Britta Velten
| Snapshot Date: 2025-11-04 13:45 -0500 (Tue, 04 Nov 2025) |
| git_url: https://git.bioconductor.org/packages/graper |
| git_branch: RELEASE_3_22 |
| git_last_commit: 76fc31b |
| git_last_commit_date: 2025-10-29 10:49:21 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-11-05 12:40 -0500 (Wed, 05 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4902 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4638 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 922/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| graper 1.26.0 (landing page) Britta Velten
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the graper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: graper |
| Version: 1.26.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.26.0.tar.gz |
| StartedAt: 2025-11-04 20:07:11 -0500 (Tue, 04 Nov 2025) |
| EndedAt: 2025-11-04 20:07:39 -0500 (Tue, 04 Nov 2025) |
| EllapsedTime: 28.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: graper.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.26.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/graper.Rcheck’
* using R version 4.5.1 Patched (2025-09-10 r88807)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 16.0.0 (clang-1600.0.26.6)
GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.26.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
* used SDK: ‘MacOSX11.3.1.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/Users/biocbuild/bbs-3.22-bioc/meat/graper.Rcheck/00check.log’
for details.
graper.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL graper ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’ * installing *source* package ‘graper’ ... ** this is package ‘graper’ version ‘1.26.0’ ** using staged installation ** libs using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’ using SDK: ‘MacOSX11.3.1.sdk’ clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fit_graper.cpp -o fit_graper.o clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o graper.so RcppExports.o fit_graper.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R installing to /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/00LOCK-graper/00new/graper/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (graper)
graper.Rcheck/tests/testthat.Rout
R version 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(graper)
>
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-868.008
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-554.52
ELB improved by 313.488
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-494.522
ELB improved by 59.9981
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-463.119
ELB improved by 31.4031
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.134
ELB improved by 12.9848
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.427
ELB improved by 6.7066
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.609
ELB improved by 4.81841
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.396
ELB improved by 4.21295
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.408
ELB improved by 3.98832
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.643
ELB improved by 3.76459
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.269
ELB improved by 3.37416
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.46
ELB improved by 2.80874
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.279
ELB improved by 2.18065
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.658
ELB improved by 1.62185
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.433
ELB improved by 1.2246
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.425
ELB improved by 1.00819
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.5
ELB improved by 0.924644
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.605
ELB improved by 0.895129
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.79
ELB improved by 0.814637
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.13
ELB improved by 0.660834
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.607
ELB improved by 0.522088
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.168
ELB improved by 0.439891
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.766
ELB improved by 0.401581
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.375
ELB improved by 0.390966
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.976
ELB improved by 0.399397
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.553
ELB improved by 0.423054
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.093
ELB improved by 0.45994
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.584
ELB improved by 0.508559
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.016
ELB improved by 0.568475
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.374
ELB improved by 0.641408
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.643
ELB improved by 0.730765
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.804
ELB improved by 0.839419
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.837
ELB improved by 0.966957
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.729
ELB improved by 1.10757
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.48
ELB improved by 1.24992
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.1
ELB improved by 1.37971
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.618
ELB improved by 1.48153
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.084
ELB improved by 1.53404
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.583
ELB improved by 1.50086
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.235
ELB improved by 1.34873
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.136
ELB improved by 1.09862
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.314
ELB improved by 0.821555
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.735
ELB improved by 0.579227
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.337
ELB improved by 0.398458
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.059
ELB improved by 0.277367
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.859
ELB improved by 0.20066
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.706
ELB improved by 0.152536
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.585
ELB improved by 0.121628
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.484
ELB improved by 0.100907
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.397
ELB improved by 0.0862532
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.322
ELB improved by 0.0752712
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.256
ELB improved by 0.0665639
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.196
ELB improved by 0.0593473
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.143
ELB improved by 0.0532298
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.095
ELB improved by 0.0480526
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.051
ELB improved by 0.043759
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.011
ELB improved by 0.0403038
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.973
ELB improved by 0.0376135
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.938
ELB improved by 0.0355859
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.904
ELB improved by 0.0341076
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.871
ELB improved by 0.033071
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.838
ELB improved by 0.0323846
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.806
ELB improved by 0.0319764
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.774
ELB improved by 0.0317921
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.743
ELB improved by 0.0317923
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.711
ELB improved by 0.0319488
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.678
ELB improved by 0.0322418
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.646
ELB improved by 0.0326566
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.613
ELB improved by 0.0331826
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.579
ELB improved by 0.0338114
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.544
ELB improved by 0.0345361
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.509
