37.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.971][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.972][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:37.973][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:37.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.975][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.977][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:37.978][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:37.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.980][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.981][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:37.983][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:37.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.985][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.986][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:37.988][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:37.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.990][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.991][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:37.992][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:37.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:37.995][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:37.996][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:37.997][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:37.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.000][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.001][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:38.002][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:38.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.004][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.006][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:38.007][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:38.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.009][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.011][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:38.012][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:38.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.014][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.015][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:38.017][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:38.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.019][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.020][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:38.021][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:38.023][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:38.024][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:38.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.026][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.027][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:38.029][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:38.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.031][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.032][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:38.034][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:38.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.036][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.037][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:38.038][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:38.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.041][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.042][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:38.043][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:38.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.046][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.047][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:38.048][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:38.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.050][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.052][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:38.053][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:38.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.055][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.056][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:38.058][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:38.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.060][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.061][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:38.062][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:38.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.065][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.066][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:38.068][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:38.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.071][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.072][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:38.073][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:38.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.076][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.077][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:38.078][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:38.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.081][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.082][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:38.083][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:38.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.086][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.087][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:38.088][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:38.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.090][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.092][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:38.093][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:38.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.095][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.097][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:38.098][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:38.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.100][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.108][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-05-24 16:03:38.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:38.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:38.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:38.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:38.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:38.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:38.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.126][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:38.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:38.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:38.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:38.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.137][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:38.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:38.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.142][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:38.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:38.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:38.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:38.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.153][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:38.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:38.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:38.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:38.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.163][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:38.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:38.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:38.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:38.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:38.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:38.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:38.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:38.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.184][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:38.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:38.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:38.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:38.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:38.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:38.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:38.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:38.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.204][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:38.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:38.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.209][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:38.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:38.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.214][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:38.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:38.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:38.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:38.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:38.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:38.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:38.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:38.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.234][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:38.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:38.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:38.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:38.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:38.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:38.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.249][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:38.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:38.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.254][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:38.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:38.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.259][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:38.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:38.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:38.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:38.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:38.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:38.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:38.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:38.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:38.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:38.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:38.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:38.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:38.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:38.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.295][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:38.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:38.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.299][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:38.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:38.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.304][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:38.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:38.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:38.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:38.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.314][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:38.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:38.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:38.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:38.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.324][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:38.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:38.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.329][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:38.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:38.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.334][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:38.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:38.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.339][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:38.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:38.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.344][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:38.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:38.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.349][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:38.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:38.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.365][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [175623244, 4-chloro-3-ethyl-3-hydroxy-5-methyl-1H-pyrrolo[2,3-b]pyridin-2-one, 4-chloro-3-ethyl-3-hydroxy-5-methyl-1H-pyrrolo[2,3-b]pyridin-2-one, 4-chloro-3-ethyl-3-hydroxy-5-methyl-1H-pyrrolo[2,3-b]pyridin-2-one, 4-chloranyl-3-ethyl-5-methyl-3-oxidanyl-1H-pyrrolo[2,3-b]pyridin-2-one, ...].
biodb.DEBUG[2025-05-24 16:03:38.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:38.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:38.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:38.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:38.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:38.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:38.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:38.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:38.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:38.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:38.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:38.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:38.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:38.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.395][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:38.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:38.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.399][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:38.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:38.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.404][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:38.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:38.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:38.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:38.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.414][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:38.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:38.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.418][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:38.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:38.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:38.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:38.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:38.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:38.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:38.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:38.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.437][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:38.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:38.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.442][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:38.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:38.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:38.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:38.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:38.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:38.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:38.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:38.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:38.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:38.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.466][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:38.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:38.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.471][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:38.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:38.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:38.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:38.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:38.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:38.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:38.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:38.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:38.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:38.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.495][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:38.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:38.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.500][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:38.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:38.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:38.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:38.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:38.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:38.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.521][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:38.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:38.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.526][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:38.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:38.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.531][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:38.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:38.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.536][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:38.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:38.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.540][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:38.542][private$selectFields]
biodb.TRACE[2025-05-24 16:03:38.543][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:38.544][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:38.545][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:38.546][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:38.548][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:38.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.550][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.551][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:38.552][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:38.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.555][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.556][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:38.557][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:38.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.559][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.560][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:38.562][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:38.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.564][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.565][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:38.566][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:38.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.569][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.570][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:38.571][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:38.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.574][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.575][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:38.576][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:38.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.578][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.579][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:38.581][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:38.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.583][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.584][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:38.585][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:38.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.588][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.589][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:38.590][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:38.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.592][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.594][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:38.595][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:38.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.598][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.599][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:38.600][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:38.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.603][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.604][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:38.605][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:38.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.608][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.609][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:38.610][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:38.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.612][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.614][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:38.615][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:38.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.617][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.618][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:38.620][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:38.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.622][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.623][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:38.625][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:38.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.627][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.628][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:38.630][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:38.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.632][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.633][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:38.635][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:38.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.637][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.638][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:38.639][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:38.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.642][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.643][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:38.644][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:38.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.647][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.648][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:38.649][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:38.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.652][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.653][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:38.654][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:38.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.656][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.658][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:38.659][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:38.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.661][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.663][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:38.664][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:38.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.666][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.667][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:38.669][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:38.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.671][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.672][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:38.674][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:38.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.676][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.677][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:38.678][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:38.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.681][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.682][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:38.683][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:38.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.686][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.687][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:38.688][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:38.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.691][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.692][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:38.693][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:38.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.696][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.697][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:38.698][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:38.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.701][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.702][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:38.703][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:38.704][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:38.706][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:38.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.708][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.709][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:38.711][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:38.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.713][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.714][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:38.715][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:38.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.718][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.719][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:38.720][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:38.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.723][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.724][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:38.725][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:38.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.728][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.729][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:38.730][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:38.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.733][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.734][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:38.735][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:38.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.737][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.739][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:38.740][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:38.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.742][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.743][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:38.745][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:38.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.747][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.748][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:38.750][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:38.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.752][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.753][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:38.755][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:38.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.757][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.758][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:38.760][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:38.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.762][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.763][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:38.764][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:38.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.767][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.768][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:38.769][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:38.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.772][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.773][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:38.774][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:38.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.777][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.778][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:38.779][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:38.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.781][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.783][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-05-24 16:03:38.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:38.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:38.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:38.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:38.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:38.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:38.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:38.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:38.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:38.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:38.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:38.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:38.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.815][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:38.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:38.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:38.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:38.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:38.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:38.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:38.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:38.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:38.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:38.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:38.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:38.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.846][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:38.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:38.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:38.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:38.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.856][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:38.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:38.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:38.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:38.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:38.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:38.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:38.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:38.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.876][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:38.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:38.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.881][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:38.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:38.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.886][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:38.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:38.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.891][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:38.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:38.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:38.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:38.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:38.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:38.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:38.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:38.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.911][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:38.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:38.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:38.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:38.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.928][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:38.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:38.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.934][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:38.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:38.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.938][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:38.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:38.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:38.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:38.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:38.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:38.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:38.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:38.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:38.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:38.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:38.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:38.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:38.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:38.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.974][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:38.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:38.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.979][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:38.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:38.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.984][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:38.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:38.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:38.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:38.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:38.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:38.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:38.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:38.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:39.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:39.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.004][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:39.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:39.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.009][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:39.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:39.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.014][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:39.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:39.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.019][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:39.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:39.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.024][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:39.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:39.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.029][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:39.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:39.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.046][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [175621446, 2-(6-methylsulfanyl-3-pyridyl)benzonitrile, 2-[6-(methylthio)-3-pyridinyl]benzonitrile, 2-(6-methylsulfanylpyridin-3-yl)benzonitrile, 2-(6-methylsulfanylpyridin-3-yl)benzenecarbonitrile, ...].
