Britta Velten
| Snapshot Date: 2025-12-15 13:45 -0500 (Mon, 15 Dec 2025) |
| git_url: https://git.bioconductor.org/packages/graper |
| git_branch: RELEASE_3_22 |
| git_last_commit: 76fc31b |
| git_last_commit_date: 2025-10-29 10:49:21 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-12-18 12:03 -0500 (Thu, 18 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4882 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4673 |
| kjohnson1 | macOS 13.7.5 Ventura | arm64 | 4.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble" | 4607 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4671 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 922/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| graper 1.26.0 (landing page) Britta Velten
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.7.5 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the graper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: graper |
| Version: 1.26.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings graper_1.26.0.tar.gz |
| StartedAt: 2025-12-16 00:14:35 -0500 (Tue, 16 Dec 2025) |
| EndedAt: 2025-12-16 00:16:07 -0500 (Tue, 16 Dec 2025) |
| EllapsedTime: 92.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: graper.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings graper_1.26.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/graper.Rcheck’
* using R version 4.5.2 (2025-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.26.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
* checking installed package size ... INFO
installed size is 6.1Mb
sub-directories of 1Mb or more:
libs 6.0Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.22-bioc/meat/graper.Rcheck/00check.log’
for details.
graper.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL graper ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’ * installing *source* package ‘graper’ ... ** this is package ‘graper’ version ‘1.26.0’ ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c fit_graper.cpp -o fit_graper.o g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.22-bioc/R/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -llapack -L/home/biocbuild/bbs-3.22-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.22-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.22-bioc/R/site-library/00LOCK-graper/00new/graper/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (graper)
graper.Rcheck/tests/testthat.Rout
R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(graper)
>
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-822.757
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-565.079
ELB improved by 257.678
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-506.154
ELB improved by 58.9249
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-463.203
ELB improved by 42.9514
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.968
ELB improved by 20.2346
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.468
ELB improved by 7.50034
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.921
ELB improved by 3.54698
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.534
ELB improved by 2.38656
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.548
ELB improved by 1.98636
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.706
ELB improved by 1.84227
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.91
ELB improved by 1.7955
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.125
ELB improved by 1.78519
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.348
ELB improved by 1.77681
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.607
ELB improved by 1.74094
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.957
ELB improved by 1.64982
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.47
ELB improved by 1.48776
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.204
ELB improved by 1.26563
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.183
ELB improved by 1.02132
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.384
ELB improved by 0.798592
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.762
ELB improved by 0.621943
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.272
ELB improved by 0.489925
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.884
ELB improved by 0.388399
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.576
ELB improved by 0.30729
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.332
ELB improved by 0.244196
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.134
ELB improved by 0.19787
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.969
ELB improved by 0.165033
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.828
ELB improved by 0.141788
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.703
ELB improved by 0.125019
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.59
ELB improved by 0.112627
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.487
ELB improved by 0.103273
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.39
ELB improved by 0.0961044
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.3
ELB improved by 0.0905655
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.214
ELB improved by 0.0862834
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.131
ELB improved by 0.0830013
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.05
ELB improved by 0.080539
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.971
ELB improved by 0.0787697
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.894
ELB improved by 0.0776063
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.817
ELB improved by 0.0769913
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.74
ELB improved by 0.0768903
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.663
ELB improved by 0.0772846
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.584
ELB improved by 0.0781626
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.505
ELB improved by 0.0795066
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.424
ELB improved by 0.0812748
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.34
ELB improved by 0.0833809
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.255
ELB improved by 0.085681
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.167
ELB improved by 0.0879826
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.076
ELB improved by 0.0900904
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.985
ELB improved by 0.0918795
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.891
ELB improved by 0.0933577
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.797
ELB improved by 0.0946713
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.701
ELB improved by 0.0960505
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.603
ELB improved by 0.0977384
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.503
ELB improved by 0.0999535
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.4
ELB improved by 0.102899
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.293
ELB improved by 0.106801
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.181
ELB improved by 0.111966
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.062
ELB improved by 0.118848
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.934
ELB improved by 0.128164
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.793
ELB improved by 0.1411
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.633
ELB improved by 0.159697
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.446
ELB improved by 0.187543
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.215
ELB improved by 0.230655
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.918
ELB improved by 0.296897
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.53
ELB improved by 0.388375
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.043
ELB improved by 0.487142
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.474
ELB improved by 0.568534
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.837
ELB improved by 0.637453
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.126
ELB improved by 0.710276
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.341
ELB improved by 0.785152
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.497
ELB improved by 0.843937
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.633
ELB improved by 0.863946
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.802
ELB improved by 0.831039
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.054
ELB improved by 0.748868
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.416
ELB improved by 0.637644
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.893
ELB improved by 0.523147
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.468
ELB improved by 0.424343
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.121
ELB improved by 0.347514
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.832
ELB improved by 0.289314
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.587
ELB improved by 0.244649
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.376
