Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-12-23 12:06 -0500 (Mon, 23 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 481/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
cyanoFilter 1.14.0 (landing page) Oluwafemi Olusoji
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the cyanoFilter package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cyanoFilter.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: cyanoFilter |
Version: 1.14.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings cyanoFilter_1.14.0.tar.gz |
StartedAt: 2024-12-20 01:57:14 -0500 (Fri, 20 Dec 2024) |
EndedAt: 2024-12-20 02:00:55 -0500 (Fri, 20 Dec 2024) |
EllapsedTime: 221.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: cyanoFilter.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings cyanoFilter_1.14.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/cyanoFilter.Rcheck’ * using R version 4.4.2 (2024-10-31) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘cyanoFilter/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘cyanoFilter’ version ‘1.14.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘cyanoFilter’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed gateFunc 20.234 1.021 17.650 ggpairsDens 7.176 0.213 7.728 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
cyanoFilter.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL cyanoFilter ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘cyanoFilter’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cyanoFilter)
cyanoFilter.Rcheck/cyanoFilter-Ex.timings
name | user | system | elapsed | |
MarginEvents | 1.819 | 0.124 | 2.009 | |
PhytoFilter | 1.549 | 0.129 | 1.892 | |
PhytopFilter | 1.517 | 0.110 | 1.728 | |
accTest | 0.886 | 0.059 | 0.989 | |
accuracy | 1.239 | 0.083 | 1.378 | |
cellmargin | 0.754 | 0.045 | 0.834 | |
clusterExtract | 2.146 | 0.095 | 2.326 | |
clusterExtractp | 2.310 | 0.082 | 2.503 | |
debrisNc | 0.788 | 0.095 | 0.929 | |
fullFlowframe-MarginEvents-method | 0.707 | 0.038 | 0.780 | |
fullFlowframe-PhytopFilter-method | 1.537 | 0.069 | 1.681 | |
fullFlowframe | 0.719 | 0.042 | 0.805 | |
gateFunc | 20.234 | 1.021 | 17.650 | |
ggpairsDens | 7.176 | 0.213 | 7.728 | |
ggplotDens | 1.125 | 0.047 | 1.227 | |
ggplotDens2 | 2.349 | 0.072 | 2.527 | |
goodfcs | 0.103 | 0.013 | 0.126 | |
is.DebrisFilter | 0.001 | 0.000 | 0.001 | |
is.MarginEvents | 0.000 | 0.001 | 0.002 | |
is.PhytopFilter | 0.001 | 0.000 | 0.001 | |
is.flowFrame | 0.000 | 0.000 | 0.001 | |
is.flowSet | 0.001 | 0.001 | 0.001 | |
lnTrans | 0.499 | 0.028 | 0.554 | |
newFlowframe | 0.551 | 0.211 | 0.800 | |
nona | 0.233 | 0.014 | 0.268 | |
noneg | 0.410 | 0.024 | 0.482 | |
oneDgate | 0.528 | 0.203 | 0.765 | |
pairsPlot | 2.979 | 0.255 | 3.500 | |
pigmentGate | 0.671 | 0.126 | 0.835 | |
reducedFlowframe-MarginEvents-method | 0.738 | 0.039 | 0.863 | |
reducedFlowframe | 0.720 | 0.036 | 0.805 | |
retain | 0.040 | 0.002 | 0.044 | |
rowNumbers | 0.536 | 0.134 | 0.732 | |
summaries-DebrisFilter-method | 0.714 | 0.036 | 0.824 | |
summaries-MarginEvents-method | 0.743 | 0.043 | 0.835 | |
summaries-PhytopFilter-method | 1.566 | 0.063 | 1.713 | |
summaries | 0.740 | 0.035 | 0.813 | |