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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data pareg
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* checking for file ‘pareg/DESCRIPTION’ ... OK
* preparing ‘pareg’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘pareg.Rmd’ using rmarkdown
2025-10-13 21:25:54.239 R[9836:2936407] XType: com.apple.fonts is not accessible.
2025-10-13 21:25:54.239 R[9836:2936407] XType: XTFontStaticRegistry is enabled.
Channels:
 - anaconda
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.20.0/pareg/1.12.0/pareg

  added / updated specs:
    - python=3.12.8


The following NEW packages will be INSTALLED:

  bzip2              anaconda/osx-64::bzip2-1.0.8-h6c40b1e_6 
  ca-certificates    anaconda/osx-64::ca-certificates-2025.7.15-hecd8cb5_0 
  expat              anaconda/osx-64::expat-2.7.1-h6d0c2b6_0 
  libcxx             anaconda/osx-64::libcxx-19.1.7-haebbb44_3 
  libffi             anaconda/osx-64::libffi-3.4.4-hecd8cb5_1 
  ncurses            anaconda/osx-64::ncurses-6.5-h923df54_0 
  openssl            anaconda/osx-64::openssl-3.0.17-hee2dfae_0 
  pip                anaconda/noarch::pip-25.2-pyhc872135_0 
  python             anaconda/osx-64::python-3.12.8-hcd54a6c_0 
  readline           anaconda/osx-64::readline-8.3-h49f2429_0 
  setuptools         anaconda/osx-64::setuptools-78.1.1-py312hecd8cb5_0 
  sqlite             anaconda/osx-64::sqlite-3.50.2-hc8b0dd6_1 
  tk                 anaconda/osx-64::tk-8.6.15-h3a5a201_0 
  tzdata             anaconda/noarch::tzdata-2025b-h04d1e81_0 
  wheel              anaconda/osx-64::wheel-0.45.1-py312hecd8cb5_0 
  xz                 anaconda/osx-64::xz-5.6.4-h46256e1_1 
  zlib               anaconda/osx-64::zlib-1.2.13-h4b97444_1 


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
 - anaconda
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

# All requested packages already installed.

Channels:
 - anaconda
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed

LibMambaUnsatisfiableError: Encountered problems while solving:
  - nothing provides openssl >=1.1.1,<1.1.2.0a0 needed by python-3.7.1-haf84260_3

Could not solve for environment specs
The following packages are incompatible
├─ python 3.12.8**  is requested and can be installed;
└─ tensorflow 2.10.0**  is not installable because there are no viable options
   ├─ tensorflow 2.10.0 would require
   │  └─ tensorflow-base 2.10.0 eigen_py37h61e1807_0, which requires
   │     └─ python >=3.7,<3.8.0a0  but there are no viable options
   │        ├─ python [3.7.0|3.7.1|...|3.7.9] conflicts with any installable versions previously reported;
   │        └─ python 3.7.1 would require
   │           └─ openssl >=1.1.1,<1.1.2.0a0 , which does not exist (perhaps a missing channel);
   ├─ tensorflow 2.10.0 would require
   │  └─ tensorflow-base 2.10.0 eigen_py310h61e1807_0, which requires
   │     └─ python >=3.10,<3.11.0a0 , which conflicts with any installable versions previously reported;
   ├─ tensorflow 2.10.0 would require
   │  └─ tensorflow-base 2.10.0 eigen_py38h61e1807_0, which requires
   │     └─ python >=3.8,<3.9.0a0 , which conflicts with any installable versions previously reported;
   └─ tensorflow 2.10.0 would require
      └─ tensorflow-base 2.10.0 eigen_py39h61e1807_0, which requires
         └─ python >=3.9,<3.10.0a0 , which conflicts with any installable versions previously reported.


Quitting from pareg.Rmd:144-150 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! one or more Python packages failed to install [error code 1]
---
Backtrace:
    ▆
 1. └─pareg::pareg(...)
 2.   └─basilisk::basiliskStart(...)
 3.     └─basilisk::obtainEnvironmentPath(env)
 4.       └─basilisk::setupBasiliskEnv(...)
 5.         └─reticulate::conda_install(...)
 6.           └─reticulate:::stopf(fmt, result)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'pareg.Rmd' failed with diagnostics:
one or more Python packages failed to install [error code 1]
--- failed re-building ‘pareg.Rmd’

--- re-building ‘pathway_similarities.Rmd’ using rmarkdown
--- finished re-building ‘pathway_similarities.Rmd’

SUMMARY: processing the following file failed:
  ‘pareg.Rmd’

Error: Vignette re-building failed.
Execution halted