biodb.DEBUG[2025-05-24 16:03:39.047][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:39.049][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:39.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:39.061][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:39.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:39.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:39.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:39.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:39.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:39.081][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:39.085][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:39.086][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-05-24 16:03:39.088][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:39.090][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-05-24 16:03:39.092][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:39.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:39.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:39.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:39.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:39.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:39.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:39.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:39.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:39.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:39.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:39.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:39.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:39.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:39.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.122][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:39.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:39.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:39.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:39.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:39.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:39.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.137][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:39.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:39.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.142][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:39.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:39.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:39.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:39.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:39.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:39.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:39.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:39.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:39.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:39.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.167][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:39.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:39.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.172][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:39.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:39.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.177][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:39.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:39.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:39.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:39.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.187][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:39.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:39.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:39.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:39.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.197][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:39.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:39.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.202][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:39.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:39.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:39.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:39.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:39.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:39.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:39.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:39.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:39.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:39.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.226][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:39.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:39.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.231][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:39.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:39.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:39.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:39.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:39.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:39.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.246][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:39.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:39.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.251][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:39.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:39.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.256][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:39.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:39.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.261][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:39.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:39.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.266][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:39.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:39.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.271][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:39.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:39.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.276][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:39.277][private$selectFields]
biodb.TRACE[2025-05-24 16:03:39.278][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:39.280][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:39.281][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:39.282][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:39.283][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:39.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.286][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.287][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:39.288][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:39.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.291][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.292][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:39.293][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:39.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.296][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.297][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:39.298][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:39.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.301][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.302][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:39.303][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:39.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.306][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.307][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:39.308][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:39.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.311][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.312][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:39.313][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:39.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.316][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.317][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:39.318][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:39.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.321][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.322][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:39.323][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:39.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.326][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.327][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:39.335][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:39.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.338][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.340][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:39.341][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:39.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.344][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.345][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:39.346][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:39.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.349][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.350][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:39.351][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:39.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.354][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.355][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:39.356][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:39.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.359][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.360][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:39.361][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:39.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.364][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.365][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:39.366][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:39.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.369][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.370][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:39.371][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:39.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.374][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.375][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:39.376][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:39.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.379][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.380][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:39.381][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:39.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.384][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.385][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:39.387][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:39.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.389][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.390][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:39.392][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:39.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.394][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.395][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:39.397][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:39.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.399][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.400][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:39.402][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:39.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.404][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.406][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:39.407][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:39.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.409][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.411][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:39.412][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:39.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.414][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.416][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:39.417][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:39.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.419][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.421][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:39.422][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:39.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.424][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.426][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:39.427][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:39.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.429][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.431][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:39.432][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:39.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.434][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.436][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:39.437][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:39.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.439][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.440][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:39.442][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:39.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.444][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.445][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:39.447][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:39.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.449][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.450][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:39.452][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:39.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.454][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.455][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:39.457][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:39.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.459][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.460][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:39.462][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:39.463][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:39.464][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:39.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.467][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.468][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:39.469][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:39.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.472][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.473][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:39.474][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:39.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.477][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.478][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:39.479][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:39.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.481][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.483][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:39.484][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:39.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.486][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.487][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:39.489][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:39.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.491][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.492][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:39.493][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:39.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.496][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.497][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:39.498][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:39.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.501][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.502][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:39.503][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:39.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.505][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.507][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:39.508][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:39.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.510][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.511][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:39.513][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:39.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.515][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.516][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:39.517][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:39.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.520][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.521][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:39.522][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:39.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.524][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.526][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:39.527][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:39.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.529][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.530][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:39.532][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:39.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.534][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.535][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:39.536][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:39.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.539][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.540][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-05-24 16:03:39.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:39.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:39.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:39.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:39.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:39.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:39.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:39.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:39.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.561][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:39.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:39.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.566][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:39.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:39.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:39.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:39.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.576][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:39.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:39.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:39.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:39.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:39.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:39.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:39.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:39.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:39.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:39.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:39.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:39.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:39.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:39.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.610][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:39.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:39.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:39.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:39.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:39.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:39.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:39.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:39.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.630][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:39.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:39.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.635][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:39.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:39.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.640][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:39.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:39.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:39.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:39.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:39.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:39.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.655][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:39.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:39.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:39.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:39.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.665][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:39.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:39.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:39.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:39.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.675][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:39.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:39.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.680][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:39.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:39.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.685][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:39.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:39.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:39.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:39.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:39.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:39.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:39.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:39.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:39.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:39.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:39.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:39.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:39.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:39.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.719][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:39.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:39.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.724][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:39.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:39.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.729][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:39.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:39.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.734][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:39.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:39.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.747][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:39.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:39.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.753][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:39.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:39.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.758][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:39.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:39.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.763][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:39.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:39.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.768][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:39.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:39.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.773][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:39.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:39.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.778][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:39.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:39.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.783][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:39.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:39.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.800][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [175639468, (1Z,3Z)-5-(4-methoxyphenyl)penta-1,3-diene-1,4-diamine, (1Z,3Z)-5-(4-methoxyphenyl)penta-1,3-diene-1,4-diamine, (1Z,3Z)-5-(4-methoxyphenyl)penta-1,3-diene-1,4-diamine, (1Z,3Z)-5-(4-methoxyphenyl)penta-1,3-diene-1,4-diamine, ...].
biodb.DEBUG[2025-05-24 16:03:39.801][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:39.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:39.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:39.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:39.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:39.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:39.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:39.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:39.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:39.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:39.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:39.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:39.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:39.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:39.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:39.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:39.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:39.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.839][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:39.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:39.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:39.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:39.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:39.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:39.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:39.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:39.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:39.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:39.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:39.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:39.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:39.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:39.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.875][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:39.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:39.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.880][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:39.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:39.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:39.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:39.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.892][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:39.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:39.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:39.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:39.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.903][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:39.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:39.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.908][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:39.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:39.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.913][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:39.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:39.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:39.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:39.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:39.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:39.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:39.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:39.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:39.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:39.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.938][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:39.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:39.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.943][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:39.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:39.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.948][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:39.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:39.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.954][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:39.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:39.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.959][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:39.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:39.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.964][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:39.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:39.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.969][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:39.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:39.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.974][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:39.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:39.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.978][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:39.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:39.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.983][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:39.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:39.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.988][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:39.989][private$selectFields]
biodb.TRACE[2025-05-24 16:03:39.990][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:39.992][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:39.993][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:39.994][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:39.995][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:39.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:39.998][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:39.999][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:40.000][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:40.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.002][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.004][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:40.005][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:40.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.007][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.008][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:40.010][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:40.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.012][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.013][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:40.014][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:40.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.017][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.018][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:40.019][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:40.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.022][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.023][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:40.024][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:40.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.026][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.028][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:40.029][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:40.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.031][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.032][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:40.034][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:40.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.036][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.037][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:40.038][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:40.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.041][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.042][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:40.043][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:40.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.046][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.047][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:40.048][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:40.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.050][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.052][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:40.053][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:40.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.055][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.056][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:40.058][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:40.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.060][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.061][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:40.062][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:40.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.065][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.066][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:40.067][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:40.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.070][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.071][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:40.072][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:40.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.074][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.076][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:40.077][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:40.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.079][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.080][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:40.082][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:40.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.084][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.085][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:40.087][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:40.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.089][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.090][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:40.091][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:40.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.094][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.095][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:40.096][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:40.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.098][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.100][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:40.101][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:40.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.103][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.104][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:40.106][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:40.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.108][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.109][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:40.111][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:40.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.113][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.114][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:40.115][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:40.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.118][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.119][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:40.120][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:40.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.122][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.124][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:40.125][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:40.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.127][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.128][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:40.130][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:40.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.132][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.133][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:40.135][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:40.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.137][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.138][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:40.139][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:40.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.142][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.143][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:40.151][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:40.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.154][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.155][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:40.157][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:40.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.159][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.161][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:40.162][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:40.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.164][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.165][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:40.167][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:40.168][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:40.169][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:40.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.171][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.173][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:40.174][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:40.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.176][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.178][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:40.179][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:40.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.181][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.182][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:40.184][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:40.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.186][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.187][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:40.189][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:40.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.191][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.192][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:40.193][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:40.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.196][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.197][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:40.198][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:40.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.201][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.202][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:40.203][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:40.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.205][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.207][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:40.208][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:40.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.210][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.211][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:40.213][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:40.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.215][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.216][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:40.218][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:40.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.220][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.221][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:40.223][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:40.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.225][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.226][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:40.228][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:40.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.230][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.231][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:40.232][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:40.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.235][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.236][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:40.237][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:40.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.240][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.241][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:40.242][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:40.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.245][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.246][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-05-24 16:03:40.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:40.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:40.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:40.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:40.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:40.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:40.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.262][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:40.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:40.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.267][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:40.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:40.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:40.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:40.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:40.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:40.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.282][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:40.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:40.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.287][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:40.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:40.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:40.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:40.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:40.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:40.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:40.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:40.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:40.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:40.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.313][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:40.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:40.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:40.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:40.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:40.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:40.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:40.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:40.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:40.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:40.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.338][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:40.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:40.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.343][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:40.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:40.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.348][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:40.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:40.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:40.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:40.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:40.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:40.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:40.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:40.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.369][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:40.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:40.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.374][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:40.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:40.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:40.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:40.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.384][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:40.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:40.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.388][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:40.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:40.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.393][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:40.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:40.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:40.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:40.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:40.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:40.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:40.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:40.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:40.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:40.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:40.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:40.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:40.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:40.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.428][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:40.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:40.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.433][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:40.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:40.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.438][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:40.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:40.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.443][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:40.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:40.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.448][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:40.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:40.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:40.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:40.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.458][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:40.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:40.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.463][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:40.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:40.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.468][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:40.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:40.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.473][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:40.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:40.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.478][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:40.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:40.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.483][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:40.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:40.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.500][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [175636749, (2S)-5'-methoxy-2,3-dimethyl-spiro[aziridin-1-ium-1,2'-benzotriazol-2-ium], (2S)-5'-methoxy-2,3-dimethylspiro[aziridin-1-ium-1,2'-benzotriazol-2-ium], (2S)-5'-methoxy-2,3-dimethylspiro[aziridin-1-ium-1,2'-benzotriazol-2-ium], (2S)-5'-methoxy-2,3-dimethyl-spiro[aziridin-1-ium-1,2'-benzotriazol-2-ium], ...].
