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This page was generated on 2025-05-08 11:47 -0400 (Thu, 08 May 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4833
palomino7Windows Server 2022 Datacenterx644.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" 4574
merida1macOS 12.7.5 Montereyx86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4599
kjohnson1macOS 13.6.6 Venturaarm644.5.0 RC (2025-04-04 r88129) -- "How About a Twenty-Six" 4553
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4570
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1316/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mixOmics 6.32.0  (landing page)
Eva Hamrud
Snapshot Date: 2025-05-05 13:40 -0400 (Mon, 05 May 2025)
git_url: https://git.bioconductor.org/packages/mixOmics
git_branch: RELEASE_3_21
git_last_commit: 36d4efc
git_last_commit_date: 2025-04-15 11:39:07 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    TIMEOUT    OK  
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped


BUILD results for mixOmics on kunpeng2

To the developers/maintainers of the mixOmics package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mixOmics.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: mixOmics
Version: 6.32.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data mixOmics
StartedAt: 2025-05-06 02:25:19 -0000 (Tue, 06 May 2025)
EndedAt: 2025-05-06 02:47:35 -0000 (Tue, 06 May 2025)
EllapsedTime: 1335.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data mixOmics
###
##############################################################################
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* checking for file ‘mixOmics/DESCRIPTION’ ... OK
* preparing ‘mixOmics’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘vignette.Rmd’ using rmarkdown
trying URL 'https://cloud.r-project.org/src/contrib/cli_3.6.5.tar.gz'
trying URL 'https://cloud.r-project.org/src/contrib/utf8_1.2.5.tar.gz'
trying URL 'https://cloud.r-project.org/src/contrib/scales_1.4.0.tar.gz'
* installing *source* package ‘cli’ ...
** this is package ‘cli’ version ‘3.6.5’
** package ‘cli’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include  -I/usr/local/include   -fvisibility=hidden -fPIC  -g -O2  -Wall -Werror=format-security -c ansi.c -o ansi.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include  -I/usr/local/include   -fvisibility=hidden -fPIC  -g -O2  -Wall -Werror=format-security -c cleancall.c -o cleancall.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include  -I/usr/local/include   -fvisibility=hidden -fPIC  -g -O2  -Wall -Werror=format-security -c diff.c -o diff.o
diff.c: In function ‘clic_diff_chr’:
diff.c:104:3: warning: ‘sn’ may be used uninitialized [-Wmaybe-uninitialized]
  104 |   SET_VECTOR_ELT(result, 0, allocVector(INTSXP, sn));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
diff.c:85:7: note: ‘sn’ was declared here
   85 |   int sn;
      |       ^~
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include  -I/usr/local/include   -fvisibility=hidden -fPIC  -g -O2  -Wall -Werror=format-security -c errors.c -o errors.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include  -I/usr/local/include   -fvisibility=hidden -fPIC  -g -O2  -Wall -Werror=format-security -c glue.c -o glue.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include  -I/usr/local/include   -fvisibility=hidden -fPIC  -g -O2  -Wall -Werror=format-security -c init.c -o init.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include  -I/usr/local/include   -fvisibility=hidden -fPIC  -g -O2  -Wall -Werror=format-security -c inst.c -o inst.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include  -I/usr/local/include   -fvisibility=hidden -fPIC  -g -O2  -Wall -Werror=format-security -c keypress-unix.c -o keypress-unix.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include  -I/usr/local/include   -fvisibility=hidden -fPIC  -g -O2  -Wall -Werror=format-security -c keypress-win.c -o keypress-win.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include  -I/usr/local/include   -fvisibility=hidden -fPIC  -g -O2  -Wall -Werror=format-security -c keypress.c -o keypress.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include  -I/usr/local/include   -fvisibility=hidden -fPIC  -g -O2  -Wall -Werror=format-security -c md5.c -o md5.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include  -I/usr/local/include   -fvisibility=hidden -fPIC  -g -O2  -Wall -Werror=format-security -c progress-altrep.c -o progress-altrep.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include  -I/usr/local/include   -fvisibility=hidden -fPIC  -g -O2  -Wall -Werror=format-security -c progress.c -o progress.