Pierrick Roger
| Snapshot Date: 2024-12-19 13:00 -0500 (Thu, 19 Dec 2024) |
| git_url: https://git.bioconductor.org/packages/biodbHmdb |
| git_branch: RELEASE_3_20 |
| git_last_commit: 0eb718c |
| git_last_commit_date: 2024-10-29 11:06:39 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-12-23 12:03 -0500 (Mon, 23 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 204/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbHmdb 1.12.0 (landing page) Pierrick Roger
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
|
To the developers/maintainers of the biodbHmdb package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbHmdb |
| Version: 1.12.0 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings biodbHmdb_1.12.0.tar.gz |
| StartedAt: 2024-12-19 20:37:18 -0500 (Thu, 19 Dec 2024) |
| EndedAt: 2024-12-19 20:41:43 -0500 (Thu, 19 Dec 2024) |
| EllapsedTime: 265.7 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: biodbHmdb.Rcheck |
| Warnings: 2 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings biodbHmdb_1.12.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.12.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... WARNING
Found the following significant warnings:
EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
EntryMaker.hpp:22:14: warning: ‘bool EntryMaker::closed’ [-Wreorder]
EntryMaker.cpp:5:1: warning: when initialized here [-Wreorder]
See ‘/home/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
* checking installed package size ... NOTE
installed size is 7.2Mb
sub-directories of 1Mb or more:
libs 6.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 3 NOTEs
See
‘/home/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.
biodbHmdb.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘biodbHmdb’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c EntryMaker.cpp -o EntryMaker.o
In file included from EntryMaker.cpp:1:
EntryMaker.hpp: In constructor ‘EntryMaker::EntryMaker()’:
EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
23 | TagDetector accession_tag;
| ^~~~~~~~~~~~~
EntryMaker.hpp:22:14: warning: ‘bool EntryMaker::closed’ [-Wreorder]
22 | bool closed;
| ^~~~~~
EntryMaker.cpp:5:1: warning: when initialized here [-Wreorder]
5 | EntryMaker::EntryMaker() :
| ^~~~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c FileEntryMaker.cpp -o FileEntryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c TagDetector.cpp -o TagDetector.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c XmlSplitter.cpp -o XmlSplitter.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c extractXmlEntries.cpp -o extractXmlEntries.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c test-100-TagDetector.cpp -o test-100-TagDetector.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.20-bioc/R/lib -L/usr/local/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -L/home/biocbuild/bbs-3.20-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package ‘biodbHmdb’
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)
biodbHmdb.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2024-12-19 20:41:28.668][biodb::testContext]
biodb.INFO [2024-12-19 20:41:28.670][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-19 20:41:28.671][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2024-12-19 20:41:28.672][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-19 20:41:28.672][biodb::testContext]
biodb.INFO [2024-12-19 20:41:28.674][biodb::testThat]
biodb.INFO [2024-12-19 20:41:28.675][biodb::testThat] Running test function test_extractXmlEntries (" extractXmlEntries() works fine. ").
biodb.INFO [2024-12-19 20:41:28.676][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-19 20:41:28.676][biodb::testThat]
biodb.INFO [2024-12-19 20:41:28.756][biodb::testContext]
biodb.INFO [2024-12-19 20:41:28.757][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-19 20:41:28.758][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-12-19 20:41:28.758][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-19 20:41:28.759][biodb::testContext]
biodb.INFO [2024-12-19 20:41:28.766][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-12-19 20:41:28.768][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-12-19 20:41:28.774][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-19 20:41:28.775][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-12-19 20:41:28.776][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-12-19 20:41:28.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:28.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:28.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:28.779][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-12-19 20:41:28.801][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-12-19 20:41:28.802][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:28.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:28.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:28.805][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-12-19 20:41:28.806][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-12-19 20:41:28.806][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:28.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:28.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:28.809][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-12-19 20:41:28.810][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-12-19 20:41:28.811][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-12-19 20:41:28.811][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:28.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:28.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:28.814][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-12-19 20:41:28.815][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-12-19 20:41:28.816][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-12-19 20:41:28.816][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:28.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:28.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:28.819][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-12-19 20:41:28.820][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-12-19 20:41:28.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:28.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:28.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:28.823][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-12-19 20:41:28.824][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-12-19 20:41:28.825][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-12-19 20:41:28.826][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:28.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:28.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:28.828][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-12-19 20:41:28.829][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-12-19 20:41:28.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:28.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:28.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:28.832][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-12-19 20:41:28.833][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-12-19 20:41:28.834][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-12-19 20:41:28.835][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:28.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:28.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:28.837][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-12-19 20:41:28.838][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-12-19 20:41:28.839][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-12-19 20:41:28.840][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-12-19 20:41:28.841][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-12-19 20:41:28.842][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-12-19 20:41:28.842][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:28.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:28.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:28.845][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-12-19 20:41:28.846][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-12-19 20:41:28.847][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:28.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:28.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:28.849][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-12-19 20:41:28.850][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-12-19 20:41:28.851][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:28.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:28.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:28.853][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-12-19 20:41:28.854][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-12-19 20:41:28.855][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:28.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:28.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:28.857][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-12-19 20:41:28.858][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-12-19 20:41:28.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:28.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:28.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:28.861][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-12-19 20:41:28.862][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-12-19 20:41:28.863][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:28.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:28.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:28.866][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-12-19 20:41:28.866][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-12-19 20:41:28.871][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-12-19 20:41:28.871][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:28.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:28.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:28.874][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-12-19 20:41:28.875][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-12-19 20:41:28.876][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-12-19 20:41:28.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:28.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:28.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:28.881][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-12-19 20:41:28.912][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:28.927][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-12-19 20:41:28.928][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:28.929][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-19 20:41:28.930][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:28.931][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-19 20:41:28.932][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:28.933][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-19 20:41:28.934][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-19 20:41:28.935][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-19 20:41:28.936][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:28.936][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-12-19 20:41:28.937][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-19 20:41:28.938][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:28.939][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:28.940][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-19 20:41:28.940][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-19 20:41:28.940][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-19 20:41:28.940][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-19 20:41:28.940][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-19 20:41:28.941][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-19 20:41:28.942][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-19 20:41:28.943][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-19 20:41:28.944][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-19 20:41:28.944][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-19 20:41:28.945][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-19 20:41:28.946][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-19 20:41:28.947][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:28.948][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-19 20:41:28.949][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-19 20:41:28.949][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:28.950][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:28.951][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-12-19 20:41:28.953][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:28.954][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-12-19 20:41:28.959][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:28.960][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-19 20:41:28.961][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:28.962][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-19 20:41:28.963][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:28.964][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-19 20:41:28.964][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-19 20:41:28.965][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-19 20:41:28.966][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:28.967][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-12-19 20:41:28.968][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-19 20:41:28.969][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:28.970][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:28.971][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-19 20:41:28.971][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-19 20:41:28.971][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-19 20:41:28.971][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-19 20:41:28.971][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-19 20:41:28.971][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-19 20:41:28.972][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-19 20:41:28.973][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-19 20:41:28.974][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-19 20:41:28.975][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-19 20:41:28.976][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-19 20:41:28.976][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-19 20:41:28.977][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:28.978][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-19 20:41:28.979][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-19 20:41:28.980][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:28.981][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:28.982][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-12-19 20:41:28.983][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:28.984][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-12-19 20:41:28.985][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:28.986][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-19 20:41:28.987][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:28.988][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-19 20:41:28.989][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:28.990][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-19 20:41:28.990][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-19 20:41:28.991][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-19 20:41:28.992][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:28.993][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-12-19 20:41:28.994][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-19 20:41:28.995][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:28.996][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:28.997][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:28.998][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-19 20:41:28.998][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-19 20:41:28.999][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-19 20:41:29.000][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-19 20:41:29.001][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-19 20:41:29.002][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-19 20:41:29.003][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-19 20:41:29.003][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:29.004][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-19 20:41:29.005][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-19 20:41:29.006][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:29.007][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:29.008][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-12-19 20:41:29.009][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:29.010][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-12-19 20:41:29.011][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:29.012][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-19 20:41:29.013][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:29.014][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-19 20:41:29.015][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:29.016][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-19 20:41:29.017][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-19 20:41:29.025][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-19 20:41:29.026][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:29.027][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-12-19 20:41:29.028][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-19 20:41:29.029][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:29.030][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:29.031][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:29.032][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-19 20:41:29.033][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-19 20:41:29.034][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-19 20:41:29.035][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-19 20:41:29.036][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-19 20:41:29.037][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-19 20:41:29.038][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-19 20:41:29.039][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:29.040][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-19 20:41:29.041][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-19 20:41:29.042][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:29.043][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:29.048][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-19 20:41:29.049][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.051][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.055][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.060][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.065][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.069][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.074][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.078][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.082][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.087][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.091][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.096][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.100][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.104][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.109][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.110][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.113][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.114][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.118][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.122][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.126][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-12-19 20:41:29.131][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-12-19 20:41:29.133][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-12-19 20:41:29.134][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-12-19 20:41:29.135][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-12-19 20:41:29.137][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-12-19 20:41:29.151][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-12-19 20:41:29.152][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-12-19 20:41:29.153][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-12-19 20:41:29.155][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-12-19 20:41:29.156][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-12-19 20:41:29.158][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-12-19 20:41:29.159][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-12-19 20:41:29.160][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-12-19 20:41:29.162][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-12-19 20:41:29.163][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-12-19 20:41:29.164][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-12-19 20:41:29.166][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-12-19 20:41:29.167][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-12-19 20:41:29.168][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-12-19 20:41:29.170][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-12-19 20:41:29.171][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-12-19 20:41:29.173][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-12-19 20:41:29.174][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-12-19 20:41:29.176][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-12-19 20:41:29.177][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-12-19 20:41:29.178][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-12-19 20:41:29.180][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-12-19 20:41:29.181][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-12-19 20:41:29.183][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-12-19 20:41:29.184][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-12-19 20:41:29.185][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-12-19 20:41:29.187][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-12-19 20:41:29.188][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-12-19 20:41:29.190][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-12-19 20:41:29.191][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-12-19 20:41:29.192][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-12-19 20:41:29.194][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-12-19 20:41:29.195][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-12-19 20:41:29.196][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-12-19 20:41:29.198][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-12-19 20:41:29.199][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-12-19 20:41:29.200][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-12-19 20:41:29.202][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-12-19 20:41:29.203][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-12-19 20:41:29.205][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-12-19 20:41:29.206][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-12-19 20:41:29.207][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-12-19 20:41:29.209][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-12-19 20:41:29.210][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-12-19 20:41:29.211][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-12-19 20:41:29.213][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-12-19 20:41:29.214][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-12-19 20:41:29.215][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-12-19 20:41:29.216][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-12-19 20:41:29.218][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-12-19 20:41:29.219][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-12-19 20:41:29.220][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-12-19 20:41:29.221][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-12-19 20:41:29.223][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-12-19 20:41:29.224][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-12-19 20:41:29.225][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-12-19 20:41:29.226][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-12-19 20:41:29.228][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-12-19 20:41:29.229][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-12-19 20:41:29.230][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-12-19 20:41:29.231][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-12-19 20:41:29.233][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-12-19 20:41:29.234][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-12-19 20:41:29.235][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-12-19 20:41:29.236][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-12-19 20:41:29.238][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-12-19 20:41:29.239][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-12-19 20:41:29.240][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-12-19 20:41:29.241][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-12-19 20:41:29.243][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-12-19 20:41:29.244][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-12-19 20:41:29.245][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-12-19 20:41:29.246][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-12-19 20:41:29.248][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-12-19 20:41:29.249][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-12-19 20:41:29.250][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-12-19 20:41:29.251][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-12-19 20:41:29.257][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-12-19 20:41:29.259][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-12-19 20:41:29.262][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-19 20:41:29.262][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.264][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.269][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:29.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:29.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.275][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:29.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:29.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.280][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:29.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:29.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.286][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:29.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:29.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.292][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:29.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:29.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.297][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:29.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:29.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.303][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:29.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:29.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.337][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:29.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:29.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.342][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:29.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:29.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.348][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:29.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:29.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.353][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:29.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:29.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.359][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:29.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:29.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.365][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:29.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:29.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.370][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:29.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:29.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:29.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:29.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.380][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.381][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:29.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:29.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.387][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:29.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:29.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:29.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:29.393][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-12-19 20:41:29.402][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-12-19 20:41:29.404][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:29.405][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-12-19 20:41:29.406][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:29.407][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-19 20:41:29.408][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:29.409][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-12-19 20:41:29.410][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:29.411][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-19 20:41:29.412][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-19 20:41:29.413][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-19 20:41:29.414][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:29.414][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-12-19 20:41:29.415][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-19 20:41:29.416][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-12-19 20:41:29.416][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-12-19 20:41:29.416][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-12-19 20:41:29.416][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-12-19 20:41:29.416][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-12-19 20:41:29.416][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-12-19 20:41:29.416][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-12-19 20:41:29.416][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-12-19 20:41:29.416][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-12-19 20:41:29.416][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-12-19 20:41:29.416][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-12-19 20:41:29.416][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-12-19 20:41:29.416][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-12-19 20:41:29.416][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-12-19 20:41:29.416][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-12-19 20:41:29.416][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-12-19 20:41:29.416][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-12-19 20:41:29.416][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-12-19 20:41:29.417][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:29.418][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-19 20:41:29.418][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-12-19 20:41:29.418][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-12-19 20:41:29.419][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-12-19 20:41:29.420][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-19 20:41:29.421][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-19 20:41:29.422][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-19 20:41:29.422][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-19 20:41:29.423][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-19 20:41:29.424][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-19 20:41:29.425][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-12-19 20:41:29.425][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-12-19 20:41:29.426][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-19 20:41:29.427][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-19 20:41:29.427][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:29.428][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:29.434][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-12-19 20:41:29.435][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-12-19 20:41:29.437][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-12-19 20:41:29.438][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-12-19 20:41:29.439][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-12-19 20:41:29.460][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-12-19 20:41:29.461][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-12-19 20:41:29.464][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-12-19 20:41:29.468][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-12-19 20:41:29.472][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-19 20:41:29.472][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-19 20:41:29.474][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-12-19 20:41:29.475][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-12-19 20:41:29.475][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-12-19 20:41:29.475][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-12-19 20:41:29.476][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-19 20:41:29.477][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-19 20:41:29.478][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-12-19 20:41:29.479][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-12-19 20:41:29.480][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-12-19 20:41:29.501][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-12-19 20:41:29.503][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-19 20:41:29.503][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-19 20:41:29.505][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-12-19 20:41:29.506][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-19 20:41:29.506][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-12-19 20:41:29.513][biodb::testThat]
