Multiple platform build/check report for BioC 3.20 - BUILD results for pareg on kjohnson1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4744
palomino8	Windows Server 2022 Datacenter	x64	4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves"	4487
merida1	macOS 12.7.5 Monterey	x86_64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4515
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4467
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for pareg on kjohnson1

To the developers/maintainers of the pareg package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/pareg.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: pareg

Version: 1.10.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data pareg

StartedAt: 2024-12-20 05:09:23 -0500 (Fri, 20 Dec 2024)

EndedAt: 2024-12-20 05:11:13 -0500 (Fri, 20 Dec 2024)

EllapsedTime: 110.2 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data pareg
###
##############################################################################
##############################################################################


* checking for file ‘pareg/DESCRIPTION’ ... OK
* preparing ‘pareg’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘pareg.Rmd’ using rmarkdown
2024-12-20 05:09:58.998 R[17810:77032228] XType: Using static font registry.
Channels:
 - anaconda
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.18.0/pareg/1.10.0/pareg

  added / updated specs:
    - python=3.10.14


The following NEW packages will be INSTALLED:

  bzip2              anaconda/osx-arm64::bzip2-1.0.8-h80987f9_6 
  ca-certificates    anaconda/osx-arm64::ca-certificates-2024.11.26-hca03da5_0 
  libffi             anaconda/osx-arm64::libffi-3.4.4-hca03da5_1 
  ncurses            anaconda/osx-arm64::ncurses-6.4-h313beb8_0 
  openssl            anaconda/osx-arm64::openssl-3.0.15-h80987f9_0 
  pip                anaconda/osx-arm64::pip-24.2-py310hca03da5_0 
  python             anaconda/osx-arm64::python-3.10.14-hb885b13_1 
  readline           anaconda/osx-arm64::readline-8.2-h1a28f6b_0 
  setuptools         anaconda/osx-arm64::setuptools-75.1.0-py310hca03da5_0 
  sqlite             anaconda/osx-arm64::sqlite-3.45.3-h80987f9_0 
  tk                 anaconda/osx-arm64::tk-8.6.14-h6ba3021_0 
  tzdata             anaconda/noarch::tzdata-2024b-h04d1e81_0 
  wheel              anaconda/osx-arm64::wheel-0.44.0-py310hca03da5_0 
  xz                 anaconda/osx-arm64::xz-5.4.6-h80987f9_1 
  zlib               anaconda/osx-arm64::zlib-1.2.13-h18a0788_1 


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
 - anaconda
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

# All requested packages already installed.

Channels:
 - anaconda
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed

LibMambaUnsatisfiableError: Encountered problems while solving:
  - package tensorflow-base-2.10.0-eigen_py38h4111cb8_0 requires python >=3.8,<3.9.0a0, but none of the providers can be installed

Could not solve for environment specs
The following packages are incompatible
├─ python 3.10.14**  is installable and it requires
│  └─ openssl >=3.0.13,<4.0a0 , which can be installed;
└─ tensorflow 2.10.0**  is not installable because there are no viable options
   ├─ tensorflow 2.10.0 would require
   │  └─ tensorflow-base 2.10.0 eigen_py38h4111cb8_0, which requires
   │     └─ python >=3.8,<3.9.0a0 , which conflicts with any installable versions previously reported;
   ├─ tensorflow 2.10.0 would require
   │  └─ tensorflow-base 2.10.0 eigen_py310h4111cb8_0, which requires
   │     └─ openssl >=1.1.1s,<1.1.2a , which conflicts with any installable versions previously reported;
   └─ tensorflow 2.10.0 would require
      └─ tensorflow-base 2.10.0 eigen_py39h4111cb8_0, which requires
         └─ python >=3.9,<3.10.0a0 , which conflicts with any installable versions previously reported.


Quitting from lines 145-150 [unnamed-chunk-9] (pareg.Rmd)
Error: processing vignette 'pareg.Rmd' failed with diagnostics:
one or more Python packages failed to install [error code 1]
--- failed re-building ‘pareg.Rmd’

--- re-building ‘pathway_similarities.Rmd’ using rmarkdown
--- finished re-building ‘pathway_similarities.Rmd’

SUMMARY: processing the following file failed:
  ‘pareg.Rmd’

Error: Vignette re-building failed.
Execution halted