ELB improved by 0.210982
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.19
ELB improved by 0.186023
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.025
ELB improved by 0.1647
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.884
ELB improved by 0.14087
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.772
ELB improved by 0.112823
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.687
ELB improved by 0.0848451
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.625
ELB improved by 0.0617541
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.58
ELB improved by 0.0449544
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.547
ELB improved by 0.0334334
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.521
ELB improved by 0.0256343
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.501
ELB improved by 0.0202779
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.484
ELB improved by 0.0164927
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.47
ELB improved by 0.0137266
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.459
ELB improved by 0.0116365
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.449
ELB improved by 0.010008
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.44
ELB improved by 0.00870549
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-839.724
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-577.956
ELB improved by 261.769
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-517.277
ELB improved by 60.6782
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-476.059
ELB improved by 41.2189
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.968
ELB improved by 20.0906
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.702
ELB improved by 8.26581
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.408
ELB improved by 4.29394
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.219
ELB improved by 3.18928
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.24
ELB improved by 2.97882
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.186
ELB improved by 3.05393
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.024
ELB improved by 3.16169
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.908
ELB improved by 3.11697
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.085
ELB improved by 2.82247
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.748
ELB improved by 2.33755
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.949
ELB improved by 1.79888
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.634
ELB improved by 1.31501
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.701
ELB improved by 0.932194
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.044
ELB improved by 0.657329
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.567
ELB improved by 0.477244
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.202
ELB improved by 0.364967
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.907
ELB improved by 0.294423
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.659
ELB improved by 0.24799
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.444
ELB improved by 0.215471
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.253
ELB improved by 0.191251
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.081
ELB improved by 0.172224
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.924
ELB improved by 0.156625
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.78
ELB improved by 0.143408
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.649
ELB improved by 0.131929
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.527
ELB improved by 0.12178
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.414
ELB improved by 0.112696
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.31
ELB improved by 0.104499
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.213
ELB improved by 0.0970713
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.122
ELB improved by 0.0903325
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.038
ELB improved by 0.0842267
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.959
ELB improved by 0.0787151
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.885
ELB improved by 0.0737714
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.816
ELB improved by 0.0693798
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.751
ELB improved by 0.0655353
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.688
ELB improved by 0.0622458
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.629
ELB improved by 0.0595369
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.571
ELB improved by 0.0574587
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.515
ELB improved by 0.0560947
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.46
ELB improved by 0.0555735
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.404
ELB improved by 0.0560767
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.346
ELB improved by 0.0578315
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.285
ELB improved by 0.0610574
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.219
ELB improved by 0.0658148
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.147
ELB improved by 0.0717279
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.069
ELB improved by 0.077708
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.987
ELB improved by 0.082089
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.904
ELB improved by 0.0834821
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.822
ELB improved by 0.0817263
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.744
ELB improved by 0.0778421
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.671
ELB improved by 0.0731407
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.603
ELB improved by 0.0685585
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.538
ELB improved by 0.0645693
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.477
ELB improved by 0.0613456
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.418
ELB improved by 0.0589072
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.361
ELB improved by 0.0572091
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.304
ELB improved by 0.056185
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.249
ELB improved by 0.0557692
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.193
ELB improved by 0.0559059
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.136
ELB improved by 0.0565529
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.078
ELB improved by 0.0576813
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.019
ELB improved by 0.059274
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.958
ELB improved by 0.0613224
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.894
ELB improved by 0.0638235
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.827
ELB improved by 0.0667758
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.757
ELB improved by 0.0701744
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.683
ELB improved by 0.0740065
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.605
ELB improved by 0.0782446
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.522
ELB improved by 0.0828401
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.434
ELB improved by 0.0877165
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.342
ELB improved by 0.0927621
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.244
ELB improved by 0.0978258
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.141
ELB improved by 0.102714
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.034
ELB improved by 0.107195
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.923
ELB improved by 0.111005
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.809
ELB improved by 0.113864
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.693
ELB improved by 0.115494
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.578
ELB improved by 0.115642
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.464
ELB improved by 0.114107
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.353
ELB improved by 0.110768
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.247
ELB improved by 0.105619
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.148
ELB improved by 0.0988036
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.058
ELB improved by 0.090625
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.976
ELB improved by 0.0815203
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.904
ELB improved by 0.0719941
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.842
ELB improved by 0.0625345
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.788
ELB improved by 0.0535446
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.743
ELB improved by 0.0453074
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.705
ELB improved by 0.0379838
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.673
ELB improved by 0.0316301
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.647
