| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-11-06 12:01 -0500 (Thu, 06 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4902 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4638 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 922/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| graper 1.26.0 (landing page) Britta Velten
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
|
To the developers/maintainers of the graper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: graper |
| Version: 1.26.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.26.0.tar.gz |
| StartedAt: 2025-11-05 20:37:03 -0500 (Wed, 05 Nov 2025) |
| EndedAt: 2025-11-05 20:37:30 -0500 (Wed, 05 Nov 2025) |
| EllapsedTime: 27.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: graper.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.26.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/graper.Rcheck’
* using R version 4.5.1 Patched (2025-09-10 r88807)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 16.0.0 (clang-1600.0.26.6)
GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.26.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
* used SDK: ‘MacOSX11.3.1.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/Users/biocbuild/bbs-3.22-bioc/meat/graper.Rcheck/00check.log’
for details.
graper.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL graper ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’ * installing *source* package ‘graper’ ... ** this is package ‘graper’ version ‘1.26.0’ ** using staged installation ** libs using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’ using SDK: ‘MacOSX11.3.1.sdk’ clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fit_graper.cpp -o fit_graper.o clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o graper.so RcppExports.o fit_graper.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R installing to /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/00LOCK-graper/00new/graper/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (graper)
graper.Rcheck/tests/testthat.Rout
R version 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(graper)
>
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-882.953
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-571.909
ELB improved by 311.044
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-509.336
ELB improved by 62.5728
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-470.554
ELB improved by 38.7822
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.459
ELB improved by 17.0945
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.201
ELB improved by 7.25833
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.197
ELB improved by 4.00423
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.562
ELB improved by 2.63531
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.507
ELB improved by 2.05475
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.647
ELB improved by 1.86002
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.783
ELB improved by 1.86371
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.811
ELB improved by 1.97191
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.689
ELB improved by 2.12255
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.435
ELB improved by 2.25371
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.14
ELB improved by 2.29515
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.953
ELB improved by 2.18667
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.036
ELB improved by 1.91686
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.49
ELB improved by 1.5458
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.32
ELB improved by 1.17089
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.457
ELB improved by 0.862813
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.816
ELB improved by 0.640246
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.327
ELB improved by 0.489789
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.936
ELB improved by 0.390761
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.61
ELB improved by 0.326057
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.326
ELB improved by 0.283977
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.069
ELB improved by 0.25731
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.826
ELB improved by 0.242137
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.589
ELB improved by 0.237088
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.346
ELB improved by 0.242887
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.086
ELB improved by 0.260557
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.802
ELB improved by 0.284318
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.508
ELB improved by 0.29339
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.235
ELB improved by 0.272749
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.995
ELB improved by 0.240641
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.778
ELB improved by 0.217047
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.575
ELB improved by 0.203049
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.38
ELB improved by 0.194326
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.192
ELB improved by 0.188212
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.009
ELB improved by 0.183574
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.829
ELB improved by 0.179961
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.651
ELB improved by 0.177239
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.476
ELB improved by 0.17551
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.301
ELB improved by 0.175132
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.124
ELB improved by 0.176728
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.943
ELB improved by 0.181216
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.753
ELB improved by 0.189886
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.549
ELB improved by 0.204373
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.323
ELB improved by 0.225955
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.069
ELB improved by 0.253128
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.791
ELB improved by 0.278052
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.502
ELB improved by 0.288978
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.22
ELB improved by 0.28218
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.955
ELB improved by 0.265198
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.709
ELB improved by 0.245958
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.481
ELB improved by 0.227634
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.27
ELB improved by 0.211018
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.074
ELB improved by 0.196595
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.889
ELB improved by 0.185036
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.712
ELB improved by 0.177053
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.539
ELB improved by 0.17281
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.368
ELB improved by 0.170869
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.2
ELB improved by 0.167711
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.04
ELB improved by 0.160106
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.891
ELB improved by 0.149003
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.752
ELB improved by 0.138863
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.62
ELB improved by 0.132517
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.492
ELB improved by 0.127883
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.372
ELB improved by 0.119784
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.266
ELB improved by 0.106034
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.176
ELB improved by 0.0906268
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.096
ELB improved by 0.0793752
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.02
ELB improved by 0.075827
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.938
ELB improved by 0.0824065
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.835
ELB improved by 0.103169
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.691