biodb.INFO [2024-12-19 20:41:29.514][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-12-19 20:41:29.515][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-19 20:41:29.516][biodb::testThat]
biodb.TRACE[2024-12-19 20:41:29.519][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2024-12-19 20:41:29.521][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-12-19 20:41:29.524][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-12-19 20:41:29.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-19 20:41:29.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:29.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:29.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:29.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:29.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:29.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-19 20:41:29.549][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:29.550][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:29.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.552][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:29.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:29.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.568][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:29.569][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:29.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.571][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.595][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:29.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:29.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.598][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-19 20:41:29.599][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-19 20:41:29.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.601][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.602][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-19 20:41:29.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-19 20:41:29.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.606][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-12-19 20:41:29.607][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-12-19 20:41:29.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.609][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.610][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-12-19 20:41:29.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-12-19 20:41:29.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.613][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-19 20:41:29.614][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-19 20:41:29.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.616][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-19 20:41:29.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-19 20:41:29.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.621][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:29.622][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:29.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.624][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:29.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:29.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.628][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:29.629][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:29.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.631][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.632][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:29.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:29.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.636][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:29.637][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:29.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.639][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.640][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:29.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:29.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.650][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:29.651][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:29.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.652][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.654][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:29.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:29.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.657][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:29.658][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:29.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.660][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:29.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:29.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.664][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-19 20:41:29.665][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-19 20:41:29.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.667][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.668][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-19 20:41:29.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-19 20:41:29.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.672][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-19 20:41:29.673][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-19 20:41:29.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.675][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.676][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-19 20:41:29.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-19 20:41:29.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.679][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:29.680][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:29.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.682][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:29.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:29.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.687][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:29.688][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:29.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.690][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:29.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:29.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.695][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:29.695][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:29.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.697][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.698][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:29.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:29.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.702][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:29.703][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:29.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.704][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.706][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:29.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:29.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.709][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-19 20:41:29.710][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-19 20:41:29.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.712][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.713][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-19 20:41:29.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-19 20:41:29.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.717][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-12-19 20:41:29.718][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:29.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.719][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.720][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-12-19 20:41:29.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:29.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:29.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:29.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:29.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:29.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:29.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:29.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.764][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-19 20:41:29.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-19 20:41:29.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.771][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-19 20:41:29.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-19 20:41:29.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.775][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-19 20:41:29.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-19 20:41:29.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.778][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-12-19 20:41:29.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-12-19 20:41:29.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.782][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-12-19 20:41:29.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-12-19 20:41:29.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.785][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-12-19 20:41:29.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-12-19 20:41:29.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-19 20:41:29.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-19 20:41:29.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-19 20:41:29.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-19 20:41:29.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-19 20:41:29.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-19 20:41:29.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:29.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:29.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:29.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:29.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:29.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:29.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.810][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:29.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:29.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:29.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:29.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.817][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:29.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:29.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:29.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:29.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:29.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:29.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:29.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:29.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:29.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:29.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:29.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:29.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:29.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:29.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.842][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:29.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:29.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.845][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:29.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:29.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.849][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:29.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:29.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.852][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-19 20:41:29.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-19 20:41:29.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.856][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-19 20:41:29.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-19 20:41:29.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.860][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-19 20:41:29.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-19 20:41:29.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.863][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-19 20:41:29.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-19 20:41:29.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-19 20:41:29.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-19 20:41:29.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.870][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-19 20:41:29.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-19 20:41:29.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.874][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:29.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:29.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:29.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:29.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.881][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:29.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:29.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.884][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:29.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:29.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.888][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:29.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:29.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.891][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:29.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:29.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:29.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:29.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:29.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:29.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:29.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:29.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.909][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:29.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:29.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.913][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:29.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:29.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.916][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:29.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:29.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.920][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:29.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:29.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.923][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:29.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:29.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:29.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:29.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.930][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:29.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:29.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.934][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:29.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:29.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.938][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:29.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:29.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.941][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-19 20:41:29.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-19 20:41:29.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.945][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-19 20:41:29.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-19 20:41:29.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.948][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-19 20:41:29.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-19 20:41:29.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.952][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-12-19 20:41:29.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:29.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:29.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:29.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:29.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:29.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:29.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:29.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.966][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-12-19 20:41:29.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:29.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.986][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:29.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:29.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.989][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:29.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:29.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.993][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:29.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:29.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:29.996][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:29.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:29.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:29.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.000][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:30.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:30.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.004][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:30.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:30.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.007][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:30.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:30.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:30.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:30.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.014][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:30.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:30.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:30.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:30.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:30.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:30.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:30.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:30.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:30.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:30.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:30.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:30.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:30.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:30.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-19 20:41:30.043][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2024-12-19 20:41:30.045][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-19 20:41:30.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-19 20:41:30.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.048][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-19 20:41:30.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-19 20:41:30.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.052][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-19 20:41:30.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-19 20:41:30.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.055][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-19 20:41:30.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-19 20:41:30.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:30.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:30.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.079][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:30.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:30.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:30.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:30.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:30.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:30.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:30.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:30.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:30.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:30.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:30.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:30.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:30.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:30.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.108][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:30.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:30.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.112][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:30.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:30.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.115][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:30.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:30.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:30.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:30.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:30.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:30.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:30.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:30.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.135][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:30.136][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:30.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.138][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:30.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:30.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.149][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:30.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:30.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.152][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:30.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:30.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.156][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:30.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:30.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.164][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:30.165][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:30.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.167][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.168][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:30.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:30.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:30.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:30.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:30.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:30.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:30.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:30.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.188][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:30.189][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:30.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.191][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:30.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:30.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:30.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:30.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.205][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:30.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:30.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.208][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:30.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:30.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.212][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:30.213][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:30.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.215][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.215][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:30.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:30.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-19 20:41:30.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-19 20:41:30.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-19 20:41:30.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-19 20:41:30.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-19 20:41:30.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-19 20:41:30.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.236][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-19 20:41:30.237][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-19 20:41:30.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.238][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-19 20:41:30.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-19 20:41:30.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.249][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:30.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:30.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.252][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:30.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:30.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.256][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:30.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:30.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.259][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:30.260][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:30.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.262][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.263][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:30.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:30.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.272][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:30.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:30.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.276][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:30.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:30.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.279][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:30.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:30.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.283][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:30.284][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:30.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.285][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.290][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:30.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:30.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.299][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:30.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:30.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.303][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:30.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:30.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.306][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:30.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:30.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.310][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:30.311][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:30.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.313][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.313][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:30.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:30.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.323][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-19 20:41:30.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-19 20:41:30.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.327][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-19 20:41:30.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-19 20:41:30.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.330][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-19 20:41:30.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-19 20:41:30.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.334][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-19 20:41:30.335][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-19 20:41:30.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.336][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.337][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-19 20:41:30.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-19 20:41:30.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.347][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-19 20:41:30.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-19 20:41:30.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.350][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-19 20:41:30.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-19 20:41:30.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.354][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-19 20:41:30.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-19 20:41:30.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.357][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-19 20:41:30.358][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-19 20:41:30.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.360][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.361][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-19 20:41:30.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-19 20:41:30.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:30.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:30.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:30.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:30.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:30.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:30.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.381][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:30.382][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:30.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.383][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:30.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:30.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:30.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:30.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:30.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:30.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.401][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:30.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:30.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.404][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:30.405][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:30.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.407][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:30.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:30.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.421][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:30.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:30.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:30.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:30.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:30.