| Back to Multiple platform build/check report for BioC 3.22: simplified long |
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This page was generated on 2025-11-24 12:04 -0500 (Mon, 24 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4873 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.2 Patched (2025-11-05 r88990) -- "[Not] Part in a Rumble" | 4654 |
| kjohnson1 | macOS 13.7.5 Ventura | arm64 | 4.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble" | 4600 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4668 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 499/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| cyanoFilter 1.18.0 (landing page) Oluwafemi Olusoji
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| kjohnson1 | macOS 13.7.5 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the cyanoFilter package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cyanoFilter.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: cyanoFilter |
| Version: 1.18.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings cyanoFilter_1.18.0.tar.gz |
| StartedAt: 2025-11-21 03:35:00 -0500 (Fri, 21 Nov 2025) |
| EndedAt: 2025-11-21 03:38:50 -0500 (Fri, 21 Nov 2025) |
| EllapsedTime: 230.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: cyanoFilter.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings cyanoFilter_1.18.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/cyanoFilter.Rcheck’
* using R version 4.5.2 Patched (2025-11-05 r88990)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cyanoFilter/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘cyanoFilter’ version ‘1.18.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cyanoFilter’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
gateFunc 20.096 1.190 18.354
ggpairsDens 11.674 0.302 13.036
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
cyanoFilter.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL cyanoFilter ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’ * installing *source* package ‘cyanoFilter’ ... ** this is package ‘cyanoFilter’ version ‘1.18.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cyanoFilter)
cyanoFilter.Rcheck/cyanoFilter-Ex.timings
| name | user | system | elapsed | |
| MarginEvents | 1.731 | 0.134 | 1.907 | |
| PhytoFilter | 1.529 | 0.074 | 1.621 | |
| PhytopFilter | 1.537 | 0.098 | 1.766 | |
| accTest | 0.860 | 0.054 | 0.928 | |
| accuracy | 1.216 | 0.097 | 1.406 | |
| cellmargin | 0.758 | 0.050 | 0.828 | |
| clusterExtract | 2.063 | 0.069 | 2.178 | |
| clusterExtractp | 2.359 | 0.137 | 2.598 | |
| debrisNc | 0.782 | 0.098 | 0.902 | |
| fullFlowframe-MarginEvents-method | 0.68 | 0.04 | 0.74 | |
| fullFlowframe-PhytopFilter-method | 1.454 | 0.064 | 1.566 | |
| fullFlowframe | 0.725 | 0.050 | 0.865 | |
| gateFunc | 20.096 | 1.190 | 18.354 | |
| ggpairsDens | 11.674 | 0.302 | 13.036 | |
| ggplotDens | 1.432 | 0.074 | 1.724 | |
| ggplotDens2 | 2.760 | 0.133 | 3.402 | |
| goodfcs | 0.096 | 0.014 | 0.125 | |
| is.DebrisFilter | 0.001 | 0.001 | 0.001 | |
| is.MarginEvents | 0.000 | 0.001 | 0.001 | |
| is.PhytopFilter | 0.001 | 0.001 | 0.001 | |
| is.flowFrame | 0.000 | 0.001 | 0.001 | |
| is.flowSet | 0.001 | 0.001 | 0.002 | |
| lnTrans | 0.489 | 0.041 | 0.707 | |
| newFlowframe | 0.537 | 0.338 | 1.364 | |
| nona | 0.240 | 0.022 | 0.295 | |
| noneg | 0.400 | 0.031 | 0.582 | |
| oneDgate | 0.538 | 0.300 | 1.109 | |
| pairsPlot | 2.946 | 0.312 | 4.055 | |
| pigmentGate | 0.646 | 0.154 | 0.910 | |
| reducedFlowframe-MarginEvents-method | 0.704 | 0.054 | 0.849 | |
| reducedFlowframe | 0.704 | 0.051 | 0.856 | |
| retain | 0.032 | 0.003 | 0.035 | |
| rowNumbers | 0.516 | 0.159 | 0.731 | |
| summaries-DebrisFilter-method | 0.683 | 0.047 | 0.817 | |
| summaries-MarginEvents-method | 0.704 | 0.043 | 0.775 | |
| summaries-PhytopFilter-method | 1.412 | 0.066 | 1.515 | |
| summaries | 0.681 | 0.036 | 0.721 | |