ELB improved by 0.143608
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.491
ELB improved by 0.199785
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.254
ELB improved by 0.237246
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.038
ELB improved by 0.216624
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.88
ELB improved by 0.157931
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.776
ELB improved by 0.1034
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.709
ELB improved by 0.0669159
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.664
ELB improved by 0.0454388
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.63
ELB improved by 0.0335371
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.603
ELB improved by 0.0271012
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.58
ELB improved by 0.0236214
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.558
ELB improved by 0.021776
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.537
ELB improved by 0.0209613
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.516
ELB improved by 0.0209585
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.494
ELB improved by 0.0217472
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.471
ELB improved by 0.0234085
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.445
ELB improved by 0.0260577
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.415
ELB improved by 0.0297515
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.381
ELB improved by 0.0343228
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.341
ELB improved by 0.0391512
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.298
ELB improved by 0.0430494
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.254
ELB improved by 0.044645
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.21
ELB improved by 0.043336
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.17
ELB improved by 0.039931
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.134
ELB improved by 0.0360467
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.101
ELB improved by 0.0329568
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.07
ELB improved by 0.0311569
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.04
ELB improved by 0.030641
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.008
ELB improved by 0.0312155
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.976
ELB improved by 0.0325499
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.942
ELB improved by 0.0340446
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.907
ELB improved by 0.034763
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.873
ELB improved by 0.0337314
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.843
ELB improved by 0.0305993
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.817
ELB improved by 0.0260308
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.795
ELB improved by 0.0212535
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.778
ELB improved by 0.0172325
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.764
ELB improved by 0.0143165
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.752
ELB improved by 0.0124194
iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.74
ELB improved by 0.0113063
iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.729
ELB improved by 0.0107499
iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.719
ELB improved by 0.0105733
iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.708
ELB improved by 0.0106445
iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.697
ELB improved by 0.0108621
iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.686
ELB improved by 0.0111459
iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.675
ELB improved by 0.0114337
iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.663
ELB improved by 0.0116852
iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.651
ELB improved by 0.0118885
iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.639
ELB improved by 0.0120661
iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.627
ELB improved by 0.0122803
iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.614
ELB improved by 0.0126383
iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.601
ELB improved by 0.0133049
iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.586
ELB improved by 0.0145348
iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.57
ELB improved by 0.0167493
iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.549
ELB improved by 0.0206956
iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.521
ELB improved by 0.0277586
iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.481
ELB improved by 0.0404591
iteration 132
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.418
ELB improved by 0.062761
iteration 133
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.32
ELB improved by 0.0980992
iteration 134
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.179
ELB improved by 0.141066
iteration 135
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.01
ELB improved by 0.168425
iteration 136
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.855
ELB improved by 0.155616
iteration 137
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.744
ELB improved by 0.110584
iteration 138
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.68
ELB improved by 0.0646515
iteration 139
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.645
ELB improved by 0.0348119
iteration 140
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.625
ELB improved by 0.0192992
iteration 141
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.613
ELB improved by 0.0119325
iteration 142
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.605
ELB improved by 0.00846622
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-839.389
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-557.845
ELB improved by 281.544
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-500.651
ELB improved by 57.1936
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-468.798
ELB improved by 31.8529
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-456.81
ELB improved by 11.9881
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.99
ELB improved by 4.82003
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.84
ELB improved by 3.15002
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.122
ELB improved by 2.71759
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.524
ELB improved by 2.59864
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.005
ELB improved by 2.51852
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.664
ELB improved by 2.34161
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.637
ELB improved by 2.02697
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.016
ELB improved by 1.62019
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.807
ELB improved by 1.20969
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.94
ELB improved by 0.866676
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.325
ELB improved by 0.615284
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.881
ELB improved by 0.444173
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.55
ELB improved by 0.331015
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.293
ELB improved by 0.256252
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.087
ELB improved by 0.206124
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.916
ELB improved by 0.171679
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.768
ELB improved by 0.147268
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.639
ELB improved by 0.12938
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.523
ELB improved by 0.115838
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.418
ELB improved by 0.105284
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.321
ELB improved by 0.0968506
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.231
ELB improved by 0.0899736
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.147
ELB improved by 0.0842748
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.067
ELB improved by 0.0794953
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.992
ELB improved by 0.0754558
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.92
