Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-12-23 12:07 -0500 (Mon, 23 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 865/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
gINTomics 1.2.0 (landing page) Angelo Velle
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the gINTomics package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gINTomics.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: gINTomics |
Version: 1.2.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL gINTomics |
StartedAt: 2024-12-19 17:20:08 -0500 (Thu, 19 Dec 2024) |
EndedAt: 2024-12-19 17:21:33 -0500 (Thu, 19 Dec 2024) |
EllapsedTime: 85.5 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL gINTomics ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘gINTomics’ ... ** using staged installation ** R [2024-12-19 17:20:23] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2024-12-19 17:20:23] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 17:20:23] [INFO] [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-12-19 17:20:23] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2024-12-19 17:20:23] [TRACE] [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-12-19 17:20:23] [TRACE] [OmnipathR] Contains 1 files. [2024-12-19 17:20:23] [TRACE] [OmnipathR] Cache is locked: FALSE. [2024-12-19 17:20:23] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2024-12-19 17:20:23] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 17:20:23] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-12-19 17:20:23] [TRACE] [OmnipathR] Pandoc version: `3.1.2`. [2024-12-19 17:20:23] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2024-12-19 17:20:23] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 17:20:23] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2024-12-19 17:20:23] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 17:20:23] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2024-12-19 17:20:23] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 17:20:23] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2024-12-19 17:20:23] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 17:20:23] [TRACE] [OmnipathR] Cache locked: FALSE ** data ** inst ** byte-compile and prepare package for lazy loading [2024-12-19 17:20:43] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2024-12-19 17:20:43] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 17:20:43] [INFO] [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-12-19 17:20:43] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2024-12-19 17:20:43] [TRACE] [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-12-19 17:20:43] [TRACE] [OmnipathR] Contains 1 files. [2024-12-19 17:20:43] [TRACE] [OmnipathR] Cache is locked: FALSE. [2024-12-19 17:20:43] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2024-12-19 17:20:43] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 17:20:43] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-12-19 17:20:43] [TRACE] [OmnipathR] Pandoc version: `3.1.2`. [2024-12-19 17:20:43] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2024-12-19 17:20:43] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 17:20:43] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2024-12-19 17:20:43] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 17:20:43] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2024-12-19 17:20:43] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 17:20:43] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2024-12-19 17:20:43] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 17:20:43] [TRACE] [OmnipathR] Cache locked: FALSE ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location [2024-12-19 17:21:08] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2024-12-19 17:21:08] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 17:21:08] [INFO] [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-12-19 17:21:08] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2024-12-19 17:21:08] [TRACE] [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-12-19 17:21:08] [TRACE] [OmnipathR] Contains 1 files. [2024-12-19 17:21:08] [TRACE] [OmnipathR] Cache is locked: FALSE. [2024-12-19 17:21:08] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2024-12-19 17:21:08] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 17:21:08] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-12-19 17:21:08] [TRACE] [OmnipathR] Pandoc version: `3.1.2`. [2024-12-19 17:21:08] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2024-12-19 17:21:08] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 17:21:08] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2024-12-19 17:21:08] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 17:21:08] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2024-12-19 17:21:08] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 17:21:08] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2024-12-19 17:21:08] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 17:21:08] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package can be loaded from final location [2024-12-19 17:21:27] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2024-12-19 17:21:27] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 17:21:27] [INFO] [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-12-19 17:21:27] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2024-12-19 17:21:27] [TRACE] [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-12-19 17:21:27] [TRACE] [OmnipathR] Contains 1 files. [2024-12-19 17:21:27] [TRACE] [OmnipathR] Cache is locked: FALSE. [2024-12-19 17:21:27] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8). [2024-12-19 17:21:27] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 17:21:27] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`. [2024-12-19 17:21:28] [TRACE] [OmnipathR] Pandoc version: `3.1.2`. [2024-12-19 17:21:28] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2024-12-19 17:21:28] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 17:21:28] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2024-12-19 17:21:28] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 17:21:28] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2024-12-19 17:21:28] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 17:21:28] [TRACE] [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2024-12-19 17:21:28] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-12-19 17:21:28] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package keeps a record of temporary installation path * DONE (gINTomics)