Angelo Velle
| Snapshot Date: 2025-01-02 13:00 -0500 (Thu, 02 Jan 2025) |
| git_url: https://git.bioconductor.org/packages/gINTomics |
| git_branch: RELEASE_3_20 |
| git_last_commit: eb9ddba |
| git_last_commit_date: 2024-10-29 11:30:48 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-01-09 12:08 -0500 (Thu, 09 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4358 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 865/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| gINTomics 1.2.0 (landing page) Angelo Velle
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the gINTomics package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gINTomics.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: gINTomics |
| Version: 1.2.0 |
| Command: rm -rf gINTomics.buildbin-libdir && mkdir gINTomics.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh gINTomics_1.2.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R gINTomics.buildbin-libdir |
| StartedAt: 2025-01-03 13:33:27 -0500 (Fri, 03 Jan 2025) |
| EndedAt: 2025-01-03 13:37:42 -0500 (Fri, 03 Jan 2025) |
| EllapsedTime: 255.6 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: gINTomics_1.2.0.tgz |
| PackageFileSize: 3.847 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf gINTomics.buildbin-libdir && mkdir gINTomics.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh gINTomics_1.2.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R gINTomics.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=gINTomics.buildbin-libdir gINTomics_1.2.0.tar.gz' >>>>>>> * installing *source* package ‘gINTomics’ ... ** using staged installation ** R [2025-01-03 13:34:16] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2025-01-03 13:34:16] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-03 13:34:16] [INFO] [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`. [2025-01-03 13:34:16] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2025-01-03 13:34:16] [TRACE] [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`. [2025-01-03 13:34:16] [TRACE] [OmnipathR] Contains 6 files. [2025-01-03 13:34:16] [TRACE] [OmnipathR] Cache is locked: FALSE. [2025-01-03 13:34:16] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2025-01-03 13:34:16] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-03 13:34:16] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`. [2025-01-03 13:34:17] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2025-01-03 13:34:17] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2025-01-03 13:34:17] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-03 13:34:17] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2025-01-03 13:34:17] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-03 13:34:17] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2025-01-03 13:34:17] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-03 13:34:17] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2025-01-03 13:34:17] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-03 13:34:17] [TRACE] [OmnipathR] Cache locked: FALSE ** data ** inst ** byte-compile and prepare package for lazy loading [2025-01-03 13:35:16] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2025-01-03 13:35:16] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-03 13:35:16] [INFO] [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`. [2025-01-03 13:35:16] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2025-01-03 13:35:16] [TRACE] [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`. [2025-01-03 13:35:16] [TRACE] [OmnipathR] Contains 1 files. [2025-01-03 13:35:16] [TRACE] [OmnipathR] Cache is locked: FALSE. [2025-01-03 13:35:16] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2025-01-03 13:35:16] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-03 13:35:16] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`. [2025-01-03 13:35:16] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2025-01-03 13:35:16] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2025-01-03 13:35:16] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-03 13:35:16] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2025-01-03 13:35:16] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-03 13:35:16] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2025-01-03 13:35:16] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-03 13:35:16] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2025-01-03 13:35:16] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-03 13:35:16] [TRACE] [OmnipathR] Cache locked: FALSE ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location [2025-01-03 13:36:31] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2025-01-03 13:36:31] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-03 13:36:31] [INFO] [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`. [2025-01-03 13:36:31] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2025-01-03 13:36:31] [TRACE] [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`. [2025-01-03 13:36:31] [TRACE] [OmnipathR] Contains 1 files. [2025-01-03 13:36:31] [TRACE] [OmnipathR] Cache is locked: FALSE. [2025-01-03 13:36:31] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2025-01-03 13:36:31] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-03 13:36:31] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`. [2025-01-03 13:36:31] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2025-01-03 13:36:31] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2025-01-03 13:36:31] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-03 13:36:31] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2025-01-03 13:36:31] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-03 13:36:31] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2025-01-03 13:36:31] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-03 13:36:31] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2025-01-03 13:36:31] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-03 13:36:31] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package can be loaded from final location [2025-01-03 13:37:27] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2025-01-03 13:37:27] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-03 13:37:27] [INFO] [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`. [2025-01-03 13:37:27] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2025-01-03 13:37:27] [TRACE] [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`. [2025-01-03 13:37:27] [TRACE] [OmnipathR] Contains 1 files. [2025-01-03 13:37:27] [TRACE] [OmnipathR] Cache is locked: FALSE. [2025-01-03 13:37:27] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2025-01-03 13:37:27] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-03 13:37:27] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`. [2025-01-03 13:37:27] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2025-01-03 13:37:27] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2025-01-03 13:37:27] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-03 13:37:27] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2025-01-03 13:37:27] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-03 13:37:27] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2025-01-03 13:37:27] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-03 13:37:27] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2025-01-03 13:37:27] [TRACE] [OmnipathR] JSON validation successful: TRUE [2025-01-03 13:37:27] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package keeps a record of temporary installation path * DONE (gINTomics)