Britta Velten
| Snapshot Date: 2025-11-24 13:45 -0500 (Mon, 24 Nov 2025) |
| git_url: https://git.bioconductor.org/packages/graper |
| git_branch: RELEASE_3_22 |
| git_last_commit: 76fc31b |
| git_last_commit_date: 2025-10-29 10:49:21 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-11-27 12:05 -0500 (Thu, 27 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4876 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.2 Patched (2025-11-05 r88990) -- "[Not] Part in a Rumble" | 4656 |
| kjohnson1 | macOS 13.7.5 Ventura | arm64 | 4.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble" | 4602 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4668 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 922/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| graper 1.26.0 (landing page) Britta Velten
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.7.5 Ventura / arm64 | OK | OK | OK | NA | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the graper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: graper |
| Version: 1.26.0 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings graper_1.26.0.tar.gz |
| StartedAt: 2025-11-25 10:20:22 -0000 (Tue, 25 Nov 2025) |
| EndedAt: 2025-11-25 10:21:41 -0000 (Tue, 25 Nov 2025) |
| EllapsedTime: 79.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: graper.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings graper_1.26.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/graper.Rcheck’
* using R version 4.5.0 (2025-04-11)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.26.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’
* checking installed package size ... INFO
installed size is 6.0Mb
sub-directories of 1Mb or more:
libs 5.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.22-bioc/meat/graper.Rcheck/00check.log’
for details.
graper.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL graper ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’ * installing *source* package ‘graper’ ... ** this is package ‘graper’ version ‘1.26.0’ ** using staged installation ** libs using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.5.0/site-library/RcppArmadillo/include' -I'/home/biocbuild/R/R-4.5.0/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c RcppExports.cpp -o RcppExports.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.5.0/site-library/RcppArmadillo/include' -I'/home/biocbuild/R/R-4.5.0/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c fit_graper.cpp -o fit_graper.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.5.0/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -lopenblas -lgfortran -lm -L/home/biocbuild/R/R-4.5.0/lib -lR installing to /home/biocbuild/R/R-4.5.0/site-library/00LOCK-graper/00new/graper/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (graper)
graper.Rcheck/tests/testthat.Rout
R version 4.5.0 (2025-04-11) -- "How About a Twenty-Six"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(graper)
>
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-863.693
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-575.951
ELB improved by 287.742
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-519.359
ELB improved by 56.592
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-481.695
ELB improved by 37.6637
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-464.449
ELB improved by 17.2456
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-456.615
ELB improved by 7.83464
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.322
ELB improved by 5.29328
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.594
ELB improved by 4.72795
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.772
ELB improved by 4.82201
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.806
ELB improved by 4.966
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.003
ELB improved by 4.80228
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.883
ELB improved by 4.1201
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.87
ELB improved by 3.01308
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.949
ELB improved by 1.92123
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.759
ELB improved by 1.18955
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.971
ELB improved by 0.78834
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.398
ELB improved by 0.573216
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.944
ELB improved by 0.453407
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.56
ELB improved by 0.384044
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.219
ELB improved by 0.34141
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.906
ELB improved by 0.312658
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.615
ELB improved by 0.290932
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.343
ELB improved by 0.27259
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.087
ELB improved by 0.255732
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.848
ELB improved by 0.239451
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.624
ELB improved by 0.223429
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.416
ELB improved by 0.207682
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.224
ELB improved by 0.192394
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.046
ELB improved by 0.177798
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.882
ELB improved by 0.164107
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.731
ELB improved by 0.151478
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.591
ELB improved by 0.140001
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.461
ELB improved by 0.129707
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.34
ELB improved by 0.120578
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.228
ELB improved by 0.112567
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.122
ELB improved by 0.105607
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.023
ELB improved by 0.0996263
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.928
ELB improved by 0.0945539
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.838
ELB improved by 0.0903265
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.751
ELB improved by 0.0868919
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.667
ELB improved by 0.0842126
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.584
ELB improved by 0.0822677
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.503
ELB improved by 0.081057
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.423
ELB improved by 0.0806052
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.342
ELB improved by 0.080971
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.259
ELB improved by 0.0822615
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.175
ELB improved by 0.0846587
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.086
ELB improved by 0.0884662
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.992
ELB improved by 0.0941933
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.889
ELB improved by 0.102689
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.774
ELB improved by 0.115296
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.64
ELB improved by 0.133761
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.481
ELB improved by 0.158936
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.294
ELB improved by 0.187005
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.087
ELB improved by 0.206914
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.878
ELB improved by 0.209734