biodb.DEBUG[2025-05-24 16:03:40.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:40.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:40.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:40.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:40.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:40.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:40.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:40.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:40.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:40.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:40.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:40.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:40.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:40.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.530][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:40.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:40.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:40.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:40.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:40.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:40.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:40.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:40.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.550][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:40.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:40.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:40.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:40.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.568][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:40.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:40.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.573][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:40.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:40.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:40.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:40.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.583][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:40.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:40.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.588][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:40.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:40.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:40.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:40.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.598][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:40.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:40.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:40.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:40.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:40.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:40.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.613][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:40.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:40.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.618][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:40.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:40.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:40.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:40.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:40.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:40.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:40.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:40.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:40.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:40.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.644][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:40.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:40.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.649][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:40.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:40.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.654][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:40.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:40.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.659][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:40.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:40.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.664][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:40.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:40.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.669][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:40.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:40.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.675][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:40.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:40.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.680][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:40.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:40.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.685][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:40.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:40.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.690][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:40.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:40.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.695][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:40.696][private$selectFields]
biodb.TRACE[2025-05-24 16:03:40.697][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:40.699][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:40.700][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:40.701][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:40.702][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:40.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.705][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.706][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:40.707][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:40.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.710][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.711][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:40.712][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:40.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.715][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.716][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:40.717][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:40.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.720][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.721][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:40.722][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:40.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.725][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.726][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:40.727][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:40.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.730][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.731][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:40.732][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:40.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.735][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.736][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:40.737][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:40.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.740][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.741][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:40.742][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:40.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.745][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.746][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:40.747][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:40.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.750][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.751][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:40.752][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:40.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.755][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.756][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:40.757][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:40.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.760][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.761][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:40.762][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:40.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.764][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.766][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:40.767][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:40.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.769][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.771][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:40.772][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:40.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.774][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.776][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:40.777][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:40.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.779][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.781][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:40.782][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:40.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.784][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.786][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:40.787][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:40.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.789][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.790][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:40.792][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:40.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.794][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.795][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:40.797][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:40.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.799][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.800][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:40.802][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:40.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.804][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.805][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:40.807][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:40.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.809][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.810][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:40.812][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:40.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.814][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.815][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:40.817][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:40.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.819][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.820][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:40.822][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:40.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.824][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.825][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:40.827][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:40.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.829][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.830][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:40.832][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:40.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.834][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.835][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:40.837][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:40.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.839][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.840][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:40.842][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:40.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.844][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.845][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:40.847][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:40.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.849][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.851][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:40.852][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:40.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.854][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.856][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:40.857][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:40.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.859][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.861][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:40.862][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:40.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.864][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.866][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:40.867][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:40.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.869][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.871][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:40.872][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:40.873][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:40.875][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:40.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.877][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.878][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:40.879][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:40.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.882][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.883][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:40.884][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:40.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.887][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.888][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:40.889][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:40.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.891][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.893][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:40.894][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:40.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.896][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.898][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:40.899][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:40.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.901][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.902][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:40.904][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:40.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.906][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.907][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:40.909][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:40.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.911][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.912][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:40.914][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:40.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.916][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.917][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:40.919][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:40.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.921][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.922][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:40.924][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:40.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.926][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.927][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:40.929][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:40.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.931][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.932][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:40.934][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:40.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.936][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.937][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:40.939][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:40.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.941][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.942][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:40.944][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:40.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.946][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.947][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:40.949][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:40.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.951][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.953][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-05-24 16:03:40.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:40.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:40.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:40.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:40.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:40.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:40.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:40.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:40.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:40.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:40.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:40.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:40.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:40.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:40.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:40.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:40.997][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:40.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:41.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:41.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:41.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:41.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:41.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:41.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:41.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:41.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:41.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:41.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:41.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.028][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:41.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:41.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:41.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:41.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.038][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:41.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:41.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:41.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:41.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:41.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:41.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.053][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:41.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:41.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.058][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:41.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:41.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.063][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:41.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:41.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:41.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:41.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:41.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:41.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:41.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:41.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:41.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:41.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:41.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:41.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:41.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:41.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.098][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:41.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:41.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.103][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:41.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:41.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.108][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:41.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:41.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:41.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:41.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:41.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:41.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:41.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:41.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:41.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:41.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:41.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:41.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:41.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:41.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.144][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:41.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:41.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.149][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:41.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:41.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.154][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:41.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:41.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.159][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:41.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:41.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:41.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:41.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.169][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:41.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:41.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.174][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:41.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:41.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.179][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:41.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:41.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.184][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:41.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:41.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.189][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:41.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:41.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.194][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:41.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:41.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.199][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:41.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:41.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.216][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [175636537, 6,6-difluoro-1-(isopropoxymethyl)-2-methyl-bicyclo[3.1.0]hexane, 6,6-difluoro-2-methyl-1-(propan-2-yloxymethyl)bicyclo[3.1.0]hexane, 6,6-difluoro-2-methyl-1-(propan-2-yloxymethyl)bicyclo[3.1.0]hexane, 6,6-bis(fluoranyl)-2-methyl-1-(propan-2-yloxymethyl)bicyclo[3.1.0]hexane, ...].