ELB improved by 0.0262248
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.625
ELB improved by 0.021696
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.607
ELB improved by 0.0179446
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.593
ELB improved by 0.0148623
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.58
ELB improved by 0.0123432
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.57
ELB improved by 0.0102906
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.561
ELB improved by 0.00862006
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-870.045
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-573.777
ELB improved by 296.268
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-513.121
ELB improved by 60.6559
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-474.358
ELB improved by 38.7629
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.836
ELB improved by 16.5219
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.546
ELB improved by 6.29085
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.899
ELB improved by 3.64622
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.923
ELB improved by 2.97645
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.178
ELB improved by 2.74493
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.52
ELB improved by 2.65831
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.889
ELB improved by 2.63107
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.261
ELB improved by 2.628
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.635
ELB improved by 2.62604
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.041
ELB improved by 2.59401
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.558
ELB improved by 2.48278
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.321
ELB improved by 2.2368
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.477
ELB improved by 1.84446
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.092
ELB improved by 1.38423
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.119
ELB improved by 0.972865
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.447
ELB improved by 0.672497
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.97
ELB improved by 0.47705
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.616
ELB improved by 0.354326
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.34
ELB improved by 0.276012
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.115
ELB improved by 0.22407
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.927
ELB improved by 0.188023
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.766
ELB improved by 0.16182
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.624
ELB improved by 0.141923
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.497
ELB improved by 0.126241
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.384
ELB improved by 0.113517
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.281
ELB improved by 0.102973
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.187
ELB improved by 0.0941048
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.1
ELB improved by 0.0865669
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.02
ELB improved by 0.0801099
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.946
ELB improved by 0.0745426
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.876
ELB improved by 0.0697113
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.81
ELB improved by 0.0654869
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.749
ELB improved by 0.0617581
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.69
ELB improved by 0.0584287
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.635
ELB improved by 0.0554168
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.582
ELB improved by 0.0526565
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.532
ELB improved by 0.0500997
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.484
ELB improved by 0.0477163
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.439
ELB improved by 0.0454934
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.395
ELB improved by 0.0434314
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.354
ELB improved by 0.0415396
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.314
ELB improved by 0.0398312
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.276
ELB improved by 0.0383183
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.239
ELB improved by 0.0370097
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.203
ELB improved by 0.035909
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.168
ELB improved by 0.0350149
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.134
ELB improved by 0.0343219
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.1
ELB improved by 0.0338216
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.066
ELB improved by 0.0335042
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.033
ELB improved by 0.0333599
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.999
ELB improved by 0.03338
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.966
ELB improved by 0.0335574
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.932
ELB improved by 0.0338876
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.898
ELB improved by 0.0343684
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.863
ELB improved by 0.0350005
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.827
ELB improved by 0.0357872
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.79
ELB improved by 0.036735
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.752
ELB improved by 0.0378529
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.713
ELB improved by 0.0391534
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.672
ELB improved by 0.0406521
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.63
ELB improved by 0.0423684
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.586
ELB improved by 0.0443256
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.539
ELB improved by 0.0465514
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.49
ELB improved by 0.0490788
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.438
ELB improved by 0.0519461
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.383
ELB improved by 0.0551985
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.324
ELB improved by 0.0588882
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.261
ELB improved by 0.0630762
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.193
ELB improved by 0.0678332
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.12
ELB improved by 0.0732415
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.041
ELB improved by 0.0793971
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.954
ELB improved by 0.0864126
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.86
ELB improved by 0.0944198
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.756
ELB improved by 0.103573
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.642
ELB improved by 0.114051
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.516
ELB improved by 0.126059
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.376
ELB improved by 0.13982
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.221
ELB improved by 0.155565
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.047
ELB improved by 0.173501
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.853
ELB improved by 0.193746
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.637
ELB improved by 0.21622
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.397
ELB improved by 0.240456
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.131
ELB improved by 0.265337
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.843
ELB improved by 0.28885
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.534
ELB improved by 0.308069
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.215
ELB improved by 0.319692
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.894
ELB improved by 0.321174
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.582
ELB improved by 0.31195
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.288
ELB improved by 0.293955
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.017
ELB improved by 0.271008
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.769
ELB improved by 0.247447
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.542
ELB improved by 0.22676
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.332
ELB improved by 0.210645
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.133
ELB improved by 0.198677
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.944
ELB improved by 0.188893
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.765
ELB improved by 0.178892
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.599
ELB improved by 0.166226
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.45
ELB improved by 0.149104
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.322
ELB improved by 0.128075