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.677
ELB improved by 0.200324
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.489
ELB improved by 0.188747
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.31
ELB improved by 0.179155
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.139
ELB improved by 0.171028
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.976
ELB improved by 0.162939
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.822
ELB improved by 0.153961
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.678
ELB improved by 0.14378
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.545
ELB improved by 0.132509
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.425
ELB improved by 0.120485
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.317
ELB improved by 0.108133
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.221
ELB improved by 0.0958573
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.137
ELB improved by 0.0840014
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.064
ELB improved by 0.0728273
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.001
ELB improved by 0.0625224
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.948
ELB improved by 0.0532084
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.903
ELB improved by 0.0449469
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.866
ELB improved by 0.037745
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.834
ELB improved by 0.0315633
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.808
ELB improved by 0.0263272
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.786
ELB improved by 0.02194
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.767
ELB improved by 0.0182948
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.752
ELB improved by 0.0152849
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.739
ELB improved by 0.0128101
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.729
ELB improved by 0.0107802
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.719
ELB improved by 0.00911695
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-866.325
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-577.792
ELB improved by 288.534
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-520.694
ELB improved by 57.0975
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-482.416
ELB improved by 38.2782
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-463.643
ELB improved by 18.7735
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-456.039
ELB improved by 7.60369
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.989
ELB improved by 4.0495
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.923
ELB improved by 3.06599
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.206
ELB improved by 2.71771
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.628
ELB improved by 2.57793
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.109
ELB improved by 2.51928
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.632
ELB improved by 2.47679
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.234
ELB improved by 2.39807
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.998
ELB improved by 2.23577
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.026
ELB improved by 1.97195
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.388
ELB improved by 1.6378
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.092
ELB improved by 1.29572
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.092
ELB improved by 1.00014
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.318
ELB improved by 0.774018
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.706
ELB improved by 0.612563
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.207
ELB improved by 0.498777
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.791
ELB improved by 0.415734
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.439
ELB improved by 0.351736
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.139
ELB improved by 0.300349
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.881
ELB improved by 0.258321
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.657
ELB improved by 0.223728
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.462
ELB improved by 0.195159
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.29
ELB improved by 0.171495
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.139
ELB improved by 0.151861
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.003
ELB improved by 0.135562
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.881
ELB improved by 0.122032
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.77
ELB improved by 0.110803
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.669
ELB improved by 0.101485
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.575
ELB improved by 0.093758
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.488
ELB improved by 0.0873615
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.405
ELB improved by 0.0820877
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.328
ELB improved by 0.0777727
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.253
ELB improved by 0.074289
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.182
ELB improved by 0.0715394
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.112
ELB improved by 0.0694523
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.044
ELB improved by 0.0679776
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.977
ELB improved by 0.0670846
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.911
ELB improved by 0.0667605
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.844
ELB improved by 0.0670104
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.776
ELB improved by 0.0678576
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.706
ELB improved by 0.0693462
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.635
ELB improved by 0.071544
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.56
ELB improved by 0.0745475
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.482
ELB improved by 0.0784888
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.398
ELB improved by 0.0835446
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.308
ELB improved by 0.0899464
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.21
ELB improved by 0.0979922
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.102
ELB improved by 0.108054
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.982
ELB improved by 0.120576
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.846
ELB improved by 0.136046
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.691
ELB improved by 0.154927
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.513
ELB improved by 0.177536
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.309
ELB improved by 0.203937
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.075
ELB improved by 0.233983
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.808
ELB improved by 0.267684
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.502
ELB improved by 0.305758
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.152
ELB improved by 0.349402
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.755
ELB improved by 0.397606
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.313
ELB improved by 0.441619
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.848
ELB improved by 0.46499
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.387
ELB improved by 0.460995
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.944
ELB improved by 0.443275