biodb.DEBUG[2025-05-24 16:03:41.217][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:41.218][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-05-24 16:03:41.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:41.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:41.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:41.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:41.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:41.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:41.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:41.243][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-05-24 16:03:41.247][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-05-24 16:03:41.249][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-05-24 16:03:41.250][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:41.252][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-05-24 16:03:41.254][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-05-24 16:03:41.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:41.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:41.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:41.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:41.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:41.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:41.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:41.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:41.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:41.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:41.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:41.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:41.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:41.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:41.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:41.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:41.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:41.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:41.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:41.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:41.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:41.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:41.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:41.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:41.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:41.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:41.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:41.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.319][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:41.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:41.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.324][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:41.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:41.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.328][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:41.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:41.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.333][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:41.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:41.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:41.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:41.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.343][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:41.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:41.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:41.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:41.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:41.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:41.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.358][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:41.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:41.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.363][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:41.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:41.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:41.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:41.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:41.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:41.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:41.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:41.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:41.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:41.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.397][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:41.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:41.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.402][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:41.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:41.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.407][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:41.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:41.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.411][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:41.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:41.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.416][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:41.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:41.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.421][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:41.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:41.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.426][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:41.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:41.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.431][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:41.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:41.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.436][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:41.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:41.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.441][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:41.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:41.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.446][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:41.447][private$selectFields]
biodb.TRACE[2025-05-24 16:03:41.448][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:41.450][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:41.451][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:41.452][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:41.453][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:41.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.456][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.457][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:41.458][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:41.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.461][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.462][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:41.463][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:41.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.466][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.467][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:41.468][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:41.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.470][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.472][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:41.473][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:41.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.475][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.477][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:41.478][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:41.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.480][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.481][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:41.483][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:41.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.485][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.487][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:41.488][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:41.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.490][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.492][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:41.493][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:41.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.495][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.496][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:41.498][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:41.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.500][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.501][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:41.503][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:41.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.505][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.506][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:41.507][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:41.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.510][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.511][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:41.512][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:41.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.515][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.516][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:41.517][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:41.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.520][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.521][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:41.522][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:41.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.524][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.526][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:41.527][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:41.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.529][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.531][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:41.532][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:41.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.534][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.535][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:41.537][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:41.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.539][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.540][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:41.542][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:41.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.544][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.545][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:41.547][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:41.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.549][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.550][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:41.552][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:41.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.554][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.555][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:41.557][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:41.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.559][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.560][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:41.561][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:41.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.564][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.565][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:41.566][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:41.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.569][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.570][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:41.571][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:41.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.573][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.575][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:41.576][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:41.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.578][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.580][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:41.581][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:41.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.583][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.584][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:41.586][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:41.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.588][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.589][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:41.591][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:41.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.593][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.594][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:41.595][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:41.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.598][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.599][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:41.600][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:41.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.603][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.604][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:41.605][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:41.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.607][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.609][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:41.610][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:41.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.612][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.613][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:41.615][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:41.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.617][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.618][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:41.620][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:41.621][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:41.622][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:41.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.624][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.626][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:41.627][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:41.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.629][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.630][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:41.632][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:41.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.634][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.635][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:41.637][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:41.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.639][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.640][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:41.641][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:41.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.644][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.645][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:41.646][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:41.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.649][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.650][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:41.651][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:41.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.653][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.655][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:41.656][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:41.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.658][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.659][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:41.661][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:41.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.663][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.664][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:41.666][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:41.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.668][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.669][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:41.670][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:41.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.673][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.674][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:41.675][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:41.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.678][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.679][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:41.680][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:41.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.683][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.684][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:41.685][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:41.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.687][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.689][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:41.690][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:41.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.692][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.693][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:41.695][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:41.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.697][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.699][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-05-24 16:03:41.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:41.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:41.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:41.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:41.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:41.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:41.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:41.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:41.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:41.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:41.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:41.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:41.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:41.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:41.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.735][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:41.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:41.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.740][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:41.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:41.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:41.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:41.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.750][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:41.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:41.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:41.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:41.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:41.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:41.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.765][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:41.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:41.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:41.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:41.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:41.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:41.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.781][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:41.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:41.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:41.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:41.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.799][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:41.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:41.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.804][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:41.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:41.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.809][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:41.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:41.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:41.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:41.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:41.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:41.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:41.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:41.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.830][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:41.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:41.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:41.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:41.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:41.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:41.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.845][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:41.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:41.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.850][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:41.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:41.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.855][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:41.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:41.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:41.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:41.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:41.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:41.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:41.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:41.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:41.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:41.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:41.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:41.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:41.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:41.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.890][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:41.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:41.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.894][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:41.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:41.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.899][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:41.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:41.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.904][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:41.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:41.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.909][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:41.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:41.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.914][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:41.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:41.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.919][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:41.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:41.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.924][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:41.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:41.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.929][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:41.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:41.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.934][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:41.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:41.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.939][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:41.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:41.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.944][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:41.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:41.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.961][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [175625165, [3-chloro-6-(2,3-dihydrotetrazol-1-yl)-2-methyl-phenyl]methanol, [3-chloro-6-(2,3-dihydrotetrazol-1-yl)-2-methylphenyl]methanol, [3-chloro-6-(2,3-dihydrotetrazol-1-yl)-2-methylphenyl]methanol, [3-chloranyl-6-(2,3-dihydro-1,2,3,4-tetrazol-1-yl)-2-methyl-phenyl]methanol, ...].
biodb.DEBUG[2025-05-24 16:03:41.962][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:41.963][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:41.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:41.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:41.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:41.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:41.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:41.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:41.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:41.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:41.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:41.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:41.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:41.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:41.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:41.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:41.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:41.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:41.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:41.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.000][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:42.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:42.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:42.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:42.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.010][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:42.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:42.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.015][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:42.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:42.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:42.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:42.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:42.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:42.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:42.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:42.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.035][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:42.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:42.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.040][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:42.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:42.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:42.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:42.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:42.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:42.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:42.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:42.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:42.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:42.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.065][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:42.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:42.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.070][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:42.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:42.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:42.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:42.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:42.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:42.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:42.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:42.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:42.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:42.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.094][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:42.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:42.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.099][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:42.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:42.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.104][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:42.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:42.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.109][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:42.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:42.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.114][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:42.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:42.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.119][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:42.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:42.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.123][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:42.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:42.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.128][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:42.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:42.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.133][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:42.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:42.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.138][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:42.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:42.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.143][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:42.144][private$selectFields]
biodb.TRACE[2025-05-24 16:03:42.146][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:42.147][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:42.148][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:42.149][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:42.150][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:42.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.153][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.154][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:42.155][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:42.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.157][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.159][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:42.160][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:42.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.162][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.163][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:42.165][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:42.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.167][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.168][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:42.169][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:42.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.172][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.173][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:42.174][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:42.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.176][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.178][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:42.179][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:42.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.181][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.182][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:42.184][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:42.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.186][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.187][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:42.195][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:42.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.198][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.199][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:42.201][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:42.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.203][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.204][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:42.206][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:42.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.208][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.210][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:42.211][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:42.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.215][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.216][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:42.218][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:42.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.220][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.222][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:42.223][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:42.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.225][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.227][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:42.228][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:42.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.230][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.231][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:42.233][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:42.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.241][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.243][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:42.244][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:42.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.247][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.248][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:42.249][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:42.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.252][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.253][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:42.254][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:42.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.256][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.258][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:42.259][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:42.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.261][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.263][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:42.264][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:42.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.266][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.268][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:42.269][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:42.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.271][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.273][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:42.274][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:42.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.276][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.278][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:42.279][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:42.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.281][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.282][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:42.284][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:42.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.286][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.287][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:42.289][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:42.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.291][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.292][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:42.294][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:42.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.296][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.297][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:42.298][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:42.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.301][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.302][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:42.303][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:42.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.306][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.307][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:42.308][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:42.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.311][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.312][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:42.313][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:42.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.316][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.317][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:42.318][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:42.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.321][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.322][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:42.323][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:42.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.325][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.327][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:42.328][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:42.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.330][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.332][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:42.333][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:42.334][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:42.335][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:42.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.344][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.346][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:42.347][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:42.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.349][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.350][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:42.352][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:42.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.354][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.355][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:42.357][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:42.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.359][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.360][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:42.362][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:42.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.364][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.365][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:42.367][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:42.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.369][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.370][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:42.371][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:42.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.374][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.375][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:42.376][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:42.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.379][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.380][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:42.381][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:42.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.384][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.385][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:42.386][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:42.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.405][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.407][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:42.408][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:42.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.410][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.411][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:42.413][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:42.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.415][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.416][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:42.418][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:42.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.448][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.449][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:42.451][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:42.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.453][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.454][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:42.456][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:42.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.458][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.488][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:42.490][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:42.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.492][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.493][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-05-24 16:03:42.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:42.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:42.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:42.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:42.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:42.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:42.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:42.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:42.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:42.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:42.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:42.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:42.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:42.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:42.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:42.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:42.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:42.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:42.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:42.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:42.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.550][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:42.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:42.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.555][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:42.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:42.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:42.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:42.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.566][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:42.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:42.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:42.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:42.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.576][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:42.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:42.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:42.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:42.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:42.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:42.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.591][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:42.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:42.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.596][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:42.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:42.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.601][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:42.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:42.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:42.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:42.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:42.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:42.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:42.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:42.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.621][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:42.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:42.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:42.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:42.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:42.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:42.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.636][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:42.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:42.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.641][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:42.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:42.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.646][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:42.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:42.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:42.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:42.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:42.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:42.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:42.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:42.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:42.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:42.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:42.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:42.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:42.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:42.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.682][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:42.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:42.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.687][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:42.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:42.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.699][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:42.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:42.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.705][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:42.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:42.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:42.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:42.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:42.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:42.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.721][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:42.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:42.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.726][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:42.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:42.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.731][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:42.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:42.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.736][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:42.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:42.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.741][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:42.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:42.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.747][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:42.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:42.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.764][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [175623244, 4-chloro-3-ethyl-3-hydroxy-5-methyl-1H-pyrrolo[2,3-b]pyridin-2-one, 4-chloro-3-ethyl-3-hydroxy-5-methyl-1H-pyrrolo[2,3-b]pyridin-2-one, 4-chloro-3-ethyl-3-hydroxy-5-methyl-1H-pyrrolo[2,3-b]pyridin-2-one, 4-chloranyl-3-ethyl-5-methyl-3-oxidanyl-1H-pyrrolo[2,3-b]pyridin-2-one, ...].
