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This page was generated on 2025-12-04 12:03 -0500 (Thu, 04 Dec 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4878
merida1macOS 12.7.6 Montereyx86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4624
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4669
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2282/2361HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
twoddpcr 1.34.0  (landing page)
Anthony Chiu
Snapshot Date: 2025-12-01 13:45 -0500 (Mon, 01 Dec 2025)
git_url: https://git.bioconductor.org/packages/twoddpcr
git_branch: RELEASE_3_22
git_last_commit: 75a6d44
git_last_commit_date: 2025-10-29 10:37:06 -0500 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  


CHECK results for twoddpcr on taishan

To the developers/maintainers of the twoddpcr package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/twoddpcr.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: twoddpcr
Version: 1.34.0
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:twoddpcr.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings twoddpcr_1.34.0.tar.gz
StartedAt: 2025-12-02 15:45:17 -0000 (Tue, 02 Dec 2025)
EndedAt: 2025-12-02 15:48:00 -0000 (Tue, 02 Dec 2025)
EllapsedTime: 162.3 seconds
RetCode: 0
Status:   OK  
CheckDir: twoddpcr.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD check --install=check:twoddpcr.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings twoddpcr_1.34.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/twoddpcr.Rcheck’
* using R version 4.5.0 (2025-04-11)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘twoddpcr/DESCRIPTION’ ... OK
* this is package ‘twoddpcr’ version ‘1.34.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘twoddpcr’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in Rd file 'ggplot.well.Rd':
  ‘ggplot.well’ ‘ggplot.plate’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
knnClassify  17.520  0.088  17.657
ggplot.well   6.672  0.116   6.799
gridClassify  5.401  0.040   5.451
dropletPlot   5.335  0.080   5.433
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.22-bioc/meat/twoddpcr.Rcheck/00check.log’
for details.


Installation output

twoddpcr.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL twoddpcr
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’
* installing *source* package ‘twoddpcr’ ...
** this is package ‘twoddpcr’ version ‘1.34.0’
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (twoddpcr)

Tests output

twoddpcr.Rcheck/tests/testthat.Rout


R version 4.5.0 (2025-04-11) -- "How About a Twenty-Six"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(twoddpcr)
> 
> test_check("twoddpcr")
[ FAIL 0 | WARN 2 | SKIP 0 | PASS 155 ]

[ FAIL 0 | WARN 2 | SKIP 0 | PASS 155 ]
> 
> proc.time()
   user  system elapsed 
  8.149   0.277   8.435 

Example timings

twoddpcr.Rcheck/twoddpcr-Ex.timings

nameusersystemelapsed
amplitudes0.3630.0240.387
basicsSummary0.0060.0000.005
castSummary0.0220.0000.021
classCov0.080.000.08
classMeans0.2270.0000.227
classStats0.0830.0000.084
clusterCentres0.7950.0000.796
copiesSummary0.0070.0000.007
ddpcrPlate-class0.2820.0000.288
ddpcrWell-class0.0240.0000.025
ddpcrWell-methods0.4040.0000.405
dropletPlot5.3350.0805.433
exportTable0.1810.0040.189
extractPlateName0.0010.0000.000
extractWellNames0.0010.0000.000
facetPlot3.0760.0713.154
flatPlot4.5320.1274.668
fullCopiesSummary0.0080.0000.008
fullCountsSummary0.0360.0000.036
ggplot.well6.6720.1166.799
gridClassify5.4010.0405.451
heatPlot2.1140.0202.149
kmeansClassify1.2470.0241.274
knnClassify17.520 0.08817.657
mahalanobisRain0.9610.0080.972
mutantCopiesSummary0.0050.0000.005
numDroplets0.2690.0000.270
parseClusterCounts0.0120.0040.015
plateClassification1.2270.0161.246
plateClassificationMethod0.4140.0000.415
plateSummary1.9990.0002.004
positiveCounts0.0260.0040.030
readCSVDataFrame0.0120.0040.016
relabelClasses0.0590.0000.059
removeDropletClasses0.8020.0160.820
renormalisePlate3.6940.0123.715
sdRain2.9500.0112.991
setChannelNames0.0020.0000.002
setDropletVolume0.0010.0000.001
sortDataFrame0.0020.0000.002
sortWells0.2760.0120.288
thresholdClassify1.6760.0201.740
wellClassification0.0210.0000.025
wellClassificationMethod0.0210.0000.021
whiteTheme1.6080.0161.645
wildTypeCopiesSummary0.0050.0000.005