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include  -I/usr/local/include   -fvisibility=hidden -fPIC  -g -O2  -Wall -Werror=format-security -c sha1.c -o sha1.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include  -I/usr/local/include   -fvisibility=hidden -fPIC  -g -O2  -Wall -Werror=format-security -c sha256.c -o sha256.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include  -I/usr/local/include   -fvisibility=hidden -fPIC  -g -O2  -Wall -Werror=format-security -c thread.c -o thread.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include  -I/usr/local/include   -fvisibility=hidden -fPIC  -g -O2  -Wall -Werror=format-security -c tty.c -o tty.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include  -I/usr/local/include   -fvisibility=hidden -fPIC  -g -O2  -Wall -Werror=format-security -c utf8.c -o utf8.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include  -I/usr/local/include   -fvisibility=hidden -fPIC  -g -O2  -Wall -Werror=format-security -c utils.c -o utils.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include  -I/usr/local/include   -fvisibility=hidden -fPIC  -g -O2  -Wall -Werror=format-security -c vt.c -o vt.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include  -I/usr/local/include   -fvisibility=hidden -fPIC  -g -O2  -Wall -Werror=format-security -c vtparse.c -o vtparse.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include  -I/usr/local/include   -fvisibility=hidden -fPIC  -g -O2  -Wall -Werror=format-security -c vtparse_table.c -o vtparse_table.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include  -I/usr/local/include   -fvisibility=hidden -fPIC  -g -O2  -Wall -Werror=format-security -c win-utf8.c -o win-utf8.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include  -I/usr/local/include   -fvisibility=hidden -fPIC  -g -O2  -Wall -Werror=format-security -c winfiles.c -o winfiles.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include  -I/usr/local/include   -fvisibility=hidden -fPIC  -g -O2  -Wall -Werror=format-security -c xxhash.c -o xxhash.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I../inst/include  -I/usr/local/include   -fvisibility=hidden -fPIC  -g -O2  -Wall -Werror=format-security -c xxhash2.c -o xxhash2.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -shared -L/home/biocbuild/R/R/lib -L/usr/local/lib -o cli.so ansi.o cleancall.o diff.o errors.o glue.o init.o inst.o keypress-unix.o keypress-win.o keypress.o md5.o progress-altrep.o progress.o sha1.o sha256.o thread.o tty.o utf8.o utils.o vt.o vtparse.o vtparse_table.o win-utf8.o winfiles.o xxhash.o xxhash2.o -lpthread -L/home/biocbuild/R/R/lib -lR
installing to /home/biocbuild/tmp/RtmpBgoRFc/Rinst37f18970ec7593/00LOCK-cli/00new/cli/libs
** R
** exec
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cli)
* installing *source* package ‘utf8’ ...
** this is package ‘utf8’ version ‘1.2.5’
** package ‘utf8’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   -Iutf8lite/src -fPIC  -g -O2  -Wall -Werror=format-security -c as_utf8.c -o as_utf8.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   -Iutf8lite/src -fPIC  -g -O2  -Wall -Werror=format-security -c bytes.c -o bytes.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   -Iutf8lite/src -fPIC  -g -O2  -Wall -Werror=format-security -c context.c -o context.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   -Iutf8lite/src -fPIC  -g -O2  -Wall -Werror=format-security -c init.c -o init.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   -Iutf8lite/src -fPIC  -g -O2  -Wall -Werror=format-security -c render.c -o render.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   -Iutf8lite/src -fPIC  -g -O2  -Wall -Werror=format-security -c render_table.c -o render_table.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   -Iutf8lite/src -fPIC  -g -O2  -Wall -Werror=format-security -c string.c -o string.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   -Iutf8lite/src -fPIC  -g -O2  -Wall -Werror=format-security -c text.c -o text.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   -Iutf8lite/src -fPIC  -g -O2  -Wall -Werror=format-security -c utf8_encode.c -o utf8_encode.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   -Iutf8lite/src -fPIC  -g -O2  -Wall -Werror=format-security -c utf8_format.c -o utf8_format.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   -Iutf8lite/src -fPIC  -g -O2  -Wall -Werror=format-security -c utf8_normalize.c -o utf8_normalize.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   -Iutf8lite/src -fPIC  -g -O2  -Wall -Werror=format-security -c utf8_valid.c -o utf8_valid.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   -Iutf8lite/src -fPIC  -g -O2  -Wall -Werror=format-security -c utf8_width.c -o utf8_width.