biodb.DEBUG[2025-05-24 16:03:42.765][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:42.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:42.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:42.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:42.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:42.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:42.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:42.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:42.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:42.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:42.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:42.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:42.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:42.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:42.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:42.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:42.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:42.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:42.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:42.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:42.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:42.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:42.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:42.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:42.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:42.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:42.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:42.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:42.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:42.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:42.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:42.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.839][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:42.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:42.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.844][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:42.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:42.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:42.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:42.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:42.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:42.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:42.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:42.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.865][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:42.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:42.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.870][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:42.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:42.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.875][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:42.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:42.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:42.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:42.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:42.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:42.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:42.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:42.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:42.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:42.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.900][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:42.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:42.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.905][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:42.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:42.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.910][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:42.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:42.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.915][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:42.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:42.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.920][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:42.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:42.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.926][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:42.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:42.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.931][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:42.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:42.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.936][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:42.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:42.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.941][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:42.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:42.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.947][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:42.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:42.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.952][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:42.953][private$selectFields]
biodb.TRACE[2025-05-24 16:03:42.955][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-05-24 16:03:42.956][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-05-24 16:03:42.957][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:42.958][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:42.960][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:42.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.963][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.964][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:42.965][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:42.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.968][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.970][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:42.971][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:42.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.973][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.975][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:42.976][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:42.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.979][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.980][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:42.982][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:42.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.984][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.986][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:42.987][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:42.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.989][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.990][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:42.992][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:42.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.994][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:42.995][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:42.997][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:42.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:42.999][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.000][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:43.002][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:43.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.004][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.005][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:43.006][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:43.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.009][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.010][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:43.011][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:43.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.014][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.015][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:43.016][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:43.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.019][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.020][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:43.021][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:43.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.023][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.025][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:43.026][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:43.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.028][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.030][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:43.031][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:43.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.033][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.035][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:43.036][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:43.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.038][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.039][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:43.041][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:43.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.043][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.044][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:43.046][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:43.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.048][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.049][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:43.051][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:43.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.053][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.054][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:43.056][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:43.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.058][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.059][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:43.060][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:43.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.063][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.064][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:43.065][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:43.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.068][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.069][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:43.070][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:43.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.073][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.074][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:43.075][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:43.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.077][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.079][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:43.080][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:43.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.082][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.083][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:43.085][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:43.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.087][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.088][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:43.089][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:43.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.092][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.093][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:43.094][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:43.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.097][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.098][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:43.099][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:43.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.101][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.103][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:43.104][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:43.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.113][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.115][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:43.116][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:43.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.119][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.120][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:43.122][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:43.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.124][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.125][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:43.127][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:43.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.129][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.130][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-05-24 16:03:43.132][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-05-24 16:03:43.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.135][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.136][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:43.138][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-05-24 16:03:43.139][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:43.140][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:43.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.143][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.144][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:43.145][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:43.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.148][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.149][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:43.150][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:43.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.152][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.154][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:43.155][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:43.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.157][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.159][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:43.160][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:43.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.162][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.164][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:43.165][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:43.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.167][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.169][ef$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:43.170][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:43.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.173][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.174][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:43.175][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:43.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.178][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.179][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:43.180][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:43.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.183][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.184][ef$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:43.185][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:43.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.188][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.189][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:43.190][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:43.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.192][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.194][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:43.195][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:43.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.197][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.199][ef$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:43.200][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:43.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.202][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.204][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:43.205][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:43.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.207][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.209][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:43.210][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:43.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.212][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.214][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:43.215][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:43.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.217][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.219][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-05-24 16:03:43.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:43.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:43.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:43.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:43.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:43.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:43.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.235][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:43.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:43.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.240][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:43.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:43.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.245][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:43.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-05-24 16:03:43.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:43.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:43.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.255][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:43.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:43.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:43.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-05-24 16:03:43.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:43.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:43.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:43.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:43.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:43.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-05-24 16:03:43.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.281][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:43.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:43.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:43.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:43.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:43.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-05-24 16:03:43.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:43.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:43.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.301][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:43.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:43.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:43.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-05-24 16:03:43.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.311][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:43.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:43.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.316][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:43.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:43.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.321][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-05-24 16:03:43.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-05-24 16:03:43.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:43.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:43.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:43.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:43.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-05-24 16:03:43.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-05-24 16:03:43.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:43.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:43.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:43.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:43.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-05-24 16:03:43.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-05-24 16:03:43.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.356][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:43.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:43.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.361][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:43.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:43.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.366][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-05-24 16:03:43.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-05-24 16:03:43.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:43.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:43.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:43.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:43.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:43.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-05-24 16:03:43.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:43.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:43.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:43.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:43.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:43.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-05-24 16:03:43.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.401][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:43.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:43.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.406][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:43.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:43.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.411][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-05-24 16:03:43.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-05-24 16:03:43.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.416][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:43.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:43.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.421][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:43.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:43.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.426][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:43.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:43.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.431][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:43.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:43.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.437][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:43.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:43.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.442][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:43.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-05-24 16:03:43.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.447][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:43.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:43.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.452][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:43.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:43.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.457][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:43.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-05-24 16:03:43.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.474][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [175621446, 2-(6-methylsulfanyl-3-pyridyl)benzonitrile, 2-[6-(methylthio)-3-pyridinyl]benzonitrile, 2-(6-methylsulfanylpyridin-3-yl)benzonitrile, 2-(6-methylsulfanylpyridin-3-yl)benzenecarbonitrile, ...].
biodb.DEBUG[2025-05-24 16:03:43.475][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-05-24 16:03:43.477][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-05-24 16:03:43.485][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-05-24 16:03:43.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-05-24 16:03:43.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:43.490][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-05-24 16:03:43.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-05-24 16:03:43.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:43.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-05-24 16:03:43.499][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-05-24 16:03:43.500][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.comp from the request scheduler
biodb.INFO [2025-05-24 16:03:43.501][self$deleteConn] Connector "ncbi.pubchem.comp" deleted.