ELB improved by 0.0720314
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.851
ELB improved by 0.0691354
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.784
ELB improved by 0.0667091
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.719
ELB improved by 0.0647139
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.656
ELB improved by 0.0631267
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.594
ELB improved by 0.0619356
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.533
ELB improved by 0.0611376
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.472
ELB improved by 0.0607361
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.411
ELB improved by 0.0607388
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.35
ELB improved by 0.0611554
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.288
ELB improved by 0.0619937
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.225
ELB improved by 0.0632556
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.16
ELB improved by 0.0649318
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.093
ELB improved by 0.0669956
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.024
ELB improved by 0.0693987
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.952
ELB improved by 0.0720708
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.877
ELB improved by 0.0749247
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.799
ELB improved by 0.0778687
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.718
ELB improved by 0.0808241
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.634
ELB improved by 0.0837415
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.548
ELB improved by 0.0866109
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.458
ELB improved by 0.0894617
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.366
ELB improved by 0.0923564
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.27
ELB improved by 0.0953841
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.172
ELB improved by 0.0986602
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.069
ELB improved by 0.102335
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.963
ELB improved by 0.106611
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.851
ELB improved by 0.111772
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.733
ELB improved by 0.118222
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.606
ELB improved by 0.126541
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.469
ELB improved by 0.137562
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.316
ELB improved by 0.152473
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.143
ELB improved by 0.1729
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.943
ELB improved by 0.20082
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.705
ELB improved by 0.237945
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.421
ELB improved by 0.284111
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.085
ELB improved by 0.335342
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.7
ELB improved by 0.384768
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.273
ELB improved by 0.427701
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.809
ELB improved by 0.46414
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.314
ELB improved by 0.494869
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.796
ELB improved by 0.517486
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.27
ELB improved by 0.526504
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.752
ELB improved by 0.517273
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.261
ELB improved by 0.491239
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.805
ELB improved by 0.456451
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.383
ELB improved by 0.421667
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.993
ELB improved by 0.390417
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.633
ELB improved by 0.360074
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.306
ELB improved by 0.326116
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.019
ELB improved by 0.28793
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.768
ELB improved by 0.250163
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.549
ELB improved by 0.219378
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.348
ELB improved by 0.201303
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.148
ELB improved by 0.199922
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.934
ELB improved by 0.213681
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.706
ELB improved by 0.227797
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.482
ELB improved by 0.224752
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.266
ELB improved by 0.215928
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.036
ELB improved by 0.229249
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.769
ELB improved by 0.267682
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.472
ELB improved by 0.296963
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.19
ELB improved by 0.282039
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.958
ELB improved by 0.231297
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.786
ELB improved by 0.172496
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.664
ELB improved by 0.122294
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.578
ELB improved by 0.0855496
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.517
ELB improved by 0.0608794
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.472
ELB improved by 0.0450153
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.437
ELB improved by 0.0349292
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.409
ELB improved by 0.0284258
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.385
ELB improved by 0.0240952
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.364
ELB improved by 0.0210889
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.345
ELB improved by 0.0189113
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.327
ELB improved by 0.0172754
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.311
ELB improved by 0.0160142
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.296
ELB improved by 0.0150296
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.282
ELB improved by 0.014264
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.268
ELB improved by 0.0136846
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.255
ELB improved by 0.0132759
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.242
ELB improved by 0.0130361
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.229
ELB improved by 0.0129776
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.216
ELB improved by 0.0131307
iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.202
ELB improved by 0.0135525
iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.188
ELB improved by 0.0143438
iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.172
ELB improved by 0.0156805
iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.155
ELB improved by 0.0178736
iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.133
ELB improved by 0.0214816
iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.106
ELB improved by 0.0275167
iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.068
ELB improved by 0.0377781
iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.013
ELB improved by 0.0551719
iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.93
ELB improved by 0.0830783
iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.808
ELB improved by 0.121081
iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.652
ELB improved by 0.156283
iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.487
ELB improved by 0.165357
iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.346
ELB improved by 0.141303
iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.242
ELB improved by 0.103083
iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.173
ELB improved by 0.0693807
iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.127
ELB improved by 0.0456634
iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.097
ELB improved by 0.0304219
iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.076
ELB improved by 0.0209474
iteration 132
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.061
ELB improved by 0.0151049
iteration 133
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.049
ELB improved by 0.011483
iteration 134
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.04
ELB improved by 0.00920472
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-882.517
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-563.087
ELB improved by 319.43
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-507.511
ELB improved by 55.5763
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-477.068
ELB improved by 30.4428
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-464.134
ELB improved by 12.9339
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-458.855
ELB improved by 5.27876
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.911
ELB improved by 2.94387
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.74
ELB improved by 2.17102
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.875
ELB improved by 1.86522
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.17
ELB improved by 1.70492
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.587
ELB improved by 1.58325
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.124
ELB improved by 1.46251
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.797
ELB improved by 1.32759
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.622
ELB improved by 1.17506
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.61
ELB improved by 1.01147
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.76
ELB improved by 0.850148
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.055
ELB improved by 0.704718
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.472
ELB improved by 0.583348
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.985
ELB improved by 0.487436
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.571
ELB improved by 0.41401
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.212
ELB improved by 0.358723
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.894
ELB improved by 0.317593
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.607
ELB improved by 0.287498
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.341
ELB improved by 0.266136
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.089
ELB improved by 0.251903
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.845
ELB improved by 0.243828
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.603
ELB improved by 0.24152
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.358
ELB improved by 0.245132
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.103
ELB improved by 0.255337
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.83
ELB improved by 0.273346
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.529
ELB improved by 0.300966
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.188
ELB improved by 0.340713
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.792
ELB improved by 0.395964
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.321
ELB improved by 0.471147
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.749
ELB improved by 0.57192
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.044
ELB improved by 0.70522
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.165
ELB improved by 0.878893
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.065
ELB improved by 1.10017
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.693
ELB improved by 1.37166
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.01
ELB improved by 1.68286
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.015
ELB improved by 1.99534
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.787
ELB improved by 2.22731
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.521
ELB improved by 2.26597
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.48
ELB improved by 2.04124
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.867
ELB improved by 1.6134
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.721
ELB improved by 1.14569
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.951
ELB improved by 0.770143
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.432
ELB improved by 0.518613
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.069
ELB improved by 0.363102
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.801
ELB improved by 0.2684
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.59
ELB improved by 0.21065
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.413
ELB improved by 0.176798
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.252
ELB improved by 0.160937
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.09
ELB improved by 0.161958
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.909
ELB improved by 0.181635
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.689
ELB improved by 0.219699
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.423
ELB improved by 0.266093
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.111
ELB improved by 0.311552
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.737
ELB improved by 0.374349
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.288
ELB improved by 0.448889
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.84
ELB improved by 0.448639
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.476
ELB improved by 0.363323
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.216
ELB improved by 0.2606
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.035
ELB improved by 0.180638
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.901
ELB improved by 0.133978
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.794
ELB improved by 0.107071
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.707
ELB improved by 0.0872167
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.636
ELB improved by 0.0705208
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.579
ELB improved by 0.0568538
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.533
ELB improved by 0.046231
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.495
ELB improved by 0.0382329
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.463
ELB improved by 0.0322719
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.435
ELB improved by 0.027798
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.41
ELB improved by 0.0243785
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.389
ELB improved by 0.0217041
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.369
ELB improved by 0.0195661
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.351
ELB improved by 0.0178261
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.335
ELB improved by 0.0163924
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.32
ELB improved by 0.0152027
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.306
ELB improved by 0.0142137
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.292
ELB improved by 0.013394
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.279
ELB improved by 0.01272
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.267
ELB improved by 0.0121736
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.256
ELB improved by 0.0117401
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.244
ELB improved by 0.0114073
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.233
ELB improved by 0.011164
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.222
ELB improved by 0.0109994
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.211
ELB improved by 0.0109026
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.2
ELB improved by 0.0108616
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.189
ELB improved by 0.0108639
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.178
ELB improved by 0.0108963
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.168
ELB improved by 0.010946
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.157
ELB improved by 0.0110027
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.145
ELB improved by 0.0110597
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.134
ELB improved by 0.0111157
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.123
ELB improved by 0.0111759