ELB improved by 0.0353503
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.473
ELB improved by 0.0362476
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.435
ELB improved by 0.0372214
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.397
ELB improved by 0.038264
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.358
ELB improved by 0.0393666
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.317
ELB improved by 0.0405191
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.276
ELB improved by 0.0417092
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.233
ELB improved by 0.0429227
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.188
ELB improved by 0.0441429
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.143
ELB improved by 0.0453505
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.097
ELB improved by 0.0465239
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.049
ELB improved by 0.0476386
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389
ELB improved by 0.048668
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.951
ELB improved by 0.0495841
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.9
ELB improved by 0.0503577
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.849
ELB improved by 0.0509601
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.798
ELB improved by 0.0513641
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.746
ELB improved by 0.0515457
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.695
ELB improved by 0.0514855
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.644
ELB improved by 0.05117
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.593
ELB improved by 0.0505934
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.543
ELB improved by 0.0497574
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.495
ELB improved by 0.0486724
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.447
ELB improved by 0.0473564
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.402
ELB improved by 0.0458345
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.357
ELB improved by 0.0441374
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.315
ELB improved by 0.0422995
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.275
ELB improved by 0.0403574
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.236
ELB improved by 0.0383475
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.2
ELB improved by 0.0363049
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.166
ELB improved by 0.0342614
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.134
ELB improved by 0.0322448
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.103
ELB improved by 0.030278
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.075
ELB improved by 0.0283792
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.048
ELB improved by 0.0265611
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.024
ELB improved by 0.024832
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388
ELB improved by 0.0231963
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.979
ELB improved by 0.0216548
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.959
ELB improved by 0.020206
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.94
ELB improved by 0.0188469
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.922
ELB improved by 0.0175737
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.906
ELB improved by 0.0163824
iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.89
ELB improved by 0.0152694
iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.876
ELB improved by 0.0142316
iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.863
ELB improved by 0.0132669
iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.851
ELB improved by 0.0123735
iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.839
ELB improved by 0.0115506
iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.828
ELB improved by 0.0107978
iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.818
ELB improved by 0.0101153
iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.809
ELB improved by 0.00950386
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-885.367
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-569.868
ELB improved by 315.499
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-507.67
ELB improved by 62.1972
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-469.442
ELB improved by 38.2287
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.661
ELB improved by 15.7804
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.319
ELB improved by 6.34201
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.491
ELB improved by 3.82868
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.361
ELB improved by 3.12948
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.407
ELB improved by 2.95432
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.406
ELB improved by 3.00062
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.267
ELB improved by 3.13947
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.99
ELB improved by 3.27657
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.695
ELB improved by 3.29464
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.612
ELB improved by 3.08324
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.98
ELB improved by 2.6319
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.907
ELB improved by 2.07305
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.331
ELB improved by 1.57643
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.125
ELB improved by 1.20603
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.182
ELB improved by 0.942382
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.422
ELB improved by 0.760192
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.783
ELB improved by 0.639235
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.224
ELB improved by 0.559297
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.72
ELB improved by 0.503895
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.258
ELB improved by 0.462002
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.831
ELB improved by 0.426991
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.435
ELB improved by 0.395389
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.069
ELB improved by 0.365937
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.731
ELB improved by 0.338838
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.415
ELB improved by 0.31516
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.119
ELB improved by 0.296366
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.835
ELB improved by 0.283712
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.558
ELB improved by 0.277139
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.284
ELB improved by 0.274005
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.014
ELB improved by 0.27048
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.746
ELB improved by 0.267332
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.474
ELB improved by 0.272281
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.184
ELB improved by 0.290588
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.875
ELB improved by 0.308369
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.577
ELB improved by 0.298051
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.315
ELB improved by 0.262122
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.087
ELB improved by 0.227873
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.88
ELB improved by 0.207402
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.681
ELB improved by 0.198619
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.484
ELB improved by 0.197117
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.284
ELB improved by 0.199706
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.08
ELB improved by 0.204311
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.871
ELB improved by 0.209366
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.657
ELB improved by 0.213386
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.443
ELB improved by 0.214721
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.231
ELB improved by 0.211559
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.029