biodb.DEBUG[2025-05-24 16:03:43.503][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-05-24 16:03:43.504][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:43.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:43.506][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:43.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:43.508][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-05-24 16:03:43.514][biodb::testContext]
biodb.INFO [2025-05-24 16:03:43.522][biodb::testContext] ********************************************************************************
biodb.INFO [2025-05-24 16:03:43.523][biodb::testContext] Test context - Pubchem Subst long tests
biodb.INFO [2025-05-24 16:03:43.525][biodb::testContext] ********************************************************************************
biodb.INFO [2025-05-24 16:03:43.526][biodb::testContext]
biodb.INFO [2025-05-24 16:03:43.529][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-05-24 16:03:43.531][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-05-24 16:03:43.536][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-05-24 16:03:43.537][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-05-24 16:03:43.538][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-05-24 16:03:43.539][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.543][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-05-24 16:03:43.544][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-05-24 16:03:43.545][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.549][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-05-24 16:03:43.550][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-05-24 16:03:43.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.555][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-05-24 16:03:43.556][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-05-24 16:03:43.557][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-05-24 16:03:43.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.562][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-05-24 16:03:43.563][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-05-24 16:03:43.564][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-05-24 16:03:43.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.569][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-05-24 16:03:43.570][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-05-24 16:03:43.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.575][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-05-24 16:03:43.576][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-05-24 16:03:43.577][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-05-24 16:03:43.578][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.582][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-05-24 16:03:43.583][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-05-24 16:03:43.584][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.588][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-05-24 16:03:43.589][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-05-24 16:03:43.590][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-05-24 16:03:43.592][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.595][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-05-24 16:03:43.596][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-05-24 16:03:43.598][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-05-24 16:03:43.599][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-05-24 16:03:43.600][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-05-24 16:03:43.601][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-05-24 16:03:43.603][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.606][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-05-24 16:03:43.607][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-05-24 16:03:43.608][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.612][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-05-24 16:03:43.613][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-05-24 16:03:43.614][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.618][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-05-24 16:03:43.619][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-05-24 16:03:43.620][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.624][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-05-24 16:03:43.625][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-05-24 16:03:43.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.629][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-05-24 16:03:43.631][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-05-24 16:03:43.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.635][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-05-24 16:03:43.636][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-05-24 16:03:43.647][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-05-24 16:03:43.648][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.651][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-05-24 16:03:43.653][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-05-24 16:03:43.654][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-05-24 16:03:43.655][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.659][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-05-24 16:03:43.661][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-05-24 16:03:43.662][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-05-24 16:03:43.663][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:43.665][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-05-24 16:03:43.666][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:43.667][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-05-24 16:03:43.668][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-05-24 16:03:43.670][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-05-24 16:03:43.671][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-05-24 16:03:43.672][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-05-24 16:03:43.673][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:43.675][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-05-24 16:03:43.676][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-05-24 16:03:43.677][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:03:43.679][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:43.680][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-05-24 16:03:43.680][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-05-24 16:03:43.680][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-05-24 16:03:43.680][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-05-24 16:03:43.680][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-05-24 16:03:43.681][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-05-24 16:03:43.682][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:03:43.684][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:03:43.685][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-05-24 16:03:43.686][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:03:43.687][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:03:43.688][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-05-24 16:03:43.690][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:03:43.691][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-05-24 16:03:43.692][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-05-24 16:03:43.693][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-05-24 16:03:43.694][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:03:43.696][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-05-24 16:03:43.698][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-05-24 16:03:43.699][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-05-24 16:03:43.701][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:43.702][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-05-24 16:03:43.703][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:43.704][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-05-24 16:03:43.706][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-05-24 16:03:43.707][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-05-24 16:03:43.708][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-05-24 16:03:43.709][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-05-24 16:03:43.711][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:43.712][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-05-24 16:03:43.713][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-05-24 16:03:43.714][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:03:43.716][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:43.717][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-05-24 16:03:43.717][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-05-24 16:03:43.717][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-05-24 16:03:43.717][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-05-24 16:03:43.717][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-05-24 16:03:43.718][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-05-24 16:03:43.719][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:03:43.721][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:03:43.722][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-05-24 16:03:43.723][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:03:43.724][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:03:43.725][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-05-24 16:03:43.727][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:03:43.728][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-05-24 16:03:43.729][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-05-24 16:03:43.730][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-05-24 16:03:43.731][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:03:43.733][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-05-24 16:03:43.735][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:43.736][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-05-24 16:03:43.738][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:43.739][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-05-24 16:03:43.740][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:43.741][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-05-24 16:03:43.742][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-05-24 16:03:43.744][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-05-24 16:03:43.745][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-05-24 16:03:43.746][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-05-24 16:03:43.747][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-05-24 16:03:43.749][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-05-24 16:03:43.750][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-05-24 16:03:43.751][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:03:43.752][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:43.754][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:03:43.755][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-05-24 16:03:43.756][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:03:43.757][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:03:43.758][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-05-24 16:03:43.760][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:03:43.761][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:03:43.762][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-05-24 16:03:43.763][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:03:43.764][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-05-24 16:03:43.765][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-05-24 16:03:43.767][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-05-24 16:03:43.768][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:03:43.769][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-05-24 16:03:43.771][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:43.773][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-05-24 16:03:43.774][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:43.775][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-05-24 16:03:43.776][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:43.778][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-05-24 16:03:43.779][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-05-24 16:03:43.780][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-05-24 16:03:43.781][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-05-24 16:03:43.783][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-05-24 16:03:43.784][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-05-24 16:03:43.785][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-05-24 16:03:43.786][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-05-24 16:03:43.788][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:03:43.789][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:43.790][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:03:43.791][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-05-24 16:03:43.793][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:03:43.794][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:03:43.795][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-05-24 16:03:43.796][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:03:43.797][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:03:43.798][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-05-24 16:03:43.800][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:03:43.801][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-05-24 16:03:43.802][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-05-24 16:03:43.803][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-05-24 16:03:43.804][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:03:43.806][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-05-24 16:03:43.807][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.809][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:43.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:43.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.815][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:43.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:43.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:43.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:43.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.826][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:43.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:43.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.832][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:43.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:43.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:43.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:43.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.843][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:43.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:43.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.848][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:43.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:43.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.854][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:43.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:43.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.860][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:43.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:43.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.865][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:43.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:43.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.871][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:43.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:43.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:43.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:43.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.882][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:43.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:43.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:43.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:43.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.893][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:43.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:43.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.899][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:43.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:43.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:43.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:43.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:43.905][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-05-24 16:03:43.907][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-05-24 16:03:43.908][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-05-24 16:03:43.910][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-05-24 16:03:43.912][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-05-24 16:03:43.914][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-05-24 16:03:43.915][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-05-24 16:03:43.917][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-05-24 16:03:43.919][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-05-24 16:03:43.921][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-05-24 16:03:43.922][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-05-24 16:03:43.924][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-05-24 16:03:43.926][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-05-24 16:03:43.934][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-05-24 16:03:43.937][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-05-24 16:03:43.939][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-05-24 16:03:43.941][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-05-24 16:03:43.943][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-05-24 16:03:43.944][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-05-24 16:03:43.946][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-05-24 16:03:43.948][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-05-24 16:03:43.949][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-05-24 16:03:43.951][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-05-24 16:03:43.953][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-05-24 16:03:43.955][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-05-24 16:03:43.956][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-05-24 16:03:43.958][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-05-24 16:03:43.960][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-05-24 16:03:43.961][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-05-24 16:03:43.963][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-05-24 16:03:43.965][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-05-24 16:03:43.967][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-05-24 16:03:43.968][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-05-24 16:03:43.970][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-05-24 16:03:43.972][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-05-24 16:03:43.974][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-05-24 16:03:43.975][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-05-24 16:03:43.977][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-05-24 16:03:43.979][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-05-24 16:03:43.980][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-05-24 16:03:43.982][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-05-24 16:03:43.984][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-05-24 16:03:43.986][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-05-24 16:03:43.987][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-05-24 16:03:43.989][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-05-24 16:03:43.991][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-05-24 16:03:43.993][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-05-24 16:03:43.994][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-05-24 16:03:43.996][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-05-24 16:03:43.998][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-05-24 16:03:44.000][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-05-24 16:03:44.001][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-05-24 16:03:44.003][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-05-24 16:03:44.005][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-05-24 16:03:44.007][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-05-24 16:03:44.008][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-05-24 16:03:44.010][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-05-24 16:03:44.012][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-05-24 16:03:44.014][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-05-24 16:03:44.015][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-05-24 16:03:44.017][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-05-24 16:03:44.019][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-05-24 16:03:44.020][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-05-24 16:03:44.022][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-05-24 16:03:44.024][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-05-24 16:03:44.026][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-05-24 16:03:44.027][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-05-24 16:03:44.029][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-05-24 16:03:44.031][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-05-24 16:03:44.032][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-05-24 16:03:44.034][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-05-24 16:03:44.036][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-05-24 16:03:44.038][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-05-24 16:03:44.039][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-05-24 16:03:44.041][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-05-24 16:03:44.043][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-05-24 16:03:44.044][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-05-24 16:03:44.046][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-05-24 16:03:44.048][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-05-24 16:03:44.050][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-05-24 16:03:44.051][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-05-24 16:03:44.053][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-05-24 16:03:44.055][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-05-24 16:03:44.057][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-05-24 16:03:44.058][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-05-24 16:03:44.060][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-05-24 16:03:44.061][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:44.