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.112
ELB improved by 0.0112513
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.101
ELB improved by 0.0113575
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.089
ELB improved by 0.0115125
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.077
ELB improved by 0.0117339
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.065
ELB improved by 0.0120356
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.053
ELB improved by 0.0124236
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.04
ELB improved by 0.0128919
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.027
ELB improved by 0.0134169
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.013
ELB improved by 0.013952
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.998
ELB improved by 0.0144259
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.983
ELB improved by 0.0147475
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.969
ELB improved by 0.0148217
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.954
ELB improved by 0.0145749
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.94
ELB improved by 0.0139819
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.927
ELB improved by 0.0130793
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.915
ELB improved by 0.0119574
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.904
ELB improved by 0.0107328
iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.895
ELB improved by 0.0095157
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-872.732
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-560.099
ELB improved by 312.633
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-501.969
ELB improved by 58.1299
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-473.289
ELB improved by 28.6799
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.348
ELB improved by 11.9407
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.185
ELB improved by 6.16303
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.841
ELB improved by 4.34385
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.025
ELB improved by 3.81649
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.344
ELB improved by 3.68109
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.657
ELB improved by 3.68676
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.961
ELB improved by 3.69642
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.379
ELB improved by 3.58134
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.119
ELB improved by 3.26057
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.407
ELB improved by 2.71209
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.391
ELB improved by 2.0152
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.987
ELB improved by 1.40484
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.973
ELB improved by 1.01332
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.179
ELB improved by 0.794779
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.505
ELB improved by 0.673618
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.904
ELB improved by 0.601378
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.351
ELB improved by 0.552627
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.836
ELB improved by 0.515089
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.352
ELB improved by 0.483697
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.895
ELB improved by 0.457338
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.458
ELB improved by 0.437003
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.033
ELB improved by 0.424596
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.612
ELB improved by 0.421585
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.185
ELB improved by 0.426613
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.752
ELB improved by 0.433496
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.316
ELB improved by 0.435266
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.884
ELB improved by 0.432329
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.453
ELB improved by 0.430874
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.019
ELB improved by 0.434447
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.577
ELB improved by 0.441819
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.127
ELB improved by 0.44996
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.67
ELB improved by 0.457041
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.206
ELB improved by 0.463848
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.732
ELB improved by 0.474395
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.234
ELB improved by 0.497091
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.695
ELB improved by 0.539761
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.115
ELB improved by 0.579213
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.567
ELB improved by 0.548789
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.125
ELB improved by 0.441886
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.799
ELB improved by 0.326264
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.56
ELB improved by 0.238082
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.382
ELB improved by 0.178044
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.243
ELB improved by 0.139112
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.129
ELB improved by 0.114644
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.029
ELB improved by 0.0996726
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.938
ELB improved by 0.0909344
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.852
ELB improved by 0.0864459
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.767
ELB improved by 0.0849793
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.681
ELB improved by 0.0856016
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.594
ELB improved by 0.087321
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.505
ELB improved by 0.0889496
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.415
ELB improved by 0.0893248
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.328
ELB improved by 0.0877497
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.244
ELB improved by 0.0841365
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.165
ELB improved by 0.0787129
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.093
ELB improved by 0.0718722
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.029
ELB improved by 0.0643455
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.972
ELB improved by 0.0570722
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.921
ELB improved by 0.0506727
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.876
ELB improved by 0.0451796
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.835
ELB improved by 0.0402592
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.8
ELB improved by 0.0355721
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.769
ELB improved by 0.0309821
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.742
ELB improved by 0.0265678
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.72
ELB improved by 0.0225139
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.701
ELB improved by 0.0189855
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.685
ELB improved by 0.0160572
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.671
ELB improved by 0.0137104
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.659
ELB improved by 0.0118667
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.649
ELB improved by 0.0104266
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.639
ELB improved by 0.00929465
ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
>
> proc.time()
user system elapsed
1.036 0.077 1.110
graper.Rcheck/graper-Ex.timings
| name | user | system | elapsed | |
| coef.graper | 0.029 | 0.005 | 0.034 | |
| getPIPs | 0.027 | 0.004 | 0.031 | |
| graper | 0.051 | 0.008 | 0.058 | |
| makeExampleData | 0.004 | 0.001 | 0.004 | |
| makeExampleDataWithUnequalGroups | 0.004 | 0.000 | 0.005 | |
| plotELBO | 0.123 | 0.007 | 0.130 | |
| plotGroupPenalties | 0.431 | 0.010 | 0.446 | |
| plotPosterior | 0.223 | 0.008 | 0.231 | |
| predict.graper | 1.027 | 0.029 | 1.058 | |
| print.graper | 0.026 | 0.004 | 0.031 | |