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:30.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.432][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:30.433][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:30.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.434][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:30.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:30.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.445][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:30.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:30.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:30.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:30.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:30.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:30.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.456][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:30.456][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:30.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.458][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:30.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:30.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.469][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-19 20:41:30.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-19 20:41:30.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.472][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-19 20:41:30.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-19 20:41:30.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.476][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-19 20:41:30.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-19 20:41:30.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.479][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-19 20:41:30.480][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-19 20:41:30.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.482][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.483][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-19 20:41:30.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-19 20:41:30.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-19 20:41:30.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-19 20:41:30.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-19 20:41:30.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-19 20:41:30.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-19 20:41:30.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-19 20:41:30.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.503][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-19 20:41:30.504][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-19 20:41:30.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.506][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-19 20:41:30.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-19 20:41:30.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.516][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:30.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:30.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:30.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:30.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:30.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:30.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.527][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:30.528][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:30.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.530][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:30.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:30.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.544][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-12-19 20:41:30.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-12-19 20:41:30.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.548][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-12-19 20:41:30.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-12-19 20:41:30.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.551][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-12-19 20:41:30.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-12-19 20:41:30.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.555][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-12-19 20:41:30.556][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-12-19 20:41:30.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.557][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.558][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-12-19 20:41:30.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-12-19 20:41:30.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.568][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:30.569][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:30.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.571][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.574][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-19 20:41:30.575][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-19 20:41:30.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.577][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.581][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-12-19 20:41:30.582][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-12-19 20:41:30.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.583][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.587][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-19 20:41:30.588][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-19 20:41:30.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.590][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.593][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:30.594][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:30.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.596][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.600][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:30.601][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:30.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.602][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.606][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:30.607][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:30.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.609][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.612][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:30.613][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:30.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.615][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.619][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:30.620][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:30.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.621][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.625][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-19 20:41:30.626][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-19 20:41:30.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.628][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.631][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-19 20:41:30.632][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-19 20:41:30.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.634][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.638][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:30.639][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:30.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.640][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.644][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:30.645][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:30.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.647][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.650][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:30.651][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:30.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.653][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.657][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:30.657][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:30.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.659][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.667][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:30.668][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:30.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.669][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.673][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:30.674][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:30.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.676][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.679][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-19 20:41:30.680][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-19 20:41:30.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.682][ef$get] fields variable is a list.
biodb.INFO [2024-12-19 20:41:30.688][biodb::testThat]
biodb.INFO [2024-12-19 20:41:30.689][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-12-19 20:41:30.690][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-19 20:41:30.691][biodb::testThat]
biodb.DEBUG[2024-12-19 20:41:30.704][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-12-19 20:41:30.710][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.INFO [2024-12-19 20:41:30.714][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34" for "hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34".
biodb.DEBUG[2024-12-19 20:41:30.715][self$isDownloaded] Database hmdb.metabolites has not yet been downloaded.
biodb.INFO [2024-12-19 20:41:30.716][self$download] Downloading whole database of hmdb.metabolites.
biodb.INFO [2024-12-19 20:41:30.717][private$doDownload] Downloading HMDB metabolite database at "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" ...
biodb.TRACE[2024-12-19 20:41:30.719][cch$addFilesToCache] Moving files to cache [1]: "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.TRACE[2024-12-19 20:41:30.720][private$doAddFilesToCache] Destination files are [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2024-12-19 20:41:30.721][cch$addFilesToCache] Done adding files.
biodb.DEBUG[2024-12-19 20:41:30.723][self$getDownloadPath] Download path of hmdb.metabolites is "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2024-12-19 20:41:30.724][self$download] Downloading of hmdb.metabolites completed.
biodb.TRACE[2024-12-19 20:41:30.725][self$addFilesToCache] Moving files to cache [1]: "/home/biocbuild/.cache/R/biodb/tmp/marker3e439b61e211d8marker".
biodb.TRACE[2024-12-19 20:41:30.726][private$doAddFilesToCache] Destination files are [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/downloaded.marker".
biodb.DEBUG[2024-12-19 20:41:30.727][self$addFilesToCache] Done adding files.
biodb.DEBUG[2024-12-19 20:41:30.728][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2024-12-19 20:41:30.730][self$download] Extract whole database of hmdb.metabolites.
biodb.INFO [2024-12-19 20:41:30.730][private$doExtractDownload] Extracting content of downloaded',
' HMDB metabolite database...
biodb.DEBUG[2024-12-19 20:41:30.732][self$getDownloadPath] Download path of hmdb.metabolites is "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2024-12-19 20:41:30.733][private$doExtractDownload] Unzipping /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip into /home/biocbuild/.cache/R/biodb/tmp...
biodb.DEBUG[2024-12-19 20:41:30.739][private$findXmlDatabaseFile] Found files [1]: "hmdb_two_full_entries.xml" into /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip.
biodb.DEBUG[2024-12-19 20:41:30.740][private$findXmlDatabaseFile] Found XML file /home/biocbuild/.cache/R/biodb/tmp/hmdb_two_full_entries.xml in ZIP file.
biodb.DEBUG[2024-12-19 20:41:30.741][private$doExtractDownload] Delete existing entry files in cache system.
biodb.DEBUG[2024-12-19 20:41:30.742][private$doExtractDownload] Extract entries from XML file "/home/biocbuild/.cache/R/biodb/tmp/hmdb_two_full_entries.xml", into "/home/biocbuild/.cache/R/biodb/tmp".
biodb.TRACE[2024-12-19 20:41:30.749][self$addFilesToCache] Moving files to cache [2]: "/home/biocbuild/.cache/R/biodb/tmp/HMDB0000001.xml, /home/biocbuild/.cache/R/biodb/tmp/HMDB0000002.xml".
biodb.TRACE[2024-12-19 20:41:30.750][private$doAddFilesToCache] Destination files are [2]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml, /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-12-19 20:41:30.751][self$addFilesToCache] Done adding files.
biodb.DEBUG[2024-12-19 20:41:30.752][private$doExtractDownload] Delete extracted database.
biodb.TRACE[2024-12-19 20:41:30.754][self$addFilesToCache] Moving files to cache [1]: "/home/biocbuild/.cache/R/biodb/tmp/marker3e439b59afffe7marker".
biodb.TRACE[2024-12-19 20:41:30.755][private$doAddFilesToCache] Destination files are [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/extracted.marker".
biodb.DEBUG[2024-12-19 20:41:30.756][self$addFilesToCache] Done adding files.
biodb.TRACE[2024-12-19 20:41:30.757][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-12-19 20:41:30.758][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-19 20:41:30.760][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-12-19 20:41:30.761][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-12-19 20:41:30.783][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-12-19 20:41:30.785][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-12-19 20:41:30.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-19 20:41:30.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:30.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:30.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:30.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:30.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:30.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-19 20:41:30.797][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:30.798][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:30.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.800][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:30.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:30.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.810][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:30.811][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:30.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.812][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.814][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:30.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:30.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.817][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-19 20:41:30.818][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-19 20:41:30.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.820][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.821][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-19 20:41:30.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-19 20:41:30.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.825][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-12-19 20:41:30.826][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-12-19 20:41:30.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.827][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.829][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-12-19 20:41:30.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-12-19 20:41:30.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.832][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-19 20:41:30.833][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-19 20:41:30.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.835][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-19 20:41:30.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-19 20:41:30.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.840][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:30.841][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:30.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.842][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:30.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:30.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.847][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:30.848][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:30.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.850][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.851][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:30.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:30.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.855][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:30.856][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:30.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.858][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:30.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:30.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.862][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:30.863][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:30.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.865][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:30.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:30.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.870][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:30.871][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:30.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.873][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:30.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:30.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.878][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-19 20:41:30.879][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-19 20:41:30.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.880][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.881][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-19 20:41:30.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-19 20:41:30.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.885][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-19 20:41:30.886][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-19 20:41:30.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.888][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-19 20:41:30.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-19 20:41:30.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.892][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:30.893][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:30.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.895][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:30.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:30.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.900][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:30.901][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:30.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.903][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:30.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:30.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.908][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:30.909][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:30.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.910][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.911][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:30.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:30.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.915][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:30.916][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:30.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.918][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.919][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:30.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:30.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.922][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-19 20:41:30.923][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-19 20:41:30.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.925][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.926][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-19 20:41:30.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-19 20:41:30.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.930][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-12-19 20:41:30.934][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:30.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.936][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.937][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-12-19 20:41:30.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:30.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:30.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:30.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:30.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:30.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:30.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:30.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.952][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-19 20:41:30.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-19 20:41:30.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.955][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-19 20:41:30.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-19 20:41:30.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.959][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-19 20:41:30.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-19 20:41:30.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.962][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-12-19 20:41:30.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-12-19 20:41:30.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.966][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-12-19 20:41:30.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-12-19 20:41:30.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.970][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-12-19 20:41:30.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-12-19 20:41:30.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-19 20:41:30.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-19 20:41:30.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-19 20:41:30.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-19 20:41:30.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-19 20:41:30.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-19 20:41:30.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:30.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:30.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:30.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:30.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:30.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:30.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:30.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:30.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:30.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:30.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:30.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:31.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:31.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:31.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:31.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:31.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.009][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:31.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:31.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.012][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:31.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:31.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:31.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:31.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:31.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:31.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:31.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:31.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.027][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:31.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:31.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.030][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:31.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:31.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.034][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:31.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:31.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.037][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-19 20:41:31.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-19 20:41:31.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.041][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-19 20:41:31.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-19 20:41:31.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.044][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-19 20:41:31.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-19 20:41:31.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-19 20:41:31.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-19 20:41:31.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.051][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-19 20:41:31.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-19 20:41:31.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.059][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-19 20:41:31.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-19 20:41:31.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:31.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:31.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.066][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:31.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:31.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:31.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:31.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.073][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:31.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:31.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.077][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:31.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:31.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.080][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:31.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:31.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:31.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:31.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:31.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:31.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:31.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:31.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.095][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:31.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:31.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.098][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:31.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:31.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.102][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:31.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:31.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.105][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:31.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:31.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.109][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:31.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:31.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.112][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:31.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:31.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.116][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:31.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:31.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.119][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:31.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:31.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.123][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:31.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:31.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.127][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-19 20:41:31.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-19 20:41:31.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.130][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-19 20:41:31.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-19 20:41:31.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.134][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-19 20:41:31.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-19 20:41:31.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.137][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-12-19 20:41:31.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:31.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.141][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:31.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:31.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.144][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:31.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:31.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:31.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:31.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.152][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-12-19 20:41:31.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:31.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.157][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:31.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:31.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.160][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:31.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:31.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.164][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:31.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:31.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.167][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:31.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:31.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.171][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:31.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:31.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.175][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:31.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:31.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.179][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:31.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:31.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:31.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:31.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.190][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:31.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:31.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:31.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:31.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:31.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:31.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:31.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:31.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:31.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:31.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:31.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:31.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:31.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:31.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-19 20:41:31.215][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-12-19 20:41:31.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-19 20:41:31.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-19 20:41:31.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-19 20:41:31.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-19 20:41:31.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-19 20:41:31.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-19 20:41:31.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-19 20:41:31.234][biodb::testThat]
biodb.INFO [2024-12-19 20:41:31.235][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-12-19 20:41:31.236][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-19 20:41:31.237][biodb::testThat]
biodb.TRACE[2024-12-19 20:41:31.240][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:31.241][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:31.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.242][ef$get] fields variable is a list.