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.516
ELB improved by 0.427763
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.093
ELB improved by 0.422671
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.659
ELB improved by 0.434499
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.189
ELB improved by 0.469509
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.664
ELB improved by 0.525227
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.082
ELB improved by 0.582192
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.458
ELB improved by 0.623965
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.787
ELB improved by 0.671036
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.038
ELB improved by 0.748941
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.213
ELB improved by 0.825022
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.364
ELB improved by 0.849063
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.54
ELB improved by 0.824045
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.751
ELB improved by 0.788978
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.005
ELB improved by 0.746196
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.401
ELB improved by 0.60369
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.007
ELB improved by 0.394439
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.772
ELB improved by 0.235144
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.628
ELB improved by 0.143271
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.532
ELB improved by 0.0960256
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.458
ELB improved by 0.0742299
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.391
ELB improved by 0.0670317
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.322
ELB improved by 0.0684983
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.249
ELB improved by 0.0737648
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.172
ELB improved by 0.0767111
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.1
ELB improved by 0.0719261
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.041
ELB improved by 0.0595252
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.996
ELB improved by 0.0446926
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.964
ELB improved by 0.0320178
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.941
ELB improved by 0.0229104
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.924
ELB improved by 0.0168628
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.911
ELB improved by 0.0129449
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.901
ELB improved by 0.0103932
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.892
ELB improved by 0.00869221
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-863.253
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-564.817
ELB improved by 298.436
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-508.456
ELB improved by 56.3609
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-477.119
ELB improved by 31.3374
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-462.113
ELB improved by 15.0056
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.704
ELB improved by 8.40954
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.771
ELB improved by 6.9332
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.129
ELB improved by 7.64147
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.213
ELB improved by 8.91644
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.936
ELB improved by 9.27685
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.131
ELB improved by 7.80506
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.67
ELB improved by 5.46064
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.085
ELB improved by 3.5846
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.642
ELB improved by 2.44345
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.815
ELB improved by 1.82688
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.408
ELB improved by 1.40759
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.415
ELB improved by 0.992126
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.721
ELB improved by 0.69395
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.197
ELB improved by 0.524259
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.773
ELB improved by 0.424654
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.411
ELB improved by 0.361208
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.093
ELB improved by 0.318157
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.806
ELB improved by 0.287533
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.541
ELB improved by 0.264837
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.294
ELB improved by 0.24731
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.06
ELB improved by 0.233172
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.839
ELB improved by 0.221245
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.628
ELB improved by 0.210752
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.427
ELB improved by 0.201199
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.235
ELB improved by 0.192293
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.051
ELB improved by 0.183885
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.875
ELB improved by 0.175921
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.707
ELB improved by 0.1684
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.545
ELB improved by 0.161351
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.39
ELB improved by 0.154803
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.242
ELB improved by 0.148778
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.098
ELB improved by 0.143282
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.96
ELB improved by 0.138302
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.826
ELB improved by 0.133807
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.697
ELB improved by 0.129752
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.57
ELB improved by 0.126086
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.448
ELB improved by 0.122746
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.328
ELB improved by 0.11967
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.211
ELB improved by 0.116794
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.097
ELB improved by 0.114056
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.986
ELB improved by 0.111396
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.877
ELB improved by 0.108756
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.771
ELB improved by 0.106084
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.668
ELB improved by 0.10333
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.567
ELB improved by 0.100451
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.47
ELB improved by 0.0974103
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.376
ELB improved by 0.094181
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.285
ELB improved by 0.0907462
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.198
ELB improved by 0.0871015
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.115
ELB improved by 0.0832555
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.035
ELB improved by 0.0792287
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.96
ELB improved by 0.075052
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.889
ELB improved by 0.070763
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.823
ELB improved by 0.0664029