ELB improved by 0.202384
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.842
ELB improved by 0.18702
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.674
ELB improved by 0.167546
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.526
ELB improved by 0.147897
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.394
ELB improved by 0.132322
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.269
ELB improved by 0.124445
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.142
ELB improved by 0.127611
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.996
ELB improved by 0.145349
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.817
ELB improved by 0.179533
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.593
ELB improved by 0.224206
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.332
ELB improved by 0.260839
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.061
ELB improved by 0.270704
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.807
ELB improved by 0.254221
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.583
ELB improved by 0.224248
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.392
ELB improved by 0.190284
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.235
ELB improved by 0.157216
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.107
ELB improved by 0.12773
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.005
ELB improved by 0.102895
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.922
ELB improved by 0.0826782
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.855
ELB improved by 0.0665356
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.802
ELB improved by 0.0537815
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.758
ELB improved by 0.0437497
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.722
ELB improved by 0.0358565
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.692
ELB improved by 0.0296194
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.668
ELB improved by 0.0246569
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.647
ELB improved by 0.0206757
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.63
ELB improved by 0.017454
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.615
ELB improved by 0.0148258
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.602
ELB improved by 0.0126662
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.591
ELB improved by 0.010881
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.582
ELB improved by 0.00939795
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-873.49
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-568.162
ELB improved by 305.328
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-503.416
ELB improved by 64.7462
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.409
ELB improved by 46.0065
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.023
ELB improved by 21.3864
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.881
ELB improved by 9.1417
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.611
ELB improved by 5.26969
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.231
ELB improved by 3.38006
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.888
ELB improved by 2.34356
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.11
ELB improved by 1.77726
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.652
ELB improved by 1.45843
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.389
ELB improved by 1.26306
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.262
ELB improved by 1.12645
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.244
ELB improved by 1.01852
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.317
ELB improved by 0.927142
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.469
ELB improved by 0.848012
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.689
ELB improved by 0.77936
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.97
ELB improved by 0.719632
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.303
ELB improved by 0.666788
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.685
ELB improved by 0.618373
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.113
ELB improved by 0.571943
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.587
ELB improved by 0.525565
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.109
ELB improved by 0.47822
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.679
ELB improved by 0.429925
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.297
ELB improved by 0.381549
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.963
ELB improved by 0.334404
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.673
ELB improved by 0.289831
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.424
ELB improved by 0.248926
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.212
ELB improved by 0.212451
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.031
ELB improved by 0.180822
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.877
ELB improved by 0.154132
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.745
ELB improved by 0.132191
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.63
ELB improved by 0.114581
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.529
ELB improved by 0.100749
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.439
ELB improved by 0.0900906
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.357
ELB improved by 0.0820192
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.281
ELB improved by 0.0760115
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.21
ELB improved by 0.0716243
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.141
ELB improved by 0.0684972
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.075
ELB improved by 0.0663445
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.01
ELB improved by 0.0649439
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.946
ELB improved by 0.0641244
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.882
ELB improved by 0.0637546
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.818
ELB improved by 0.0637344
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.754
ELB improved by 0.0639873
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.69
ELB improved by 0.0644555
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.625
ELB improved by 0.0650967
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.559
ELB improved by 0.065882
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.492
ELB improved by 0.066796
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.424
ELB improved by 0.0678377
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.355
ELB improved by 0.0690224
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.285
ELB improved by 0.0703865
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.213
ELB improved by 0.0719924
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.139
ELB improved by 0.0739372
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.062
ELB improved by 0.0763647
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.983
ELB improved by 0.0794818
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.899
ELB improved by 0.0835835
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.81
ELB improved by 0.0890854
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.714
ELB improved by 0.0965658
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.607
ELB improved by 0.106802
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.486
ELB improved by 0.120763
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.347
ELB improved by 0.139474
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.183
ELB improved by 0.163623
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.99
ELB improved by 0.192956
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.764
ELB improved by 0.225973
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.503
ELB improved by 0.260736
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.207
ELB improved by 0.296538
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.872
ELB improved by 0.334669
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.495
ELB improved by 0.377594
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.067