biodb.DEBUG[2024-12-19 20:41:31.244][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2024-12-19 20:41:31.266][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:31.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:31.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.269][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:31.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:31.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.273][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:31.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:31.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-19 20:41:31.279][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2024-12-19 20:41:31.280][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-12-19 20:41:31.281][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-12-19 20:41:31.282][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-12-19 20:41:31.283][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:31.284][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:31.286][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-12-19 20:41:31.287][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:31.288][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-12-19 20:41:31.289][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-12-19 20:41:31.290][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-12-19 20:41:31.291][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-12-19 20:41:31.292][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-12-19 20:41:31.293][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-12-19 20:41:31.293][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-12-19 20:41:31.295][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:31.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:31.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.299][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:31.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:31.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.302][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:31.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:31.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.310][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:31.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:31.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-19 20:41:31.313][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-12-19 20:41:31.314][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-12-19 20:41:31.315][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-12-19 20:41:31.325][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:31.326][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:31.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.328][ef$get] fields variable is a list.
biodb.DEBUG[2024-12-19 20:41:31.329][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2024-12-19 20:41:31.339][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:31.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:31.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.343][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:31.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:31.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.346][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:31.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:31.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-19 20:41:31.352][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2024-12-19 20:41:31.400][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-12-19 20:41:31.401][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-12-19 20:41:31.402][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-12-19 20:41:31.419][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:31.420][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:31.421][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-12-19 20:41:31.422][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:31.423][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-12-19 20:41:31.437][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-12-19 20:41:31.438][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-12-19 20:41:31.439][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-12-19 20:41:31.440][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-12-19 20:41:31.441][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-12-19 20:41:31.442][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-12-19 20:41:31.443][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:31.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:31.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.447][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:31.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:31.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.450][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:31.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:31.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.454][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:31.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:31.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-19 20:41:31.458][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-12-19 20:41:31.458][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-12-19 20:41:31.459][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-12-19 20:41:31.469][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:31.470][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:31.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.472][ef$get] fields variable is a list.
biodb.DEBUG[2024-12-19 20:41:31.473][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2024-12-19 20:41:31.482][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:31.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:31.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.486][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:31.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:31.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.490][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:31.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:31.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-19 20:41:31.496][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2024-12-19 20:41:31.497][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2024-12-19 20:41:31.498][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-12-19 20:41:31.499][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-12-19 20:41:31.500][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:31.501][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:31.503][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-12-19 20:41:31.504][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:31.505][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-12-19 20:41:31.506][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-12-19 20:41:31.507][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-12-19 20:41:31.508][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-12-19 20:41:31.509][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-12-19 20:41:31.510][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-12-19 20:41:31.510][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-12-19 20:41:31.512][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:31.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:31.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.516][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:31.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:31.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.519][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:31.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:31.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.523][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:31.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:31.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-19 20:41:31.526][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-12-19 20:41:31.527][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-12-19 20:41:31.528][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2024-12-19 20:41:31.544][biodb::testThat]
biodb.INFO [2024-12-19 20:41:31.545][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-12-19 20:41:31.546][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-19 20:41:31.547][biodb::testThat]
biodb.TRACE[2024-12-19 20:41:31.556][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:31.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:31.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.559][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:31.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:31.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.563][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:31.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:31.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-19 20:41:31.575][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-12-19 20:41:31.576][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-12-19 20:41:31.577][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-12-19 20:41:31.578][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:31.580][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:31.581][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-12-19 20:41:31.582][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:31.583][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-12-19 20:41:31.584][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-12-19 20:41:31.585][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-12-19 20:41:31.586][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-12-19 20:41:31.587][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-12-19 20:41:31.588][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-12-19 20:41:31.589][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-12-19 20:41:31.590][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:31.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:31.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.594][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:31.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:31.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.597][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:31.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:31.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.601][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:31.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:31.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-19 20:41:31.605][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-12-19 20:41:31.605][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2024-12-19 20:41:31.617][biodb::testThat]
biodb.INFO [2024-12-19 20:41:31.618][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-12-19 20:41:31.619][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-19 20:41:31.620][biodb::testThat]
biodb.TRACE[2024-12-19 20:41:31.637][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-19 20:41:31.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-19 20:41:31.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.641][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-19 20:41:31.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-19 20:41:31.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.644][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-19 20:41:31.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-19 20:41:31.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.648][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-19 20:41:31.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-19 20:41:31.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.693][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-19 20:41:31.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-19 20:41:31.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.696][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-19 20:41:31.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-19 20:41:31.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.700][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-19 20:41:31.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-19 20:41:31.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:31.703][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-19 20:41:31.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-19 20:41:31.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:31.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-19 20:41:31.712][biodb::testThat]
biodb.INFO [2024-12-19 20:41:31.713][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-12-19 20:41:31.713][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-19 20:41:31.714][biodb::testThat]
biodb.INFO [2024-12-19 20:41:31.721][biodb::testThat]
biodb.INFO [2024-12-19 20:41:31.722][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-12-19 20:41:31.723][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-19 20:41:31.723][biodb::testThat]
biodb.INFO [2024-12-19 20:41:31.730][biodb::testThat]
biodb.INFO [2024-12-19 20:41:31.731][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-12-19 20:41:31.732][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-19 20:41:31.732][biodb::testThat]
biodb.DEBUG[2024-12-19 20:41:31.735][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2024-12-19 20:41:33.398][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2024-12-19 20:41:33.449][biodb::testThat]
biodb.INFO [2024-12-19 20:41:33.451][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-12-19 20:41:33.454][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-19 20:41:33.456][biodb::testThat]
biodb.DEBUG[2024-12-19 20:41:33.732][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2024-12-19 20:41:33.803][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:33.805][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:33.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:33.807][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:33.808][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:33.809][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:33.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:33.811][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:33.812][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:33.813][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:33.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:33.815][ef$get] fields variable is a list.
biodb.INFO [2024-12-19 20:41:33.816][biodb::testThat]
biodb.INFO [2024-12-19 20:41:33.817][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2024-12-19 20:41:33.818][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-19 20:41:33.819][biodb::testThat]
biodb.DEBUG[2024-12-19 20:41:33.821][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-12-19 20:41:33.880][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-12-19 20:41:33.882][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:33.883][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-12-19 20:41:33.898][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-12-19 20:41:33.900][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-19 20:41:33.900][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-19 20:41:33.901][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-12-19 20:41:33.903][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:33.904][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-12-19 20:41:33.905][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-12-19 20:41:33.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-19 20:41:33.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:33.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:33.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:33.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:33.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:33.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-19 20:41:33.917][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:33.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:33.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:33.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:33.921][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:33.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:33.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:33.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:33.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:33.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:33.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:33.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:33.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:33.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:33.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:33.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:33.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:33.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:33.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:33.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:33.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:33.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:33.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:33.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:33.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:33.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:33.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:33.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:33.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:33.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:33.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:33.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-19 20:41:33.973][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-12-19 20:41:33.974][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-12-19 20:41:34.000][biodb::testThat]
biodb.INFO [2024-12-19 20:41:34.002][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-12-19 20:41:34.003][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-19 20:41:34.004][biodb::testThat]
biodb.DEBUG[2024-12-19 20:41:34.012][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2024-12-19 20:41:34.013][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2024-12-19 20:41:34.015][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-12-19 20:41:34.016][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:34.018][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-12-19 20:41:34.020][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2024-12-19 20:41:34.021][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-19 20:41:34.022][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-19 20:41:34.023][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-12-19 20:41:34.025][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:34.026][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-12-19 20:41:34.027][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-12-19 20:41:34.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-19 20:41:34.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:34.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:34.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-19 20:41:34.040][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:34.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:34.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.045][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:34.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:34.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:34.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:34.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:34.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:34.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:34.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:34.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:34.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:34.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:34.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:34.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:34.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:34.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-19 20:41:34.086][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-12-19 20:41:34.087][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-12-19 20:41:34.088][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2024-12-19 20:41:34.100][biodb::testThat]
biodb.INFO [2024-12-19 20:41:34.101][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2024-12-19 20:41:34.102][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-19 20:41:34.103][biodb::testThat]
biodb.INFO [2024-12-19 20:41:34.123][biodb::testThat]
biodb.INFO [2024-12-19 20:41:34.124][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2024-12-19 20:41:34.125][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-19 20:41:34.125][biodb::testThat]
biodb.DEBUG[2024-12-19 20:41:34.128][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:34.129][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:34.130][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-12-19 20:41:34.132][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:34.132][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-12-19 20:41:34.134][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-12-19 20:41:34.135][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-12-19 20:41:34.136][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-12-19 20:41:34.136][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2024-12-19 20:41:34.143][biodb::testThat]
biodb.INFO [2024-12-19 20:41:34.144][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2024-12-19 20:41:34.145][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-19 20:41:34.145][biodb::testThat]
biodb.DEBUG[2024-12-19 20:41:34.148][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:34.149][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:34.150][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-12-19 20:41:34.152][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:34.152][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-12-19 20:41:34.154][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-12-19 20:41:34.155][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-12-19 20:41:34.155][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-12-19 20:41:34.156][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2024-12-19 20:41:34.164][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:34.165][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:34.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.166][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.167][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:34.168][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:34.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.170][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.171][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:34.172][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:34.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.174][ef$get] fields variable is a list.