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:44.063][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:44.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:44.065][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:44.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:44.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:44.069][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:44.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:44.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:44.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:44.073][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:44.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:44.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:44.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:44.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:44.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:44.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:44.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:44.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:44.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:44.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:44.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:44.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:44.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:44.089][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:44.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:44.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:44.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:44.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:44.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:44.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:44.097][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:44.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:44.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:44.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:44.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:44.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:44.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:44.104][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:44.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:44.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:44.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:44.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:44.110][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:44.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:44.112][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:44.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:44.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:44.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:44.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:44.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:44.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:44.120][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:44.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:44.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:44.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:44.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:44.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:44.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:44.128][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:44.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:44.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:44.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:44.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:44.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:44.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:44.135][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:44.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:44.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:44.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:44.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:44.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:44.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:44.143][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:44.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:44.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:44.147][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:44.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:44.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:44.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:44.151][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:44.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:44.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:44.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:44.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:44.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:44.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:44.159][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:44.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:44.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:44.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:44.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:44.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:44.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:44.167][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:44.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:44.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:44.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:44.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:44.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:44.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:44.175][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:44.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:44.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:44.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:44.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:44.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:44.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:44.182][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:44.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:44.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:44.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:44.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:44.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:44.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:44.190][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-05-24 16:03:44.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:44.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:44.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:44.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:44.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:44.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-05-24 16:03:44.199][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2025-05-24 16:03:44.202][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2025-05-24 16:03:44.204][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:44.205][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2025-05-24 16:03:44.206][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:44.208][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-05-24 16:03:44.209][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:44.210][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-05-24 16:03:44.211][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:44.213][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-05-24 16:03:44.214][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2025-05-24 16:03:44.215][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-05-24 16:03:44.216][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:44.218][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2025-05-24 16:03:44.219][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-05-24 16:03:44.220][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2025-05-24 16:03:44.220][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2025-05-24 16:03:44.221][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-05-24 16:03:44.223][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:03:44.224][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-05-24 16:03:44.225][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:03:44.226][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:03:44.227][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-05-24 16:03:44.229][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:03:44.230][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:03:44.231][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-05-24 16:03:44.232][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-05-24 16:03:44.232][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2025-05-24 16:03:44.233][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-05-24 16:03:44.235][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-05-24 16:03:44.236][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:44.237][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:03:44.238][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2025-05-24 16:03:44.241][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:44.242][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2025-05-24 16:03:44.243][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:44.244][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-05-24 16:03:44.246][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:44.247][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-05-24 16:03:44.248][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:44.249][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-05-24 16:03:44.251][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-05-24 16:03:44.252][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-05-24 16:03:44.253][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:44.255][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2025-05-24 16:03:44.256][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-05-24 16:03:44.257][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2025-05-24 16:03:44.257][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2025-05-24 16:03:44.257][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2025-05-24 16:03:44.257][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2025-05-24 16:03:44.257][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2025-05-24 16:03:44.257][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2025-05-24 16:03:44.259][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-05-24 16:03:44.260][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-05-24 16:03:44.261][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-05-24 16:03:44.262][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:03:44.263][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:03:44.265][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-05-24 16:03:44.266][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:03:44.267][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:03:44.268][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-05-24 16:03:44.269][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-05-24 16:03:44.269][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-05-24 16:03:44.271][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-05-24 16:03:44.272][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-05-24 16:03:44.273][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:44.274][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:03:44.276][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2025-05-24 16:03:44.278][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-05-24 16:03:44.279][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2025-05-24 16:03:44.280][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:44.282][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-05-24 16:03:44.283][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:44.284][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-05-24 16:03:44.285][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:44.287][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-05-24 16:03:44.288][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-05-24 16:03:44.289][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-05-24 16:03:44.290][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:44.292][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2025-05-24 16:03:44.293][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-05-24 16:03:44.294][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-05-24 16:03:44.294][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:03:44.294][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:03:44.294][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:03:44.294][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:03:44.294][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:03:44.294][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:03:44.294][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:03:44.294][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:03:44.294][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:03:44.294][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2025-05-24 16:03:44.294][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:03:44.294][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:03:44.294][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-05-24 16:03:44.296][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-05-24 16:03:44.297][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-05-24 16:03:44.297][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-05-24 16:03:44.297][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-05-24 16:03:44.298][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-05-24 16:03:44.300][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:03:44.301][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:03:44.302][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-05-24 16:03:44.303][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:03:44.304][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:03:44.305][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-05-24 16:03:44.307][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-05-24 16:03:44.307][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-05-24 16:03:44.307][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-05-24 16:03:44.308][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-05-24 16:03:44.309][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-05-24 16:03:44.310][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:44.312][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-05-24 16:03:44.313][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2025-05-24 16:03:44.315][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:44.317][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2025-05-24 16:03:44.318][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:44.319][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-05-24 16:03:44.320][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:44.322][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-05-24 16:03:44.323][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:44.332][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-05-24 16:03:44.333][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-05-24 16:03:44.335][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-05-24 16:03:44.336][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:44.338][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2025-05-24 16:03:44.339][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-05-24 16:03:44.340][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2025-05-24 16:03:44.340][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-05-24 16:03:44.342][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-05-24 16:03:44.343][self$setPropertyValue]
biodb.DEBUG[2025-05-24 16:03:44.344][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-05-24 16:03:44.345][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:03:44.346][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:03:44.348][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-05-24 16:03:44.349][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-05-24 16:03:44.350][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-05-24 16:03:44.351][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-05-24 16:03:44.352][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-05-24 16:03:44.352][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-05-24 16:03:44.352][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-05-24 16:03:44.354][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-05-24 16:03:44.355][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-05-24 16:03:44.356][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-05-24 16:03:44.357][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-05-24 16:03:44.359][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2025-05-24 16:03:44.361][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-05-24 16:03:44.363][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-05-24 16:03:44.365][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2025-05-24 16:03:44.366][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-05-24 16:03:44.368][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2025-05-24 16:03:44.374][super$initialize] Initialize connector ncbi.pubchem.subst.
biodb.DEBUG[2025-05-24 16:03:44.376][super$initialize] Register connector ncbi.pubchem.subst with the request scheduler
biodb.DEBUG[2025-05-24 16:03:44.377][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.subst.
biodb.DEBUG[2025-05-24 16:03:44.379][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2025-05-24 16:03:44.380][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-05-24 16:03:44.382][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-05-24 16:03:44.383][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2025-05-24 16:03:44.385][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-05-24 16:03:44.386][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-05-24 16:03:44.388][rule$addConnector] Connector "ncbi.pubchem.subst" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-05-24 16:03:44.394][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.subst for database class ncbi.pubchem.subst .
biodb.INFO [2025-05-24 16:03:44.399][biodb::testThat]
biodb.INFO [2025-05-24 16:03:44.400][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-05-24 16:03:44.401][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:03:44.402][biodb::testThat]
biodb.TRACE[2025-05-24 16:03:44.405][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.subst-3-content.xml".