ELB improved by 0.42747
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.583
ELB improved by 0.484163
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.041
ELB improved by 0.542224
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.451
ELB improved by 0.589534
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.837
ELB improved by 0.614144
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.222
ELB improved by 0.614656
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.623
ELB improved by 0.599081
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.048
ELB improved by 0.575798
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.5
ELB improved by 0.547123
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.993
ELB improved by 0.507158
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.545
ELB improved by 0.448141
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.174
ELB improved by 0.371595
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.883
ELB improved by 0.290213
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.665
ELB improved by 0.218122
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.503
ELB improved by 0.161981
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.382
ELB improved by 0.12113
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.29
ELB improved by 0.0920435
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.219
ELB improved by 0.0712598
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.163
ELB improved by 0.056204
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.117
ELB improved by 0.0451166
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.081
ELB improved by 0.0368163
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.05
ELB improved by 0.0305047
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.025
ELB improved by 0.0256352
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.003
ELB improved by 0.0218272
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.984
ELB improved by 0.0188114
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.967
ELB improved by 0.0163945
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.953
ELB improved by 0.0144354
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.94
ELB improved by 0.0128297
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.929
ELB improved by 0.0114993
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.918
ELB improved by 0.0103847
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.909
ELB improved by 0.00944051
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-867.99
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-572.156
ELB improved by 295.833
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-511.971
ELB improved by 60.1855
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-472.676
ELB improved by 39.2949
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-456.125
ELB improved by 16.551
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.656
ELB improved by 6.46902
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.403
ELB improved by 3.2528
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.263
ELB improved by 2.1404
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.583
ELB improved by 1.67945
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.118
ELB improved by 1.46531
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.773
ELB improved by 1.34483
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.516
ELB improved by 1.25732
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.337
ELB improved by 1.17879
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.237
ELB improved by 1.10024
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.218
ELB improved by 1.01932
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.281
ELB improved by 0.936639
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.427
ELB improved by 0.854004
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.653
ELB improved by 0.773447
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.957
ELB improved by 0.696793
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.331
ELB improved by 0.625427
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.771
ELB improved by 0.560214
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.27
ELB improved by 0.50151
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.82
ELB improved by 0.449242
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.417
ELB improved by 0.403032
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.055
ELB improved by 0.3623
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.729
ELB improved by 0.326372
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.434
ELB improved by 0.294553
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.168
ELB improved by 0.266176
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.927
ELB improved by 0.240642
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.71
ELB improved by 0.217439
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.514
ELB improved by 0.196157
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.337
ELB improved by 0.176493
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.179
ELB improved by 0.158244
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.038
ELB improved by 0.141299
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.912
ELB improved by 0.125617
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.801
ELB improved by 0.111203
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.703
ELB improved by 0.0980792
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.616
ELB improved by 0.0862638
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.541
ELB improved by 0.0757532
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.474
ELB improved by 0.0665122
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.416
ELB improved by 0.0584737
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.364
ELB improved by 0.0515431
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.319
ELB improved by 0.0456076
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.278
ELB improved by 0.0405454
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.242
ELB improved by 0.0362353
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.209
ELB improved by 0.0325624
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.18
ELB improved by 0.0294235
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.153
ELB improved by 0.0267283
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.129
ELB improved by 0.0244002
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.106
ELB improved by 0.0223757
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.086
ELB improved by 0.0206023
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.067
ELB improved by 0.0190379
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.049
ELB improved by 0.0176481
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.033
ELB improved by 0.0164057
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.017
ELB improved by 0.0152883
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.003
ELB improved by 0.0142783
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.99
ELB improved by 0.013361
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.977
ELB improved by 0.0125248
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.965
ELB improved by 0.0117596
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.954
ELB improved by 0.0110575
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.944
ELB improved by 0.0104116
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.934
ELB improved by 0.00981603
ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
>
> proc.time()
user system elapsed
1.065 0.090 1.187
graper.Rcheck/graper-Ex.timings
| name | user | system | elapsed | |
| coef.graper | 0.029 | 0.011 | 0.045 | |
| getPIPs | 0.027 | 0.007 | 0.039 | |
| graper | 0.049 | 0.008 | 0.063 | |
| makeExampleData | 0.004 | 0.001 | 0.004 | |
| makeExampleDataWithUnequalGroups | 0.005 | 0.000 | 0.005 | |
| plotELBO | 0.127 | 0.009 | 0.142 | |
| plotGroupPenalties | 0.434 | 0.013 | 0.461 | |
| plotPosterior | 0.221 | 0.010 | 0.249 | |
| predict.graper | 1.035 | 0.042 | 1.213 | |
| print.graper | 0.027 | 0.006 | 0.036 | |