biodb.INFO [2024-12-19 20:41:34.174][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-12-19 20:41:34.176][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-12-19 20:41:34.188][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-12-19 20:41:34.189][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-12-19 20:41:34.189][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:34.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:34.191][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.193][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-12-19 20:41:34.197][biodb::testContext]
biodb.INFO [2024-12-19 20:41:34.198][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-19 20:41:34.198][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2024-12-19 20:41:34.199][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-19 20:41:34.200][biodb::testContext]
biodb.INFO [2024-12-19 20:41:34.204][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-12-19 20:41:34.205][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-12-19 20:41:34.209][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-19 20:41:34.210][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-12-19 20:41:34.211][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-12-19 20:41:34.212][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.214][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-12-19 20:41:34.215][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-12-19 20:41:34.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.218][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-12-19 20:41:34.219][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-12-19 20:41:34.220][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.223][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-12-19 20:41:34.224][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-12-19 20:41:34.225][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-12-19 20:41:34.225][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.228][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-12-19 20:41:34.229][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-12-19 20:41:34.230][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-12-19 20:41:34.230][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.233][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-12-19 20:41:34.234][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-12-19 20:41:34.235][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.237][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-12-19 20:41:34.238][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-12-19 20:41:34.239][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-12-19 20:41:34.240][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.242][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-12-19 20:41:34.243][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-12-19 20:41:34.244][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.247][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-12-19 20:41:34.248][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-12-19 20:41:34.248][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-12-19 20:41:34.249][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.252][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-12-19 20:41:34.253][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-12-19 20:41:34.254][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-12-19 20:41:34.254][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-12-19 20:41:34.255][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-12-19 20:41:34.256][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-12-19 20:41:34.257][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.259][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-12-19 20:41:34.260][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-12-19 20:41:34.261][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.264][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-12-19 20:41:34.265][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-12-19 20:41:34.265][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.268][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-12-19 20:41:34.269][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-12-19 20:41:34.270][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.272][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-12-19 20:41:34.273][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-12-19 20:41:34.274][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.276][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-12-19 20:41:34.277][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-12-19 20:41:34.278][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.281][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-12-19 20:41:34.282][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-12-19 20:41:34.286][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-12-19 20:41:34.286][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.294][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-12-19 20:41:34.295][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-12-19 20:41:34.295][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-12-19 20:41:34.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.299][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-12-19 20:41:34.301][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:34.302][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-12-19 20:41:34.302][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:34.303][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-19 20:41:34.304][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:34.305][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-19 20:41:34.306][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:34.307][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-19 20:41:34.308][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-19 20:41:34.309][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-19 20:41:34.310][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:34.311][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-12-19 20:41:34.312][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-19 20:41:34.312][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:34.313][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:34.314][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-19 20:41:34.314][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-19 20:41:34.314][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-19 20:41:34.314][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-19 20:41:34.314][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-19 20:41:34.315][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-19 20:41:34.316][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-19 20:41:34.317][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-19 20:41:34.318][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-19 20:41:34.319][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-19 20:41:34.319][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-19 20:41:34.320][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-19 20:41:34.321][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:34.322][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-19 20:41:34.323][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-19 20:41:34.324][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:34.325][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:34.326][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-12-19 20:41:34.327][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:34.328][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-12-19 20:41:34.329][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:34.330][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-19 20:41:34.331][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:34.332][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-19 20:41:34.333][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:34.334][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-19 20:41:34.335][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-19 20:41:34.336][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-19 20:41:34.337][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:34.337][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-12-19 20:41:34.338][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-19 20:41:34.339][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:34.340][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:34.341][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-19 20:41:34.341][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-19 20:41:34.341][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-19 20:41:34.341][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-19 20:41:34.341][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-19 20:41:34.342][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-19 20:41:34.343][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-19 20:41:34.344][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-19 20:41:34.344][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-19 20:41:34.345][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-19 20:41:34.346][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-19 20:41:34.347][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-19 20:41:34.348][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:34.349][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-19 20:41:34.350][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-19 20:41:34.350][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:34.351][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:34.352][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-12-19 20:41:34.354][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:34.355][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-12-19 20:41:34.356][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:34.357][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-19 20:41:34.358][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:34.359][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-19 20:41:34.359][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:34.360][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-19 20:41:34.361][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-19 20:41:34.362][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-19 20:41:34.363][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:34.364][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-12-19 20:41:34.365][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-19 20:41:34.366][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:34.367][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:34.368][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:34.368][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-19 20:41:34.369][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-19 20:41:34.370][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-19 20:41:34.371][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-19 20:41:34.372][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-19 20:41:34.373][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-19 20:41:34.374][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-19 20:41:34.374][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:34.375][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-19 20:41:34.376][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-19 20:41:34.377][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:34.378][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:34.379][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-12-19 20:41:34.381][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:34.382][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-12-19 20:41:34.382][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:34.383][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-19 20:41:34.384][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:34.385][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-19 20:41:34.386][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:34.391][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-19 20:41:34.392][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-19 20:41:34.393][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-19 20:41:34.394][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:34.395][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-12-19 20:41:34.396][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-19 20:41:34.397][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:34.397][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:34.398][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:34.399][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-19 20:41:34.400][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-19 20:41:34.401][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-19 20:41:34.402][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-19 20:41:34.403][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-19 20:41:34.403][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-19 20:41:34.404][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-19 20:41:34.405][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:34.406][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-19 20:41:34.407][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-19 20:41:34.408][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:34.409][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:34.410][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-19 20:41:34.411][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.412][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.416][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.421][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.425][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.429][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.433][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.437][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.441][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.445][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.449][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.453][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.457][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.461][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.465][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.469][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.473][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.477][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.481][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-12-19 20:41:34.482][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-12-19 20:41:34.484][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-12-19 20:41:34.489][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-12-19 20:41:34.490][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-12-19 20:41:34.492][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-12-19 20:41:34.493][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-12-19 20:41:34.494][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-12-19 20:41:34.495][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-12-19 20:41:34.497][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-12-19 20:41:34.498][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-12-19 20:41:34.499][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-12-19 20:41:34.500][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-12-19 20:41:34.502][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-12-19 20:41:34.503][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-12-19 20:41:34.504][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-12-19 20:41:34.505][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-12-19 20:41:34.507][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-12-19 20:41:34.508][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-12-19 20:41:34.509][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-12-19 20:41:34.510][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-12-19 20:41:34.512][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-12-19 20:41:34.513][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-12-19 20:41:34.514][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-12-19 20:41:34.516][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-12-19 20:41:34.517][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-12-19 20:41:34.518][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-12-19 20:41:34.519][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-12-19 20:41:34.521][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-12-19 20:41:34.522][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-12-19 20:41:34.523][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-12-19 20:41:34.524][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-12-19 20:41:34.526][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-12-19 20:41:34.527][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-12-19 20:41:34.528][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-12-19 20:41:34.529][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-12-19 20:41:34.531][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-12-19 20:41:34.532][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-12-19 20:41:34.533][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-12-19 20:41:34.535][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-12-19 20:41:34.536][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-12-19 20:41:34.537][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-12-19 20:41:34.538][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-12-19 20:41:34.540][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-12-19 20:41:34.541][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-12-19 20:41:34.542][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-12-19 20:41:34.543][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-12-19 20:41:34.545][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-12-19 20:41:34.546][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-12-19 20:41:34.547][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-12-19 20:41:34.549][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-12-19 20:41:34.550][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-12-19 20:41:34.551][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-12-19 20:41:34.552][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-12-19 20:41:34.554][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-12-19 20:41:34.555][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-12-19 20:41:34.556][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-12-19 20:41:34.557][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-12-19 20:41:34.559][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-12-19 20:41:34.560][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-12-19 20:41:34.561][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-12-19 20:41:34.562][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-12-19 20:41:34.564][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-12-19 20:41:34.565][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-12-19 20:41:34.566][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-12-19 20:41:34.568][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-12-19 20:41:34.569][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-12-19 20:41:34.570][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-12-19 20:41:34.571][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-12-19 20:41:34.573][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-12-19 20:41:34.574][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-12-19 20:41:34.575][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-12-19 20:41:34.576][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-12-19 20:41:34.578][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-12-19 20:41:34.579][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-12-19 20:41:34.585][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-12-19 20:41:34.586][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-12-19 20:41:34.588][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-12-19 20:41:34.589][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-12-19 20:41:34.590][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-12-19 20:41:34.591][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-12-19 20:41:34.593][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-12-19 20:41:34.594][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-12-19 20:41:34.595][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-12-19 20:41:34.597][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-12-19 20:41:34.598][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-19 20:41:34.598][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.600][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.602][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:34.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:34.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:34.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:34.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.613][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:34.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:34.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.619][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:34.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:34.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.624][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:34.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:34.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.630][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:34.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:34.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.636][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:34.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:34.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.642][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:34.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:34.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.647][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:34.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:34.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.653][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:34.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:34.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:34.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:34.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.664][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:34.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:34.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:34.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:34.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.675][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:34.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:34.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.685][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:34.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:34.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.691][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:34.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:34.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.697][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:34.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:34.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:34.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:34.703][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-12-19 20:41:34.704][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-12-19 20:41:34.706][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:34.707][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-12-19 20:41:34.708][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:34.709][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-19 20:41:34.710][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:34.711][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-12-19 20:41:34.712][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:34.713][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-19 20:41:34.713][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-19 20:41:34.714][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-19 20:41:34.715][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:34.716][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-12-19 20:41:34.717][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-19 20:41:34.718][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-12-19 20:41:34.718][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-12-19 20:41:34.718][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-12-19 20:41:34.718][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-12-19 20:41:34.718][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-12-19 20:41:34.718][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-12-19 20:41:34.718][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-12-19 20:41:34.718][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-12-19 20:41:34.718][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-12-19 20:41:34.718][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-12-19 20:41:34.718][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-12-19 20:41:34.718][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-12-19 20:41:34.718][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-12-19 20:41:34.718][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-12-19 20:41:34.718][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-12-19 20:41:34.718][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-12-19 20:41:34.718][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-12-19 20:41:34.718][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-12-19 20:41:34.719][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:34.720][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-19 20:41:34.720][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-12-19 20:41:34.720][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-12-19 20:41:34.721][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-12-19 20:41:34.722][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-19 20:41:34.723][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-19 20:41:34.724][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-19 20:41:34.725][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-19 20:41:34.725][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-19 20:41:34.726][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-19 20:41:34.727][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-12-19 20:41:34.727][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-12-19 20:41:34.728][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-19 20:41:34.729][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-19 20:41:34.730][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:34.731][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:34.732][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-12-19 20:41:34.733][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-12-19 20:41:34.735][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-12-19 20:41:34.736][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-12-19 20:41:34.738][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-12-19 20:41:34.741][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-12-19 20:41:34.741][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-12-19 20:41:34.742][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-12-19 20:41:34.744][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-12-19 20:41:34.745][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-19 20:41:34.746][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-19 20:41:34.747][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-12-19 20:41:34.748][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-12-19 20:41:34.749][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-12-19 20:41:34.749][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-12-19 20:41:34.750][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-19 20:41:34.751][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-19 20:41:34.751][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-12-19 20:41:34.752][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-12-19 20:41:34.753][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-12-19 20:41:34.754][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-12-19 20:41:34.756][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-19 20:41:34.756][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-19 20:41:34.758][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-12-19 20:41:34.759][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-19 20:41:34.760][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-12-19 20:41:34.761][biodb::testThat]
biodb.INFO [2024-12-19 20:41:34.762][biodb::testThat] Running test function test.hmdbmetabolite.nbentries (" HMDB metabolite returns enough entries. ").