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.761
ELB improved by 0.0620138
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.703
ELB improved by 0.0576367
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.65
ELB improved by 0.0533113
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.601
ELB improved by 0.0490755
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.556
ELB improved by 0.0449654
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.515
ELB improved by 0.0410151
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.478
ELB improved by 0.0372547
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.444
ELB improved by 0.0337094
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.414
ELB improved by 0.0303979
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.386
ELB improved by 0.0273317
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.362
ELB improved by 0.0245155
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.34
ELB improved by 0.0219473
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.32
ELB improved by 0.0196199
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.303
ELB improved by 0.0175223
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.287
ELB improved by 0.0156405
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.273
ELB improved by 0.0139589
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.261
ELB improved by 0.0124612
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.25
ELB improved by 0.0111308
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.24
ELB improved by 0.00995178
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-808.382
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-584.42
ELB improved by 223.962
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-525.315
ELB improved by 59.1053
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-477.203
ELB improved by 48.1126
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.054
ELB improved by 26.1485
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.938
ELB improved by 11.1162
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.344
ELB improved by 5.59428
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.663
ELB improved by 3.68104
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.743
ELB improved by 2.91975
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.188
ELB improved by 2.55493
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.869
ELB improved by 2.31933
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.757
ELB improved by 2.1115
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.865
ELB improved by 1.89192
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.219
ELB improved by 1.64622
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.841
ELB improved by 1.37754
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.737
ELB improved by 1.10437
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.885
ELB improved by 0.852416
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.243
ELB improved by 0.642061
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.762
ELB improved by 0.480757
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.397
ELB improved by 0.364474
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.114
ELB improved by 0.283591
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.886
ELB improved by 0.227922
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.697
ELB improved by 0.18916
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.535
ELB improved by 0.161382
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.395
ELB improved by 0.140677
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.27
ELB improved by 0.124571
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.158
ELB improved by 0.111526
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.058
ELB improved by 0.100592
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.967
ELB improved by 0.0911848
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.884
ELB improved by 0.0829415
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.808
ELB improved by 0.0756353
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.739
ELB improved by 0.0691204
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.676
ELB improved by 0.0632971
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.618
ELB improved by 0.0580899
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.564
ELB improved by 0.053436
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.515
ELB improved by 0.0492789
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.469
ELB improved by 0.0455662
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.427
ELB improved by 0.042249
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.388
ELB improved by 0.0392825
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.351
ELB improved by 0.036626
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.317
ELB improved by 0.0342434
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.285
ELB improved by 0.0321027
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.255
ELB improved by 0.030176
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.226
ELB improved by 0.028439
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.199
ELB improved by 0.0268706
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.174
ELB improved by 0.0254524
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.15
ELB improved by 0.0241685
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.127
ELB improved by 0.0230051
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.105
ELB improved by 0.02195
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.084
ELB improved by 0.0209925
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.064
ELB improved by 0.0201232
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.044
ELB improved by 0.0193338
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.026
ELB improved by 0.0186169
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.008
ELB improved by 0.017966
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.99
ELB improved by 0.0173751
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.973
ELB improved by 0.016839
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.957
ELB improved by 0.016353
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.941
ELB improved by 0.0159128
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.926
ELB improved by 0.0155145
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.911
ELB improved by 0.0151548
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.896
ELB improved by 0.0148304
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.881
ELB improved by 0.0145384
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.867
ELB improved by 0.0142764
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.853
ELB improved by 0.0140418
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.839
ELB improved by 0.0138327
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.825
ELB improved by 0.013647
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.812
ELB improved by 0.013483
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.799
ELB improved by 0.0133391
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.785
ELB improved by 0.0132139
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.772
ELB improved by 0.0131062
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.759
ELB improved by 0.0130148
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.746
ELB improved by 0.0129388
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.733
ELB improved by 0.0128774