biodb.DEBUG[2025-05-24 16:03:44.407][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2025-05-24 16:03:44.410][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2025-05-24 16:03:44.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:44.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:44.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:44.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:44.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:44.423][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:44.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:44.427][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:44.429][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:44.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.431][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:44.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:44.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.438][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:44.439][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:44.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.441][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.443][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:44.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:44.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.448][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-05-24 16:03:44.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-05-24 16:03:44.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-05-24 16:03:44.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-05-24 16:03:44.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:44.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:44.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.463][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-05-24 16:03:44.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-05-24 16:03:44.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:44.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:44.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:44.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:44.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:44.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:44.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:44.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:44.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:44.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:44.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:44.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:44.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:44.498][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3.
biodb.TRACE[2025-05-24 16:03:44.500][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:03:44.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:03:44.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.505][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:03:44.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:03:44.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:03:44.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:03:44.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.515][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:03:44.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:03:44.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.520][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:03:44.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:03:44.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.525][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-05-24 16:03:44.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-05-24 16:03:44.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.530][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-05-24 16:03:44.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-05-24 16:03:44.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:44.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:44.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-05-24 16:03:44.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-05-24 16:03:44.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:44.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:44.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:44.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:44.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:44.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:44.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:44.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:44.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:44.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:44.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:44.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:44.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-05-24 16:03:44.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-05-24 16:03:44.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.593][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-05-24 16:03:44.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-05-24 16:03:44.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-05-24 16:03:44.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-05-24 16:03:44.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:44.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:44.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:44.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:44.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:44.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:44.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.625][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:44.627][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:44.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.629][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:44.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:44.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.645][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:44.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:44.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.650][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:44.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:44.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.655][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:44.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:44.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.660][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:44.661][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:44.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.664][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.665][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:44.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:44.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.680][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:44.682][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:44.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.684][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.690][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:44.692][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:44.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.694][ef$get] fields variable is a list.
biodb.INFO [2025-05-24 16:03:44.705][biodb::testThat]
biodb.INFO [2025-05-24 16:03:44.706][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-05-24 16:03:44.707][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:03:44.708][biodb::testThat]
biodb.DEBUG[2025-05-24 16:03:44.727][private$loadEntries] Creating entries from ids [1]: "3".
biodb.DEBUG[2025-05-24 16:03:44.730][conn$getEntryContent] Get PubChem Substance entry content(s) for 1 id(s)...
biodb.TRACE[2025-05-24 16:03:44.733][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3".
biodb.TRACE[2025-05-24 16:03:44.735][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-05-24 16:03:44.737][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.subst-e80afa72f6aa7425ca0c72f99f7b9d75/3.xml".
biodb.DEBUG[2025-05-24 16:03:44.739][conn$getEntryContent] 1 PubChem Substance entry content(s) loaded from cache.
biodb.DEBUG[2025-05-24 16:03:44.740][self$createEntryFromContent] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2025-05-24 16:03:44.750][self$createEntryFromContent] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2025-05-24 16:03:44.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-05-24 16:03:44.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:44.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:44.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:44.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:44.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:44.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-05-24 16:03:44.769][ef$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:44.770][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:44.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.773][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:44.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:44.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.780][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:44.781][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:44.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.783][ef$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.785][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:44.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-05-24 16:03:44.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.790][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-05-24 16:03:44.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-05-24 16:03:44.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-05-24 16:03:44.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-05-24 16:03:44.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:44.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:44.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-05-24 16:03:44.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-05-24 16:03:44.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:44.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:44.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:44.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:44.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:44.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:44.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:44.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:44.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:44.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:44.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-05-24 16:03:44.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-05-24 16:03:44.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-05-24 16:03:44.841][self$createEntryFromContent] Accession numbers: 3.
biodb.TRACE[2025-05-24 16:03:44.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-05-24 16:03:44.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-05-24 16:03:44.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-05-24 16:03:44.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-05-24 16:03:44.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-05-24 16:03:44.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-05-24 16:03:44.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-05-24 16:03:44.867][biodb::testThat]
biodb.INFO [2025-05-24 16:03:44.868][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-05-24 16:03:44.869][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:03:44.870][biodb::testThat]
biodb.INFO [2025-05-24 16:03:44.878][biodb::testThat]
biodb.INFO [2025-05-24 16:03:44.879][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-05-24 16:03:44.880][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:03:44.881][biodb::testThat]
biodb.WARN [2025-05-24 16:03:44.886][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2025-05-24 16:03:44.890][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2025-05-24 16:03:44.901][biodb::testThat]
biodb.INFO [2025-05-24 16:03:44.902][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-05-24 16:03:44.903][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:03:44.904][biodb::testThat]
biodb.TRACE[2025-05-24 16:03:44.917][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:03:44.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:03:44.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.922][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:03:44.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:03:44.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:03:44.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:03:44.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.932][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:03:44.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:03:44.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.937][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:03:44.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:03:44.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.942][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-05-24 16:03:44.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-05-24 16:03:44.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.947][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-05-24 16:03:44.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-05-24 16:03:44.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.953][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:03:44.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:03:44.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.958][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-05-24 16:03:44.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-05-24 16:03:44.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:03:44.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-05-24 16:03:44.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.968][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:03:44.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:03:44.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.973][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-05-24 16:03:44.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-05-24 16:03:44.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.978][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-05-24 16:03:44.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-05-24 16:03:44.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-05-24 16:03:44.983][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-05-24 16:03:44.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-05-24 16:03:44.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-05-24 16:03:44.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-05-24 16:03:44.994][biodb::testThat]
biodb.INFO [2025-05-24 16:03:44.996][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-05-24 16:03:44.997][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:03:44.998][biodb::testThat]
biodb.INFO [2025-05-24 16:03:45.008][biodb::testThat]
biodb.INFO [2025-05-24 16:03:45.009][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-05-24 16:03:45.010][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:03:45.011][biodb::testThat]
biodb.INFO [2025-05-24 16:03:45.022][biodb::testThat]
biodb.INFO [2025-05-24 16:03:45.023][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-05-24 16:03:45.025][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:03:45.026][biodb::testThat]
biodb.DEBUG[2025-05-24 16:03:45.030][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/substance/3".
biodb.DEBUG[2025-05-24 16:03:45.133][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/substance/3.
biodb.INFO [2025-05-24 16:03:45.218][biodb::testThat]
biodb.INFO [2025-05-24 16:03:45.220][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-05-24 16:03:45.221][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-05-24 16:03:45.222][biodb::testThat]
biodb.DEBUG[2025-05-24 16:03:45.282][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=3&t=l.
biodb.INFO [2025-05-24 16:03:45.380][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-05-24 16:03:45.382][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.subst from the request scheduler
biodb.INFO [2025-05-24 16:03:45.383][self$deleteConn] Connector "ncbi.pubchem.subst" deleted.
biodb.DEBUG[2025-05-24 16:03:45.384][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-05-24 16:03:45.385][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-05-24 16:03:45.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-05-24 16:03:45.387][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-05-24 16:03:45.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-05-24 16:03:45.390][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-05-24 16:03:45.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1030 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1030 ]
> 
> proc.time()
   user  system elapsed 
 55.697   2.209  90.499

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.12.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck’
* using R version 4.5.0 RC (2025-04-04 r88126)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbNcbi/DESCRIPTION’ ... OK
* this is package ‘biodbNcbi’ version ‘1.12.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbNcbi’ can be installed ... OK
* checking installed package size ... INFO
  installed size is  8.2Mb
  sub-directories of 1Mb or more:
    testref   7.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  NcbiCcdsConn.Rd: BiodbFactory, BiodbConn
  NcbiCcdsEntry.Rd: BiodbHtmlEntry
  NcbiEntrezConn.Rd: BiodbConn
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... WARNING
'library' or 'require' call not declared from: ‘biodbNci’
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/00check.log’
for details.

Installation output

biodbNcbi.Rcheck/00install.out

* installing *source* package ‘biodbNcbi’ ...
** this is package ‘biodbNcbi’ version ‘1.12.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbNcbi)