Pierrick Roger
| Snapshot Date: 2025-01-30 13:00 -0500 (Thu, 30 Jan 2025) |
| git_url: https://git.bioconductor.org/packages/biodbHmdb |
| git_branch: RELEASE_3_20 |
| git_last_commit: 0eb718c |
| git_last_commit_date: 2024-10-29 11:06:39 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-02-03 12:04 -0500 (Mon, 03 Feb 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4746 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4494 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4517 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4469 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4400 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 204/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbHmdb 1.12.0 (landing page) Pierrick Roger
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | ERROR | OK | |||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the biodbHmdb package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbHmdb |
| Version: 1.12.0 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings biodbHmdb_1.12.0.tar.gz |
| StartedAt: 2025-01-30 20:17:18 -0500 (Thu, 30 Jan 2025) |
| EndedAt: 2025-01-30 20:18:06 -0500 (Thu, 30 Jan 2025) |
| EllapsedTime: 48.1 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: biodbHmdb.Rcheck |
| Warnings: 2 |
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###
### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings biodbHmdb_1.12.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.12.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... WARNING
Found the following significant warnings:
EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
EntryMaker.hpp:22:14: warning: ‘bool EntryMaker::closed’ [-Wreorder]
EntryMaker.cpp:5:1: warning: when initialized here [-Wreorder]
See ‘/home/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
* checking installed package size ... NOTE
installed size is 7.2Mb
sub-directories of 1Mb or more:
libs 6.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 3 NOTEs
See
‘/home/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.
biodbHmdb.Rcheck/00install.out
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###
### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘biodbHmdb’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c EntryMaker.cpp -o EntryMaker.o
In file included from EntryMaker.cpp:1:
EntryMaker.hpp: In constructor ‘EntryMaker::EntryMaker()’:
EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
23 | TagDetector accession_tag;
| ^~~~~~~~~~~~~
EntryMaker.hpp:22:14: warning: ‘bool EntryMaker::closed’ [-Wreorder]
22 | bool closed;
| ^~~~~~
EntryMaker.cpp:5:1: warning: when initialized here [-Wreorder]
5 | EntryMaker::EntryMaker() :
| ^~~~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c FileEntryMaker.cpp -o FileEntryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c TagDetector.cpp -o TagDetector.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c XmlSplitter.cpp -o XmlSplitter.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c extractXmlEntries.cpp -o extractXmlEntries.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c test-100-TagDetector.cpp -o test-100-TagDetector.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.20-bioc/R/lib -L/usr/local/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -L/home/biocbuild/bbs-3.20-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package ‘biodbHmdb’
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)
biodbHmdb.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2025-01-30 20:17:48.467][biodb::testContext]
biodb.INFO [2025-01-30 20:17:48.469][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-30 20:17:48.470][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2025-01-30 20:17:48.471][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-30 20:17:48.472][biodb::testContext]
biodb.INFO [2025-01-30 20:17:48.474][biodb::testThat]
biodb.INFO [2025-01-30 20:17:48.474][biodb::testThat] Running test function test_extractXmlEntries (" extractXmlEntries() works fine. ").
biodb.INFO [2025-01-30 20:17:48.475][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-30 20:17:48.476][biodb::testThat]
biodb.INFO [2025-01-30 20:17:48.560][biodb::testContext]
biodb.INFO [2025-01-30 20:17:48.561][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-30 20:17:48.562][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-01-30 20:17:48.563][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-30 20:17:48.564][biodb::testContext]
biodb.INFO [2025-01-30 20:17:48.572][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-01-30 20:17:48.573][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-01-30 20:17:48.580][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-30 20:17:48.581][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-01-30 20:17:48.582][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-01-30 20:17:48.583][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.585][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-01-30 20:17:48.609][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-01-30 20:17:48.610][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.612][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-01-30 20:17:48.613][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-01-30 20:17:48.614][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.616][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-01-30 20:17:48.617][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-01-30 20:17:48.618][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-01-30 20:17:48.619][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.621][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-01-30 20:17:48.622][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-01-30 20:17:48.623][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-01-30 20:17:48.624][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.627][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-01-30 20:17:48.628][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-01-30 20:17:48.628][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.631][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-01-30 20:17:48.632][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-01-30 20:17:48.633][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-01-30 20:17:48.634][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.636][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-01-30 20:17:48.637][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-01-30 20:17:48.638][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.640][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-01-30 20:17:48.641][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-01-30 20:17:48.642][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-01-30 20:17:48.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.646][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-01-30 20:17:48.647][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-01-30 20:17:48.647][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-01-30 20:17:48.648][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-01-30 20:17:48.649][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-01-30 20:17:48.650][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-01-30 20:17:48.651][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.653][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-01-30 20:17:48.654][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-01-30 20:17:48.655][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.658][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-01-30 20:17:48.659][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-01-30 20:17:48.659][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.662][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-01-30 20:17:48.663][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-01-30 20:17:48.664][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.666][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-01-30 20:17:48.667][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-01-30 20:17:48.668][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.670][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-01-30 20:17:48.671][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-01-30 20:17:48.672][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.675][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-01-30 20:17:48.675][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-01-30 20:17:48.679][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-01-30 20:17:48.680][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.683][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-01-30 20:17:48.684][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-01-30 20:17:48.684][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-01-30 20:17:48.685][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.690][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-01-30 20:17:48.733][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:48.752][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-01-30 20:17:48.753][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:48.754][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-30 20:17:48.756][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:48.757][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-30 20:17:48.758][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:48.759][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-30 20:17:48.760][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-30 20:17:48.761][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-30 20:17:48.762][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:48.763][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-01-30 20:17:48.764][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-30 20:17:48.765][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:48.766][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:48.767][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-30 20:17:48.767][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-30 20:17:48.767][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-30 20:17:48.767][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-30 20:17:48.767][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-30 20:17:48.768][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-30 20:17:48.769][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-30 20:17:48.770][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-30 20:17:48.771][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-30 20:17:48.772][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-30 20:17:48.773][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-30 20:17:48.774][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-30 20:17:48.775][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:48.776][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-30 20:17:48.776][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-30 20:17:48.777][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:48.778][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:48.780][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-01-30 20:17:48.782][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:48.799][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-01-30 20:17:48.800][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:48.802][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-30 20:17:48.803][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:48.804][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-30 20:17:48.805][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:48.806][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-30 20:17:48.807][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-30 20:17:48.808][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-30 20:17:48.809][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:48.810][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-01-30 20:17:48.811][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-30 20:17:48.812][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:48.813][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:48.814][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-30 20:17:48.814][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-30 20:17:48.814][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-30 20:17:48.814][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-30 20:17:48.814][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-30 20:17:48.815][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-30 20:17:48.816][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-30 20:17:48.817][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-30 20:17:48.818][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-30 20:17:48.819][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-30 20:17:48.819][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-30 20:17:48.821][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-30 20:17:48.822][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:48.823][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-30 20:17:48.824][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-30 20:17:48.825][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:48.826][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:48.827][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-01-30 20:17:48.829][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:48.830][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-01-30 20:17:48.831][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:48.832][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-30 20:17:48.833][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:48.834][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-30 20:17:48.835][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:48.836][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-30 20:17:48.837][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-30 20:17:48.838][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-30 20:17:48.839][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:48.840][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-01-30 20:17:48.841][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-30 20:17:48.842][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:48.843][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:48.844][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:48.845][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-30 20:17:48.846][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-30 20:17:48.847][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-30 20:17:48.848][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-30 20:17:48.849][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-30 