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   -Iutf8lite/src -fPIC  -g -O2  -Wall -Werror=format-security -c util.c -o util.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   -Iutf8lite/src -fPIC  -g -O2  -Wall -Werror=format-security -c utf8lite/src/array.c -o utf8lite/src/array.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   -Iutf8lite/src -fPIC  -g -O2  -Wall -Werror=format-security -c utf8lite/src/char.c -o utf8lite/src/char.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   -Iutf8lite/src -fPIC  -g -O2  -Wall -Werror=format-security -c utf8lite/src/encode.c -o utf8lite/src/encode.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   -Iutf8lite/src -fPIC  -g -O2  -Wall -Werror=format-security -c utf8lite/src/error.c -o utf8lite/src/error.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   -Iutf8lite/src -fPIC  -g -O2  -Wall -Werror=format-security -c utf8lite/src/escape.c -o utf8lite/src/escape.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   -Iutf8lite/src -fPIC  -g -O2  -Wall -Werror=format-security -c utf8lite/src/graph.c -o utf8lite/src/graph.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   -Iutf8lite/src -fPIC  -g -O2  -Wall -Werror=format-security -c utf8lite/src/graphscan.c -o utf8lite/src/graphscan.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   -Iutf8lite/src -fPIC  -g -O2  -Wall -Werror=format-security -c utf8lite/src/normalize.c -o utf8lite/src/normalize.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   -Iutf8lite/src -fPIC  -g -O2  -Wall -Werror=format-security -c utf8lite/src/render.c -o utf8lite/src/render.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   -Iutf8lite/src -fPIC  -g -O2  -Wall -Werror=format-security -c utf8lite/src/text.c -o utf8lite/src/text.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   -Iutf8lite/src -fPIC  -g -O2  -Wall -Werror=format-security -c utf8lite/src/textassign.c -o utf8lite/src/textassign.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   -Iutf8lite/src -fPIC  -g -O2  -Wall -Werror=format-security -c utf8lite/src/textiter.c -o utf8lite/src/textiter.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include   -Iutf8lite/src -fPIC  -g -O2  -Wall -Werror=format-security -c utf8lite/src/textmap.c -o utf8lite/src/textmap.o
ar rcs libcutf8lite.a utf8lite/src/array.o utf8lite/src/char.o utf8lite/src/encode.o utf8lite/src/error.o utf8lite/src/escape.o utf8lite/src/graph.o utf8lite/src/graphscan.o utf8lite/src/normalize.o utf8lite/src/render.o utf8lite/src/text.o utf8lite/src/textassign.o utf8lite/src/textiter.o utf8lite/src/textmap.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -shared -L/home/biocbuild/R/R/lib -L/usr/local/lib -o utf8.so as_utf8.o bytes.o context.o init.o render.o render_table.o string.o text.o utf8_encode.o utf8_format.o utf8_normalize.o utf8_valid.o utf8_width.o util.o -L. -lcutf8lite -L/home/biocbuild/R/R/lib -lR
installing to /home/biocbuild/tmp/RtmpBgoRFc/Rinst37f18970ec7593/00LOCK-utf8/00new/utf8/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (utf8)
* installing *source* package ‘scales’ ...
** this is package ‘scales’ version ‘1.4.0’
** package ‘scales’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (scales)

The downloaded source packages are in
	'/home/biocbuild/tmp/RtmphZPRpj/downloaded_packages'
* installing *source* package ‘mixOmics’ ...
** this is package ‘mixOmics’ version ‘6.32.0’
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mixOmics)
Could not fetch http://mixomics.org/wp-content/uploads/2021/12/Key-Concepts-Selecting_Your_Method.png
HttpExceptionRequest Request {
  host                 = "mixomics.org"
  port                 = 80
  secure               = False
  requestHeaders       = []
  path                 = "/wp-content/uploads/2021/12/Key-Concepts-Selecting_Your_Method.png"
  queryString          = ""
  method               = "GET"
  proxy                = Nothing
  rawBody              = False
  redirectCount        = 10
  responseTimeout      = ResponseTimeoutDefault
  requestVersion       = HTTP/1.1
  proxySecureMode      = ProxySecureWithConnect
}
 (ConnectionFailure Network.Socket.getAddrInfo (called with preferred socket type/protocol: AddrInfo {addrFlags = [], addrFamily = AF_UNSPEC, addrSocketType = Stream, addrProtocol = 0, addrAddress = 0.0.0.0:0, addrCanonName = Nothing}, host name: Just "mixomics.org", service name: Just "80"): does not exist (Try again))
Error: processing vignette 'vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 61
--- failed re-building ‘vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘vignette.Rmd’

Error: Vignette re-building failed.
Execution halted