biodb.INFO [2024-12-19 20:41:34.763][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-19 20:41:34.764][biodb::testThat]
biodb.DEBUG[2024-12-19 20:41:34.767][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:34.768][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:34.770][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-12-19 20:41:34.771][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:34.772][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-12-19 20:41:34.773][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-12-19 20:41:34.774][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-12-19 20:41:34.775][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-12-19 20:41:34.776][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-12-19 20:41:34.783][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2024-12-19 20:41:34.787][biodb::testThat]
biodb.INFO [2024-12-19 20:41:34.788][biodb::testThat] Running test function test.old.accession (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2024-12-19 20:41:34.789][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-19 20:41:34.790][biodb::testThat]
biodb.DEBUG[2024-12-19 20:41:34.791][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-12-19 20:41:34.792][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-12-19 20:41:34.794][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:34.795][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-12-19 20:41:34.797][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-12-19 20:41:34.798][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-19 20:41:34.799][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-12-19 20:41:34.800][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-12-19 20:41:34.801][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-12-19 20:41:34.803][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-12-19 20:41:34.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-19 20:41:34.805][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:34.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:34.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:34.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:34.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:34.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-19 20:41:34.815][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:34.816][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:34.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.818][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:34.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:34.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.823][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:34.824][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:34.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.826][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.827][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:34.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:34.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.831][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-19 20:41:34.831][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-19 20:41:34.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.833][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.834][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-19 20:41:34.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-19 20:41:34.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.838][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-12-19 20:41:34.839][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-12-19 20:41:34.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.841][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.842][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-12-19 20:41:34.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-12-19 20:41:34.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.846][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-19 20:41:34.847][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-19 20:41:34.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.848][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-19 20:41:34.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-19 20:41:34.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.853][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:34.854][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:34.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.856][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:34.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:34.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.861][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:34.862][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:34.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.864][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.865][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:34.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:34.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.868][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:34.869][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:34.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.871][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.872][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:34.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:34.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.876][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:34.877][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:34.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.883][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:34.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:34.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.888][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:34.889][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:34.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.891][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:34.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:34.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.895][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-19 20:41:34.896][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-19 20:41:34.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.898][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.899][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-19 20:41:34.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-19 20:41:34.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.903][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-19 20:41:34.904][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-19 20:41:34.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.906][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-19 20:41:34.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-19 20:41:34.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.910][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:34.911][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:34.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.913][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:34.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:34.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.918][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:34.919][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:34.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.921][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:34.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:34.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.926][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:34.926][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:34.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.928][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.929][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:34.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:34.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.933][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:34.934][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:34.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.936][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.937][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:34.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:34.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.940][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-19 20:41:34.941][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-19 20:41:34.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.943][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.944][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-19 20:41:34.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-19 20:41:34.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.948][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-12-19 20:41:34.949][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:34.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.951][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.952][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-12-19 20:41:34.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:34.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:34.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:34.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:34.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:34.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:34.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:34.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.967][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-19 20:41:34.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-19 20:41:34.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.970][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-19 20:41:34.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-19 20:41:34.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.974][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-19 20:41:34.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-19 20:41:34.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.982][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-12-19 20:41:34.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-12-19 20:41:34.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.986][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-12-19 20:41:34.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-12-19 20:41:34.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.989][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-12-19 20:41:34.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-12-19 20:41:34.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-19 20:41:34.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-19 20:41:34.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:34.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-19 20:41:34.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-19 20:41:34.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:34.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-19 20:41:35.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-19 20:41:35.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:35.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:35.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:35.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:35.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:35.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:35.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:35.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:35.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:35.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:35.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.022][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:35.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:35.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:35.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:35.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:35.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:35.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:35.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:35.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:35.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:35.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:35.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:35.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:35.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:35.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.047][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:35.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:35.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.050][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:35.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:35.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.054][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:35.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:35.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.058][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-19 20:41:35.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-19 20:41:35.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.061][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-19 20:41:35.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-19 20:41:35.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.065][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-19 20:41:35.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-19 20:41:35.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.069][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-19 20:41:35.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-19 20:41:35.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.072][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-19 20:41:35.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-19 20:41:35.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-19 20:41:35.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-19 20:41:35.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.084][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:35.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:35.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:35.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:35.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.091][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:35.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:35.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.095][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:35.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:35.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.099][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:35.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:35.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.102][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:35.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:35.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:35.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:35.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:35.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:35.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:35.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:35.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.117][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:35.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:35.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.121][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:35.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:35.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.124][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:35.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:35.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.128][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:35.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:35.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.132][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:35.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:35.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:35.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:35.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.139][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:35.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:35.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.143][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:35.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:35.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.146][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:35.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:35.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.150][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-19 20:41:35.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-19 20:41:35.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.153][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-19 20:41:35.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-19 20:41:35.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.157][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-19 20:41:35.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-19 20:41:35.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.161][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-12-19 20:41:35.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:35.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:35.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:35.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:35.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:35.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:35.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:35.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.180][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-12-19 20:41:35.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:35.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.184][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:35.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:35.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.188][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:35.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:35.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.192][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:35.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:35.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.195][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:35.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:35.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.199][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:35.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:35.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.203][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:35.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:35.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.207][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:35.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:35.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:35.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:35.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.214][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:35.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:35.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:35.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:35.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:35.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:35.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:35.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:35.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:35.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:35.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:35.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:35.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:35.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:35.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-19 20:41:35.240][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-12-19 20:41:35.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:35.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:35.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:35.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:35.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:35.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:35.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-19 20:41:35.256][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-12-19 20:41:35.257][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-12-19 20:41:35.258][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-12-19 20:41:35.259][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-12-19 20:41:35.260][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:35.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:35.262][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.263][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-12-19 20:41:35.267][biodb::testContext]
biodb.INFO [2024-12-19 20:41:35.268][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-19 20:41:35.269][biodb::testContext] Test context - Test search of entries
biodb.INFO [2024-12-19 20:41:35.270][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-19 20:41:35.271][biodb::testContext]