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.216
ELB improved by 0.10551
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.133
ELB improved by 0.0833809
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.07
ELB improved by 0.0629956
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.024
ELB improved by 0.0456569
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.992
ELB improved by 0.032248
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.969
ELB improved by 0.0227056
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.953
ELB improved by 0.016274
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.941
ELB improved by 0.0120461
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.932
ELB improved by 0.00927462
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-838.468
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-584
ELB improved by 254.468
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-520.691
ELB improved by 63.309
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-475.973
ELB improved by 44.7176
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.461
ELB improved by 20.5126
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.925
ELB improved by 9.53576
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.645
ELB improved by 7.27957
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.042
ELB improved by 7.60341
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.891
ELB improved by 8.15127
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.281
ELB improved by 7.60951
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.535
ELB improved by 5.7458
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.917
ELB improved by 3.61828
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.828
ELB improved by 2.08909
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.614
ELB improved by 1.2142
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.864
ELB improved by 0.749489
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.367
ELB improved by 0.497676
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.013
ELB improved by 0.353393
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.747
ELB improved by 0.26648
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.535
ELB improved by 0.212077
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.358
ELB improved by 0.17667
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.205
ELB improved by 0.152565
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.07
ELB improved by 0.135363
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.948
ELB improved by 0.122533
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.835
ELB improved by 0.112586
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.73
ELB improved by 0.10461
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.632
ELB improved by 0.0980205
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.54
ELB improved by 0.0924307
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.452
ELB improved by 0.0875742
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.369
ELB improved by 0.0832638
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.29
ELB improved by 0.0793661
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.214
ELB improved by 0.0757857
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.141
ELB improved by 0.0724545
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.072
ELB improved by 0.0693247
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.006
ELB improved by 0.0663636
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.942
ELB improved by 0.0635496
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.881
ELB improved by 0.0608693
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.823
ELB improved by 0.0583152
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.767
ELB improved by 0.0558836
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.714
ELB improved by 0.0535733
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.662
ELB improved by 0.0513845
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.613
ELB improved by 0.0493181
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.566
ELB improved by 0.0473749
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.52
ELB improved by 0.0455556
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.476
ELB improved by 0.0438605
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.434
ELB improved by 0.0422896
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.393
ELB improved by 0.0408425
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.353
ELB improved by 0.0395192
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.315
ELB improved by 0.0383196
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.278
ELB improved by 0.0372447
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.242
ELB improved by 0.0362965
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.206
ELB improved by 0.0354793
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.171
ELB improved by 0.0348001
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.137
ELB improved by 0.0342705
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.103
ELB improved by 0.0339088
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.069
ELB improved by 0.0337437
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.036
ELB improved by 0.033821
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.001
ELB improved by 0.0342149
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.966
ELB improved by 0.0350505
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.93
ELB improved by 0.036549
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.891
ELB improved by 0.0391271
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.847
ELB improved by 0.0436307
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.795
ELB improved by 0.0519401
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.726
ELB improved by 0.0686753
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.62
ELB improved by 0.106325
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.42
ELB improved by 0.19985
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.993
ELB improved by 0.426951
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.212
ELB improved by 0.781072
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.371
ELB improved by 0.840759
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.768
ELB improved by 0.603402
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.302
ELB improved by 0.466448
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.88
ELB improved by 0.421937
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.475
ELB improved by 0.404194
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.087
ELB improved by 0.388601
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.72
ELB improved by 0.366682
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.384
ELB improved by 0.336095
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.086
ELB improved by 0.29807
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.83
ELB improved by 0.255959
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.616
ELB improved by 0.213701
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.442
ELB improved by 0.174513
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.302
ELB improved by 0.140279
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.19
ELB improved by 0.111613
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.102
ELB improved by 0.0882884
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.032
ELB improved by 0.069671
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.977
ELB improved by 0.0550081
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.933
ELB improved by 0.0435704
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.899
ELB improved by 0.0347079
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.871
ELB improved by 0.027868
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.848
ELB improved by 0.022596
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.83
ELB improved by 0.0185282
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.814
ELB improved by 0.0153801
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.801
ELB improved by 0.0129323
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.79
ELB improved by 0.0110175
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.781
ELB improved by 0.00950884
ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
>
> proc.time()
user system elapsed
2.502 0.177 2.667
graper.Rcheck/graper-Ex.timings
| name | user | system | elapsed | |
| coef.graper | 0.053 | 0.016 | 0.069 | |
| getPIPs | 0.05 | 0.00 | 0.05 | |
| graper | 0.080 | 0.004 | 0.085 | |
| makeExampleData | 0.008 | 0.002 | 0.011 | |
| makeExampleDataWithUnequalGroups | 0.012 | 0.001 | 0.013 | |
| plotELBO | 0.327 | 0.023 | 0.350 | |
| plotGroupPenalties | 1.099 | 0.046 | 1.145 | |
| plotPosterior | 0.718 | 0.007 | 0.724 | |
| predict.graper | 2.045 | 0.027 | 2.071 | |
| print.graper | 0.047 | 0.012 | 0.058 | |