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This page was generated on 2024-12-23 12:06 -0500 (Mon, 23 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4744
palomino8Windows Server 2022 Datacenterx644.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" 4487
merida1macOS 12.7.5 Montereyx86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4515
kjohnson1macOS 13.6.6 Venturaarm644.4.2 (2024-10-31) -- "Pile of Leaves" 4467
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1155/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
maSigPro 1.78.0  (landing page)
Maria Jose Nueda
Snapshot Date: 2024-12-19 13:00 -0500 (Thu, 19 Dec 2024)
git_url: https://git.bioconductor.org/packages/maSigPro
git_branch: RELEASE_3_20
git_last_commit: fe4032a
git_last_commit_date: 2024-10-29 09:25:15 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published


CHECK results for maSigPro on merida1

To the developers/maintainers of the maSigPro package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/maSigPro.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: maSigPro
Version: 1.78.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings maSigPro_1.78.0.tar.gz
StartedAt: 2024-12-20 05:28:55 -0500 (Fri, 20 Dec 2024)
EndedAt: 2024-12-20 05:34:46 -0500 (Fri, 20 Dec 2024)
EllapsedTime: 350.7 seconds
RetCode: 0
Status:   OK  
CheckDir: maSigPro.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings maSigPro_1.78.0.tar.gz
###
##############################################################################
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* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/maSigPro.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘maSigPro/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘maSigPro’ version ‘1.78.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘maSigPro’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
getDSPatterns 26.497  0.138  28.000
IsoModel      26.354  0.167  27.442
seeDS         26.326  0.150  27.764
tableDS       26.332  0.142  28.068
ISOdata       26.149  0.315  28.331
getDS         26.000  0.157  26.944
ISOdesign     25.901  0.177  28.233
PodiumChange  25.640  0.151  25.910
IsoPlot       25.575  0.162  25.897
T.fit         12.911  0.053  13.018
get.siggenes   6.078  0.038   6.154
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

maSigPro.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL maSigPro
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘maSigPro’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (maSigPro)

Tests output


Example timings

maSigPro.Rcheck/maSigPro-Ex.timings

nameusersystemelapsed
ISOdata26.149 0.31528.331
ISOdesign25.901 0.17728.233
IsoModel26.354 0.16727.442
IsoPlot25.575 0.16225.897
NBdata0.0010.0030.004
NBdesign0.0020.0020.004
PlotGroups0.0640.0030.068
PlotProfiles0.0090.0020.010
PodiumChange25.640 0.15125.910
T.fit12.911 0.05313.018
average.rows0.0050.0010.006
data.abiotic0.0060.0030.008
edesign.abiotic0.0030.0020.006
edesignCT0.0010.0020.003
edesignDR0.0020.0020.004
get.siggenes6.0780.0386.154
getDS26.000 0.15726.944
getDSPatterns26.497 0.13828.000
i.rank0.0010.0010.001
maSigProUsersGuide0.0060.0070.020
make.design.matrix0.0120.0240.037
p.vector4.0030.0574.458
position000
reg.coeffs0.0010.0010.001
see.genes1.5080.0501.959
seeDS26.326 0.15027.764
stepback0.0520.0030.056
stepfor0.2260.0040.237
suma2Venn0.0300.0030.036
tableDS26.332 0.14228.068
two.ways.stepback0.1800.0040.206
two.ways.stepfor0.2420.0030.275