biodb.INFO [2024-12-19 20:41:35.278][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-12-19 20:41:35.280][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-12-19 20:41:35.284][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-19 20:41:35.285][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-12-19 20:41:35.286][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-12-19 20:41:35.287][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.289][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-12-19 20:41:35.290][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-12-19 20:41:35.291][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.293][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-12-19 20:41:35.294][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-12-19 20:41:35.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.298][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-12-19 20:41:35.299][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-12-19 20:41:35.300][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-12-19 20:41:35.300][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.303][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-12-19 20:41:35.304][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-12-19 20:41:35.305][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-12-19 20:41:35.306][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.308][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-12-19 20:41:35.309][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-12-19 20:41:35.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.312][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-12-19 20:41:35.313][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-12-19 20:41:35.314][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-12-19 20:41:35.315][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.317][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-12-19 20:41:35.318][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-12-19 20:41:35.319][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.322][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-12-19 20:41:35.322][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-12-19 20:41:35.323][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-12-19 20:41:35.324][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.327][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-12-19 20:41:35.328][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-12-19 20:41:35.328][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-12-19 20:41:35.329][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-12-19 20:41:35.330][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-12-19 20:41:35.331][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-12-19 20:41:35.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.334][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-12-19 20:41:35.335][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-12-19 20:41:35.336][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.339][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-12-19 20:41:35.340][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-12-19 20:41:35.340][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.343][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-12-19 20:41:35.344][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-12-19 20:41:35.345][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.347][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-12-19 20:41:35.348][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-12-19 20:41:35.349][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.351][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-12-19 20:41:35.352][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-12-19 20:41:35.353][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.355][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-12-19 20:41:35.356][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-12-19 20:41:35.360][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-12-19 20:41:35.361][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.363][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-12-19 20:41:35.364][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-12-19 20:41:35.365][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-12-19 20:41:35.366][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.369][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-12-19 20:41:35.370][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:35.371][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-12-19 20:41:35.372][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:35.373][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-19 20:41:35.378][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:35.379][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-19 20:41:35.380][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:35.381][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-19 20:41:35.382][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-19 20:41:35.383][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-19 20:41:35.384][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:35.385][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-12-19 20:41:35.385][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-19 20:41:35.386][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:35.387][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:35.388][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-19 20:41:35.388][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-19 20:41:35.388][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-19 20:41:35.388][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-19 20:41:35.388][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-19 20:41:35.389][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-19 20:41:35.390][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-19 20:41:35.391][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-19 20:41:35.392][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-19 20:41:35.392][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-19 20:41:35.393][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-19 20:41:35.394][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-19 20:41:35.395][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:35.396][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-19 20:41:35.397][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-19 20:41:35.398][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:35.398][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:35.400][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-12-19 20:41:35.401][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:35.402][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-12-19 20:41:35.403][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:35.404][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-19 20:41:35.405][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:35.406][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-19 20:41:35.407][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:35.408][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-19 20:41:35.408][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-19 20:41:35.409][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-19 20:41:35.415][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:35.417][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-12-19 20:41:35.418][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-19 20:41:35.419][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:35.420][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:35.421][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-19 20:41:35.421][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-19 20:41:35.421][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-19 20:41:35.421][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-19 20:41:35.421][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-19 20:41:35.422][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-19 20:41:35.423][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-19 20:41:35.424][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-19 20:41:35.425][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-19 20:41:35.426][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-19 20:41:35.427][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-19 20:41:35.428][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-19 20:41:35.429][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:35.430][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-19 20:41:35.431][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-19 20:41:35.432][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:35.433][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:35.435][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-12-19 20:41:35.437][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:35.438][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-12-19 20:41:35.439][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:35.440][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-19 20:41:35.441][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:35.442][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-19 20:41:35.443][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:35.444][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-19 20:41:35.445][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-19 20:41:35.446][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-19 20:41:35.447][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:35.448][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-12-19 20:41:35.449][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-19 20:41:35.450][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:35.451][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:35.452][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:35.453][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-19 20:41:35.454][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-19 20:41:35.455][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-19 20:41:35.456][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-19 20:41:35.457][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-19 20:41:35.458][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-19 20:41:35.459][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-19 20:41:35.460][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:35.461][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-19 20:41:35.462][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-19 20:41:35.463][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:35.464][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:35.465][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-12-19 20:41:35.467][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:35.468][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-12-19 20:41:35.469][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:35.470][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-19 20:41:35.471][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:35.472][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-19 20:41:35.473][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:35.474][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-19 20:41:35.475][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-19 20:41:35.477][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-19 20:41:35.478][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:35.479][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-12-19 20:41:35.480][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-19 20:41:35.481][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:35.482][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:35.483][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:35.499][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-19 20:41:35.500][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-19 20:41:35.502][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-19 20:41:35.503][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-19 20:41:35.504][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-19 20:41:35.505][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-19 20:41:35.506][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-19 20:41:35.507][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:35.508][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-19 20:41:35.509][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-19 20:41:35.509][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:35.510][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:35.512][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-19 20:41:35.513][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.515][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.519][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.524][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.532][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.537][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.541][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.545][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.549][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.553][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.557][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.561][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.569][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.573][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.577][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.581][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.585][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-12-19 20:41:35.586][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-12-19 20:41:35.588][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-12-19 20:41:35.589][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-12-19 20:41:35.590][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-12-19 20:41:35.591][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-12-19 20:41:35.597][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-12-19 20:41:35.598][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-12-19 20:41:35.599][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-12-19 20:41:35.601][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-12-19 20:41:35.602][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-12-19 20:41:35.603][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-12-19 20:41:35.604][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-12-19 20:41:35.606][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-12-19 20:41:35.607][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-12-19 20:41:35.608][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-12-19 20:41:35.609][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-12-19 20:41:35.611][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-12-19 20:41:35.612][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-12-19 20:41:35.613][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-12-19 20:41:35.615][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-12-19 20:41:35.616][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-12-19 20:41:35.617][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-12-19 20:41:35.618][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-12-19 20:41:35.620][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-12-19 20:41:35.621][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-12-19 20:41:35.622][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-12-19 20:41:35.623][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-12-19 20:41:35.625][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-12-19 20:41:35.626][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-12-19 20:41:35.627][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-12-19 20:41:35.629][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-12-19 20:41:35.630][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-12-19 20:41:35.631][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-12-19 20:41:35.632][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-12-19 20:41:35.634][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-12-19 20:41:35.635][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-12-19 20:41:35.636][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-12-19 20:41:35.637][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-12-19 20:41:35.639][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-12-19 20:41:35.640][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-12-19 20:41:35.641][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-12-19 20:41:35.642][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-12-19 20:41:35.644][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-12-19 20:41:35.645][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-12-19 20:41:35.646][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-12-19 20:41:35.648][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-12-19 20:41:35.649][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-12-19 20:41:35.650][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-12-19 20:41:35.651][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-12-19 20:41:35.653][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-12-19 20:41:35.654][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-12-19 20:41:35.655][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-12-19 20:41:35.656][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-12-19 20:41:35.658][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-12-19 20:41:35.659][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-12-19 20:41:35.660][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-12-19 20:41:35.661][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-12-19 20:41:35.663][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-12-19 20:41:35.664][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-12-19 20:41:35.665][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-12-19 20:41:35.666][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-12-19 20:41:35.668][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-12-19 20:41:35.669][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-12-19 20:41:35.670][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-12-19 20:41:35.671][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-12-19 20:41:35.673][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-12-19 20:41:35.674][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-12-19 20:41:35.675][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-12-19 20:41:35.676][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-12-19 20:41:35.678][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-12-19 20:41:35.679][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-12-19 20:41:35.680][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-12-19 20:41:35.682][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-12-19 20:41:35.683][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-12-19 20:41:35.684][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-12-19 20:41:35.690][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-12-19 20:41:35.691][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-12-19 20:41:35.693][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-12-19 20:41:35.694][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-12-19 20:41:35.695][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-12-19 20:41:35.696][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-12-19 20:41:35.697][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-12-19 20:41:35.699][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-12-19 20:41:35.700][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-12-19 20:41:35.701][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-19 20:41:35.702][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.704][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:35.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:35.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.711][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:35.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:35.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.717][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:35.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:35.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:35.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:35.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.728][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:35.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:35.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.733][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:35.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:35.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.739][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:35.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:35.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.745][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:35.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:35.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.750][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:35.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:35.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.756][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:35.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:35.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.761][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:35.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:35.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:35.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:35.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.773][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:35.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:35.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.783][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:35.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:35.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.788][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:35.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:35.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.794][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:35.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:35.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.800][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-19 20:41:35.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:35.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:35.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:35.806][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-12-19 20:41:35.807][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-12-19 20:41:35.809][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:35.810][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-12-19 20:41:35.811][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:35.812][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-19 20:41:35.813][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:35.814][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-12-19 20:41:35.815][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:35.816][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-19 20:41:35.817][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-19 20:41:35.818][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-19 20:41:35.818][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:35.819][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-12-19 20:41:35.820][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-19 20:41:35.821][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-12-19 20:41:35.821][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-12-19 20:41:35.821][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-12-19 20:41:35.821][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-12-19 20:41:35.821][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-12-19 20:41:35.821][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-12-19 20:41:35.821][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-12-19 20:41:35.821][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-12-19 20:41:35.821][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-12-19 20:41:35.821][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-12-19 20:41:35.821][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-12-19 20:41:35.821][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-12-19 20:41:35.821][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-12-19 20:41:35.821][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-12-19 20:41:35.821][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-12-19 20:41:35.821][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-12-19 20:41:35.821][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-12-19 20:41:35.821][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-12-19 20:41:35.822][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-19 20:41:35.823][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-19 20:41:35.823][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-12-19 20:41:35.823][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-12-19 20:41:35.824][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-12-19 20:41:35.825][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-19 20:41:35.826][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-19 20:41:35.827][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-19 20:41:35.828][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-19 20:41:35.829][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-19 20:41:35.829][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-19 20:41:35.830][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-12-19 20:41:35.830][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-12-19 20:41:35.831][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-19 20:41:35.832][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-19 20:41:35.833][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-19 20:41:35.834][self$setPropertyValue]
biodb.DEBUG[2024-12-19 20:41:35.835][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-12-19 20:41:35.836][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-12-19 20:41:35.838][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-12-19 20:41:35.839][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-12-19 20:41:35.841][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-12-19 20:41:35.844][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-12-19 20:41:35.845][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-12-19 20:41:35.846][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-12-19 20:41:35.847][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-12-19 20:41:35.849][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-19 20:41:35.849][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-19 20:41:35.851][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-12-19 20:41:35.852][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-12-19 20:41:35.853][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-12-19 20:41:35.853][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-12-19 20:41:35.854][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-19 20:41:35.854][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-19 20:41:35.855][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-12-19 20:41:35.856][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-12-19 20:41:35.857][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-12-19 20:41:35.858][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-12-19 20:41:35.859][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-19 20:41:35.860][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-19 20:41:35.862][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-12-19 20:41:35.863][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-19 20:41:35.864][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-12-19 20:41:35.865][biodb::testThat]
biodb.INFO [2024-12-19 20:41:35.866][biodb::testThat] Running test function test.searchMultipleWordsInDescription (" We can search for multiple words inside description field. ").
