Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-05-08 11:47 -0400 (Thu, 08 May 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4833 |
palomino7 | Windows Server 2022 Datacenter | x64 | 4.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" | 4574 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4599 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.5.0 RC (2025-04-04 r88129) -- "How About a Twenty-Six" | 4553 |
kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4570 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1316/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
mixOmics 6.32.0 (landing page) Eva Hamrud
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | TIMEOUT | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
To the developers/maintainers of the mixOmics package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mixOmics.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: mixOmics |
Version: 6.32.0 |
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data mixOmics |
StartedAt: 2025-05-06 02:25:19 -0000 (Tue, 06 May 2025) |
EndedAt: 2025-05-06 02:47:35 -0000 (Tue, 06 May 2025) |
EllapsedTime: 1335.8 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data mixOmics ### ############################################################################## ############################################################################## * checking for file ‘mixOmics/DESCRIPTION’ ... OK * preparing ‘mixOmics’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘vignette.Rmd’ using rmarkdown trying URL 'https://cloud.r-project.org/src/contrib/cli_3.6.5.tar.gz' trying URL 'https://cloud.r-project.org/src/contrib/utf8_1.2.5.tar.gz' trying URL 'https://cloud.r-project.org/src/contrib/scales_1.4.0.tar.gz' * installing *source* package ‘cli’ ... ** this is package ‘cli’ version ‘3.6.5’ ** package ‘cli’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fvisibility=hidden -fPIC -g -O2 -Wall -Werror=format-security -c ansi.c -o ansi.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fvisibility=hidden -fPIC -g -O2 -Wall -Werror=format-security -c cleancall.c -o cleancall.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fvisibility=hidden -fPIC -g -O2 -Wall -Werror=format-security -c diff.c -o diff.o diff.c: In function ‘clic_diff_chr’: diff.c:104:3: warning: ‘sn’ may be used uninitialized [-Wmaybe-uninitialized] 104 | SET_VECTOR_ELT(result, 0, allocVector(INTSXP, sn)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ diff.c:85:7: note: ‘sn’ was declared here 85 | int sn; | ^~ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fvisibility=hidden -fPIC -g -O2 -Wall -Werror=format-security -c errors.c -o errors.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fvisibility=hidden -fPIC -g -O2 -Wall -Werror=format-security -c glue.c -o glue.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fvisibility=hidden -fPIC -g -O2 -Wall -Werror=format-security -c init.c -o init.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fvisibility=hidden -fPIC -g -O2 -Wall -Werror=format-security -c inst.c -o inst.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fvisibility=hidden -fPIC -g -O2 -Wall -Werror=format-security -c keypress-unix.c -o keypress-unix.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fvisibility=hidden -fPIC -g -O2 -Wall -Werror=format-security -c keypress-win.c -o keypress-win.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fvisibility=hidden -fPIC -g -O2 -Wall -Werror=format-security -c keypress.c -o keypress.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fvisibility=hidden -fPIC -g -O2 -Wall -Werror=format-security -c md5.c -o md5.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fvisibility=hidden -fPIC -g -O2 -Wall -Werror=format-security -c progress-altrep.c -o progress-altrep.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fvisibility=hidden -fPIC -g -O2 -Wall -Werror=format-security -c progress.c -o progress.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fvisibility=hidden -fPIC -g -O2 -Wall -Werror=format-security -c sha1.c -o sha1.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fvisibility=hidden -fPIC -g -O2 -Wall -Werror=format-security -c sha256.c -o sha256.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fvisibility=hidden -fPIC -g -O2 -Wall -Werror=format-security -c thread.c -o thread.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fvisibility=hidden -fPIC -g -O2 -Wall -Werror=format-security -c tty.c -o tty.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fvisibility=hidden -fPIC -g -O2 -Wall -Werror=format-security -c utf8.c -o utf8.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fvisibility=hidden -fPIC -g -O2 -Wall -Werror=format-security -c utils.c -o utils.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fvisibility=hidden -fPIC -g -O2 -Wall -Werror=format-security -c vt.c -o vt.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fvisibility=hidden -fPIC -g -O2 -Wall -Werror=format-security -c vtparse.c -o vtparse.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fvisibility=hidden -fPIC -g -O2 -Wall -Werror=format-security -c vtparse_table.c -o vtparse_table.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fvisibility=hidden -fPIC -g -O2 -Wall -Werror=format-security -c win-utf8.c -o win-utf8.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fvisibility=hidden -fPIC -g -O2 -Wall -Werror=format-security -c winfiles.c -o winfiles.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fvisibility=hidden -fPIC -g -O2 -Wall -Werror=format-security -c xxhash.c -o xxhash.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fvisibility=hidden -fPIC -g -O2 -Wall -Werror=format-security -c xxhash2.c -o xxhash2.