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.721
ELB improved by 0.01283
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.708
ELB improved by 0.012796
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.695
ELB improved by 0.0127751
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.682
ELB improved by 0.0127673
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.669
ELB improved by 0.0127725
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.657
ELB improved by 0.012791
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.644
ELB improved by 0.0128234
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.631
ELB improved by 0.0128702
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.618
ELB improved by 0.0129326
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.605
ELB improved by 0.0130119
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.592
ELB improved by 0.0131096
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.579
ELB improved by 0.0132279
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.565
ELB improved by 0.0133692
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.552
ELB improved by 0.0135364
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.538
ELB improved by 0.013733
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.524
ELB improved by 0.013963
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.51
ELB improved by 0.0142311
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.495
ELB improved by 0.0145424
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.48
ELB improved by 0.0149027
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.465
ELB improved by 0.0153186
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.449
ELB improved by 0.0157965
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.433
ELB improved by 0.0163434
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.416
ELB improved by 0.0169656
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.398
ELB improved by 0.0176686
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.38
ELB improved by 0.0184563
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.361
ELB improved by 0.0193301
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.34
ELB improved by 0.020288
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.319
ELB improved by 0.0213242
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.297
ELB improved by 0.0224292
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.273
ELB improved by 0.0235901
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.248
ELB improved by 0.0247926
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.222
ELB improved by 0.0260228
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.195
ELB improved by 0.0272693
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.166
ELB improved by 0.0285258
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.137
ELB improved by 0.0297915
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.105
ELB improved by 0.0310713
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.073
ELB improved by 0.0323754
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.039
ELB improved by 0.0337183
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.004
ELB improved by 0.0351178
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.968
ELB improved by 0.0365941
iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.929
ELB improved by 0.0381702
iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.89
ELB improved by 0.0398716
iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.848
ELB improved by 0.0417267
iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.804
ELB improved by 0.0437675
iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.758
ELB improved by 0.0460308
iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.71
ELB improved by 0.0485591
iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.658
ELB improved by 0.0514035
iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.603
ELB improved by 0.0546259
iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.545
ELB improved by 0.0583035
iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.483
ELB improved by 0.0625353
iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.415
ELB improved by 0.0674506
iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.342
ELB improved by 0.0732225
iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.262
ELB improved by 0.0800877
iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.174
ELB improved by 0.0883734
iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.075
ELB improved by 0.0985321
iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.964
ELB improved by 0.111163
iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.837
ELB improved by 0.126956
iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.69
ELB improved by 0.146408
iteration 132
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.521
ELB improved by 0.169079
iteration 133
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.329
ELB improved by 0.192568
iteration 134
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.116
ELB improved by 0.212428
iteration 135
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.892
ELB improved by 0.224308
iteration 136
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.666
ELB improved by 0.22642
iteration 137
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.446
ELB improved by 0.219516
iteration 138
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.24
ELB improved by 0.205843
iteration 139
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.052
ELB improved by 0.188568
iteration 140
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.881
ELB improved by 0.170598
iteration 141
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.728
ELB improved by 0.153179
iteration 142
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.592
ELB improved by 0.135671
iteration 143
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.475
ELB improved by 0.116843
iteration 144
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.379
ELB improved by 0.0967055
iteration 145
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.302
ELB improved by 0.0769843
iteration 146
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.242
ELB improved by 0.0596716
iteration 147
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.196
ELB improved by 0.0456678
iteration 148
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.162
ELB improved by 0.0348085
iteration 149
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.135
ELB improved by 0.0265072
iteration 150
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.115
ELB improved by 0.0201758
iteration 151
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.1
ELB improved by 0.0153474
iteration 152
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.088
ELB improved by 0.011672
iteration 153
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.079
ELB improved by 0.00888496
ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
>
> proc.time()
user system elapsed
2.868 0.211 3.094
graper.Rcheck/graper-Ex.timings
| name | user | system | elapsed | |
| coef.graper | 0.052 | 0.000 | 0.052 | |
| getPIPs | 0.047 | 0.000 | 0.048 | |
| graper | 0.069 | 0.004 | 0.073 | |
| makeExampleData | 0.009 | 0.000 | 0.008 | |
| makeExampleDataWithUnequalGroups | 0.006 | 0.004 | 0.009 | |
| plotELBO | 0.413 | 0.004 | 0.419 | |
| plotGroupPenalties | 1.502 | 0.056 | 1.561 | |
| plotPosterior | 0.956 | 0.012 | 0.970 | |
| predict.graper | 0.977 | 0.032 | 1.011 | |
| print.graper | 0.047 | 0.000 | 0.047 | |