biodb.INFO [2024-12-19 20:41:35.867][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-19 20:41:35.868][biodb::testThat]
biodb.DEBUG[2024-12-19 20:41:35.870][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-12-19 20:41:35.870][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-12-19 20:41:35.871][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-12-19 20:41:35.874][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:35.880][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:35.881][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-12-19 20:41:35.883][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:35.883][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-12-19 20:41:35.885][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-12-19 20:41:35.885][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-12-19 20:41:35.886][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-12-19 20:41:35.887][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-12-19 20:41:35.888][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-12-19 20:41:35.889][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2024-12-19 20:41:35.891][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-12-19 20:41:35.892][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-12-19 20:41:35.893][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:35.894][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-12-19 20:41:35.896][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-12-19 20:41:35.897][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-19 20:41:35.899][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-12-19 20:41:35.900][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-12-19 20:41:35.901][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-12-19 20:41:35.902][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-12-19 20:41:35.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-19 20:41:35.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:35.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:35.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:35.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:35.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:35.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-19 20:41:35.916][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:35.917][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:35.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.918][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:35.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:35.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.923][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:35.924][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:35.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.926][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.927][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:35.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:35.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.931][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-19 20:41:35.932][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-19 20:41:35.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.934][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.935][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-19 20:41:35.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-19 20:41:35.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.939][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-12-19 20:41:35.940][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-12-19 20:41:35.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.941][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.943][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-12-19 20:41:35.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-12-19 20:41:35.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.946][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-19 20:41:35.947][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-19 20:41:35.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.949][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-19 20:41:35.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-19 20:41:35.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.954][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:35.955][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:35.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.957][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:35.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:35.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.961][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:35.962][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:35.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.964][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.965][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:35.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:35.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.969][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:35.970][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:35.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.972][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.973][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:35.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:35.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.981][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:35.982][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:35.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.984][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:35.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:35.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.989][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:35.990][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:35.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.991][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:35.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:35.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:35.996][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-19 20:41:35.997][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-19 20:41:35.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:35.999][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.000][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-19 20:41:36.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-19 20:41:36.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.004][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-19 20:41:36.005][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-19 20:41:36.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.007][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-19 20:41:36.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-19 20:41:36.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.011][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.012][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.014][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.019][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:36.020][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:36.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.022][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:36.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:36.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.026][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:36.027][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:36.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.029][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.030][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:36.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:36.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.034][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.035][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.036][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.038][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.041][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-19 20:41:36.042][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-19 20:41:36.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.044][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-19 20:41:36.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-19 20:41:36.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.049][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-12-19 20:41:36.050][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:36.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.051][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.053][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-12-19 20:41:36.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:36.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:36.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:36.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:36.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:36.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:36.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:36.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.067][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-19 20:41:36.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-19 20:41:36.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.080][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-19 20:41:36.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-19 20:41:36.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.084][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-19 20:41:36.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-19 20:41:36.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.088][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-12-19 20:41:36.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-12-19 20:41:36.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.091][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-12-19 20:41:36.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-12-19 20:41:36.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.095][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-12-19 20:41:36.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-12-19 20:41:36.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-19 20:41:36.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-19 20:41:36.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-19 20:41:36.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-19 20:41:36.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-19 20:41:36.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-19 20:41:36.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:36.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:36.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:36.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:36.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:36.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:36.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:36.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:36.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:36.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:36.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:36.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:36.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.131][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:36.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:36.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.134][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:36.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:36.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:36.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:36.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.142][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:36.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:36.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:36.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:36.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:36.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:36.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.155][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.158][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.162][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.165][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-19 20:41:36.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-19 20:41:36.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.169][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-19 20:41:36.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-19 20:41:36.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.173][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-19 20:41:36.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-19 20:41:36.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.181][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-19 20:41:36.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-19 20:41:36.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-19 20:41:36.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-19 20:41:36.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.189][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-19 20:41:36.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-19 20:41:36.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.203][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:36.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:36.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.207][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:36.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:36.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.210][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:36.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:36.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:36.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:36.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:36.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:36.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:36.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:36.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.225][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:36.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:36.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.228][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:36.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:36.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.232][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:36.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:36.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:36.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:36.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.239][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:36.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:36.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:36.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:36.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.246][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:36.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:36.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.250][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:36.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:36.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.253][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:36.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:36.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.257][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-19 20:41:36.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-19 20:41:36.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.261][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-19 20:41:36.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-19 20:41:36.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.264][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-19 20:41:36.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-19 20:41:36.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.268][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-12-19 20:41:36.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.287][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-12-19 20:41:36.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.292][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:36.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:36.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.295][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:36.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:36.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.299][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:36.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:36.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.302][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:36.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:36.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:36.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:36.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.310][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:36.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:36.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.313][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:36.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:36.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:36.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:36.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.321][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:36.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:36.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:36.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:36.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:36.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:36.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:36.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:36.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:36.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:36.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:36.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:36.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:36.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:36.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-19 20:41:36.346][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-12-19 20:41:36.347][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.350][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.354][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.357][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-19 20:41:36.361][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-12-19 20:41:36.362][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-12-19 20:41:36.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-19 20:41:36.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:36.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:36.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:36.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:36.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:36.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:36.376][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-12-19 20:41:36.377][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-12-19 20:41:36.379][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:36.381][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-12-19 20:41:36.383][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-12-19 20:41:36.384][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-19 20:41:36.385][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-12-19 20:41:36.386][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-12-19 20:41:36.387][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-12-19 20:41:36.388][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-12-19 20:41:36.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-19 20:41:36.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:36.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:36.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:36.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:36.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:36.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-19 20:41:36.401][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:36.402][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:36.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.404][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:36.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:36.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.408][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:36.409][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:36.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.411][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.412][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:36.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:36.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.416][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-19 20:41:36.417][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-19 20:41:36.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.419][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.420][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-19 20:41:36.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-19 20:41:36.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.424][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-12-19 20:41:36.425][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-12-19 20:41:36.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.426][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.428][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-12-19 20:41:36.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-12-19 20:41:36.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.431][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-19 20:41:36.432][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-19 20:41:36.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.434][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-19 20:41:36.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-19 20:41:36.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.439][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:36.440][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:36.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.442][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:36.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:36.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.447][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:36.448][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:36.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.449][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.451][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:36.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:36.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.454][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:36.455][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:36.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.457][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.458][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:36.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:36.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.462][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:36.463][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:36.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.464][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:36.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:36.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.469][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:36.470][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:36.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.472][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:36.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:36.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.482][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-19 20:41:36.483][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-19 20:41:36.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.485][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.486][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-19 20:41:36.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-19 20:41:36.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.490][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-19 20:41:36.490][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-19 20:41:36.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.492][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-19 20:41:36.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-19 20:41:36.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.497][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.498][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.500][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.505][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:36.506][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:36.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.507][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:36.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:36.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.512][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:36.513][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:36.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.515][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.516][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:36.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:36.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.520][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.521][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.522][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.523][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.527][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-19 20:41:36.528][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-19 20:41:36.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.530][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.531][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-19 20:41:36.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-19 20:41:36.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.535][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-12-19 20:41:36.536][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:36.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.537][ef$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.539][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-12-19 20:41:36.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:36.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:36.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:36.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:36.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:36.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:36.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:36.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.553][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-19 20:41:36.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-19 20:41:36.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.557][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-19 20:41:36.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-19 20:41:36.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.561][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-19 20:41:36.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-19 20:41:36.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.564][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-12-19 20:41:36.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-12-19 20:41:36.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.568][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-12-19 20:41:36.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-12-19 20:41:36.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.572][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-12-19 20:41:36.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-12-19 20:41:36.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-19 20:41:36.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-19 20:41:36.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-19 20:41:36.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-19 20:41:36.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-19 20:41:36.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-19 20:41:36.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:36.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:36.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:36.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:36.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:36.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-12-19 20:41:36.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:36.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:36.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:36.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:36.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:36.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-19 20:41:36.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:36.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:36.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:36.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:36.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:36.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-19 20:41:36.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.624][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:36.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:36.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:36.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:36.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.631][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:36.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-12-19 20:41:36.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.635][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.638][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.642][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.646][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-19 20:41:36.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-19 20:41:36.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.649][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-19 20:41:36.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-19 20:41:36.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.653][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-19 20:41:36.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-19 20:41:36.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.656][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-19 20:41:36.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-19 20:41:36.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-19 20:41:36.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-19 20:41:36.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-19 20:41:36.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-19 20:41:36.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.679][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.683][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:36.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:36.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.687][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:36.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:36.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.690][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:36.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-19 20:41:36.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:36.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:36.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:36.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:36.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:36.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-19 20:41:36.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.705][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:36.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:36.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.709][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:36.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:36.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.712][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:36.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:36.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:36.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:36.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:36.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:36.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:36.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-19 20:41:36.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.727][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:36.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:36.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.731][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:36.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:36.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.734][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:36.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-12-19 20:41:36.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.738][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-19 20:41:36.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-19 20:41:36.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.741][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-19 20:41:36.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-19 20:41:36.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.745][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-19 20:41:36.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-19 20:41:36.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.749][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-12-19 20:41:36.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.759][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.763][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-12-19 20:41:36.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-19 20:41:36.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.768][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:36.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:36.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.775][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:36.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:36.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.780][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:36.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:36.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.784][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:36.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:36.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.787][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-19 20:41:36.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-19 20:41:36.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.791][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:36.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:36.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.795][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:36.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:36.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:36.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:36.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.802][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:36.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-12-19 20:41:36.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:36.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:36.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:36.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:36.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:36.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:36.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:36.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:36.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:36.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:36.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-19 20:41:36.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-19 20:41:36.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-19 20:41:36.828][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-12-19 20:41:36.829][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.832][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.836][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.839][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-19 20:41:36.843][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-12-19 20:41:36.844][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2024-12-19 20:41:36.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-19 20:41:36.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:36.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:36.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:36.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:36.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:36.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:36.858][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-12-19 20:41:36.859][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-12-19 20:41:36.860][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-12-19 20:41:36.861][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:36.863][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:36.864][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-12-19 20:41:36.865][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:36.866][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-12-19 20:41:36.867][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-12-19 20:41:36.868][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-12-19 20:41:36.869][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-12-19 20:41:36.870][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-12-19 20:41:36.875][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-12-19 20:41:36.876][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-12-19 20:41:36.878][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.882][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.886][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.889][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.893][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.897][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.900][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-19 20:41:36.904][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-12-19 20:41:36.905][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-12-19 20:41:36.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-19 20:41:36.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:36.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:36.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:36.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:36.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:36.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-19 20:41:36.915][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.919][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.923][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.927][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.930][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.934][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.938][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-19 20:41:36.941][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-12-19 20:41:36.942][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-12-19 20:41:36.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-19 20:41:36.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:36.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:36.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:36.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:36.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:36.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-19 20:41:36.956][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-12-19 20:41:36.957][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-12-19 20:41:36.958][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-12-19 20:41:36.959][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:36.961][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:36.962][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-12-19 20:41:36.963][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-12-19 20:41:36.964][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-12-19 20:41:36.965][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-12-19 20:41:36.966][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-12-19 20:41:36.967][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-12-19 20:41:36.968][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-12-19 20:41:36.969][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-12-19 20:41:36.970][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-12-19 20:41:36.976][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.980][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.984][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.988][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.992][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.995][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:36.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:36.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:36.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:36.999][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:37.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:37.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:37.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-19 20:41:37.002][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-12-19 20:41:37.003][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2024-12-19 20:41:37.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-19 20:41:37.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:37.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:37.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:37.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:37.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:37.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-19 20:41:37.014][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:37.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:37.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:37.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:37.017][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:37.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:37.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:37.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:37.021][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:37.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:37.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:37.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:37.025][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:37.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:37.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:37.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:37.028][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:37.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:37.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:37.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:37.032][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:37.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:37.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:37.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-19 20:41:37.036][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-19 20:41:37.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-19 20:41:37.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-19 20:41:37.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-19 20:41:37.039][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-12-19 20:41:37.040][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-12-19 20:41:37.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-19 20:41:37.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:37.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:37.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:37.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:37.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:37.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-12-19 20:41:37.055][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-12-19 20:41:37.057][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-12-19 20:41:37.058][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-12-19 20:41:37.058][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-12-19 20:41:37.059][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-19 20:41:37.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-19 20:41:37.061][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-19 20:41:37.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-19 20:41:37.062][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-12-19 20:41:37.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
>
> proc.time()
user system elapsed
7.993 0.322 10.105