Multiple platform build/check report for BioC 3.21 - BUILD results for phyloseq on kunpeng2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4827
merida1	macOS 12.7.5 Monterey	x86_64	4.5.1 RC (2025-06-05 r88288) -- "Great Square Root"	4608
kjohnson1	macOS 13.6.6 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4549
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4581
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for phyloseq on kunpeng2

To the developers/maintainers of the phyloseq package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/phyloseq.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: phyloseq

Version: 1.52.0

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data phyloseq

StartedAt: 2025-09-16 10:40:21 -0000 (Tue, 16 Sep 2025)

EndedAt: 2025-09-16 10:43:04 -0000 (Tue, 16 Sep 2025)

EllapsedTime: 163.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data phyloseq
###
##############################################################################
##############################################################################


* checking for file ‘phyloseq/DESCRIPTION’ ... OK
* preparing ‘phyloseq’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘phyloseq-FAQ.Rmd’ using rmarkdown
Could not fetch http://i.imgur.com/j9NYXiQ.png
HttpExceptionRequest Request {
  host                 = "i.imgur.com"
  port                 = 80
  secure               = False
  requestHeaders       = []
  path                 = "/j9NYXiQ.png"
  queryString          = ""
  method               = "GET"
  proxy                = Nothing
  rawBody              = False
  redirectCount        = 10
  responseTimeout      = ResponseTimeoutDefault
  requestVersion       = HTTP/1.1
  proxySecureMode      = ProxySecureWithConnect
}
 ConnectionTimeout
Error: processing vignette 'phyloseq-FAQ.Rmd' failed with diagnostics:
pandoc document conversion failed with error 61
--- failed re-building ‘phyloseq-FAQ.Rmd’

--- re-building ‘phyloseq-analysis.Rmd’ using rmarkdown
--- finished re-building ‘phyloseq-analysis.Rmd’

--- re-building ‘phyloseq-basics.Rmd’ using rmarkdown
--- finished re-building ‘phyloseq-basics.Rmd’

--- re-building ‘phyloseq-mixture-models.Rmd’ using rmarkdown
--- finished re-building ‘phyloseq-mixture-models.Rmd’

SUMMARY: processing the following file failed:
  ‘phyloseq-FAQ.Rmd’

Error: Vignette re-building failed.
Execution halted