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -shared -L/home/biocbuild/R/R/lib -L/usr/local/lib -o cli.so ansi.o cleancall.o diff.o errors.o glue.o init.o inst.o keypress-unix.o keypress-win.o keypress.o md5.o progress-altrep.o progress.o sha1.o sha256.o thread.o tty.o utf8.o utils.o vt.o vtparse.o vtparse_table.o win-utf8.o winfiles.o xxhash.o xxhash2.o -lpthread -L/home/biocbuild/R/R/lib -lR installing to /home/biocbuild/tmp/RtmpBgoRFc/Rinst37f18970ec7593/00LOCK-cli/00new/cli/libs ** R ** exec ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cli) * installing *source* package ‘utf8’ ... ** this is package ‘utf8’ version ‘1.2.5’ ** package ‘utf8’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fPIC -g -O2 -Wall -Werror=format-security -c as_utf8.c -o as_utf8.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fPIC -g -O2 -Wall -Werror=format-security -c bytes.c -o bytes.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fPIC -g -O2 -Wall -Werror=format-security -c context.c -o context.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fPIC -g -O2 -Wall -Werror=format-security -c init.c -o init.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fPIC -g -O2 -Wall -Werror=format-security -c render.c -o render.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fPIC -g -O2 -Wall -Werror=format-security -c render_table.c -o render_table.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fPIC -g -O2 -Wall -Werror=format-security -c string.c -o string.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fPIC -g -O2 -Wall -Werror=format-security -c text.c -o text.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fPIC -g -O2 -Wall -Werror=format-security -c utf8_encode.c -o utf8_encode.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fPIC -g -O2 -Wall -Werror=format-security -c utf8_format.c -o utf8_format.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fPIC -g -O2 -Wall -Werror=format-security -c utf8_normalize.c -o utf8_normalize.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fPIC -g -O2 -Wall -Werror=format-security -c utf8_valid.c -o utf8_valid.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fPIC -g -O2 -Wall -Werror=format-security -c utf8_width.c -o utf8_width.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fPIC -g -O2 -Wall -Werror=format-security -c util.c -o util.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fPIC -g -O2 -Wall -Werror=format-security -c utf8lite/src/array.c -o utf8lite/src/array.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fPIC -g -O2 -Wall -Werror=format-security -c utf8lite/src/char.c -o utf8lite/src/char.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fPIC -g -O2 -Wall -Werror=format-security -c utf8lite/src/encode.c -o utf8lite/src/encode.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fPIC -g -O2 -Wall -Werror=format-security -c utf8lite/src/error.c -o utf8lite/src/error.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fPIC -g -O2 -Wall -Werror=format-security -c utf8lite/src/escape.c -o utf8lite/src/escape.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fPIC -g -O2 -Wall -Werror=format-security -c utf8lite/src/graph.c -o utf8lite/src/graph.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fPIC -g -O2 -Wall -Werror=format-security -c utf8lite/src/graphscan.c -o utf8lite/src/graphscan.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fPIC -g -O2 -Wall -Werror=format-security -c utf8lite/src/normalize.c -o utf8lite/src/normalize.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fPIC -g -O2 -Wall -Werror=format-security -c utf8lite/src/render.c -o utf8lite/src/render.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fPIC -g -O2 -Wall -Werror=format-security -c utf8lite/src/text.c -o utf8lite/src/text.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fPIC -g -O2 -Wall -Werror=format-security -c utf8lite/src/textassign.c -o utf8lite/src/textassign.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fPIC -g -O2 -Wall -Werror=format-security -c utf8lite/src/textiter.c -o utf8lite/src/textiter.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fPIC -g -O2 -Wall -Werror=format-security -c utf8lite/src/textmap.c -o utf8lite/src/textmap.o ar rcs libcutf8lite.a utf8lite/src/array.o utf8lite/src/char.o utf8lite/src/encode.o utf8lite/src/error.o utf8lite/src/escape.o utf8lite/src/graph.o utf8lite/src/graphscan.o utf8lite/src/normalize.o utf8lite/src/render.o utf8lite/src/text.o utf8lite/src/textassign.o utf8lite/src/textiter.o utf8lite/src/textmap.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -shared -L/home/biocbuild/R/R/lib -L/usr/local/lib -o utf8.so as_utf8.o bytes.o context.o init.o render.o render_table.o string.o text.o utf8_encode.o utf8_format.o utf8_normalize.o utf8_valid.o utf8_width.o util.o -L. -lcutf8lite -L/home/biocbuild/R/R/lib -lR installing to /home/biocbuild/tmp/RtmpBgoRFc/Rinst37f18970ec7593/00LOCK-utf8/00new/utf8/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (utf8) * installing *source* package ‘scales’ ... ** this is package ‘scales’ version ‘1.4.0’ ** package ‘scales’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scales) The downloaded source packages are in '/home/biocbuild/tmp/RtmphZPRpj/downloaded_packages' * installing *source* package ‘mixOmics’ ... ** this is package ‘mixOmics’ version ‘6.32.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mixOmics) Could not fetch http://mixomics.org/wp-content/uploads/2021/12/Key-Concepts-Selecting_Your_Method.png HttpExceptionRequest Request { host = "mixomics.org" port = 80 secure = False requestHeaders = [] path = "/wp-content/uploads/2021/12/Key-Concepts-Selecting_Your_Method.png" queryString = "" method = "GET" proxy = Nothing rawBody = False redirectCount = 10 responseTimeout = ResponseTimeoutDefault requestVersion = HTTP/1.1 proxySecureMode = ProxySecureWithConnect } (ConnectionFailure Network.Socket.getAddrInfo (called with preferred socket type/protocol: AddrInfo {addrFlags = [], addrFamily = AF_UNSPEC, addrSocketType = Stream, addrProtocol = 0, addrAddress = 0.0.0.0:0, addrCanonName = Nothing}, host name: Just "mixomics.org", service name: Just "80"): does not exist (Try again)) Error: processing vignette 'vignette.Rmd' failed with diagnostics: pandoc document conversion failed with error 61 --- failed re-building ‘vignette.Rmd’ SUMMARY: processing the following file failed: ‘vignette.Rmd’ Error: Vignette re-building failed. Execution halted