20:17:48.850][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-30 20:17:48.851][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-30 20:17:48.852][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:48.853][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-30 20:17:48.854][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-30 20:17:48.855][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:48.856][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:48.857][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-01-30 20:17:48.859][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:48.860][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-01-30 20:17:48.861][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:48.862][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-30 20:17:48.863][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:48.864][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-30 20:17:48.865][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:48.866][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-30 20:17:48.868][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-30 20:17:48.869][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-30 20:17:48.870][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:48.871][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-01-30 20:17:48.872][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-30 20:17:48.873][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:48.874][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:48.875][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:48.876][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-30 20:17:48.877][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-30 20:17:48.878][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-30 20:17:48.879][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-30 20:17:48.880][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-30 20:17:48.880][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-30 20:17:48.881][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-30 20:17:48.882][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:48.883][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-30 20:17:48.884][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-30 20:17:48.885][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:48.886][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:48.891][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-30 20:17:48.891][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.893][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:48.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:48.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.898][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:48.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:48.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.902][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:48.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:48.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.907][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:48.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:48.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.911][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:48.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:48.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.915][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:48.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:48.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.919][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:48.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:48.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.923][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:48.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:48.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.927][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:48.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:48.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.931][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:48.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:48.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.936][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:48.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:48.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.940][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:48.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:48.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:48.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:48.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.948][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:48.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:48.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.952][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:48.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:48.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.956][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:48.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:48.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.960][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:48.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:48.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:48.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:48.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:48.965][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-01-30 20:17:48.969][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-01-30 20:17:48.970][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-01-30 20:17:48.972][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-01-30 20:17:48.973][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-01-30 20:17:48.980][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-01-30 20:17:48.981][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-01-30 20:17:48.982][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-01-30 20:17:48.983][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-01-30 20:17:48.985][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-01-30 20:17:48.986][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-01-30 20:17:48.987][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-01-30 20:17:48.988][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-01-30 20:17:48.989][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-01-30 20:17:48.991][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-01-30 20:17:48.992][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-30 20:17:48.993][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-01-30 20:17:48.994][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-01-30 20:17:48.996][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-01-30 20:17:48.997][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-01-30 20:17:48.998][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-01-30 20:17:49.000][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-01-30 20:17:49.001][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-01-30 20:17:49.002][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-01-30 20:17:49.003][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-01-30 20:17:49.005][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-01-30 20:17:49.006][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-01-30 20:17:49.007][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-01-30 20:17:49.009][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-01-30 20:17:49.010][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-01-30 20:17:49.011][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-01-30 20:17:49.013][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-01-30 20:17:49.014][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-01-30 20:17:49.015][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-01-30 20:17:49.017][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-01-30 20:17:49.018][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-01-30 20:17:49.019][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-01-30 20:17:49.020][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-01-30 20:17:49.022][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-01-30 20:17:49.023][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-01-30 20:17:49.024][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-01-30 20:17:49.025][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-01-30 20:17:49.027][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-01-30 20:17:49.028][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-01-30 20:17:49.029][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-01-30 20:17:49.031][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-01-30 20:17:49.032][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-01-30 20:17:49.033][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-01-30 20:17:49.034][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-01-30 20:17:49.036][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-01-30 20:17:49.037][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-01-30 20:17:49.038][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-01-30 20:17:49.040][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-01-30 20:17:49.041][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-01-30 20:17:49.042][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-01-30 20:17:49.044][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-01-30 20:17:49.045][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-01-30 20:17:49.046][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-01-30 20:17:49.048][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-01-30 20:17:49.049][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-01-30 20:17:49.050][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-01-30 20:17:49.052][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-01-30 20:17:49.053][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-01-30 20:17:49.054][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-01-30 20:17:49.055][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-01-30 20:17:49.057][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-01-30 20:17:49.058][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-01-30 20:17:49.059][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-01-30 20:17:49.061][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-01-30 20:17:49.062][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-01-30 20:17:49.063][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-01-30 20:17:49.065][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-01-30 20:17:49.066][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-01-30 20:17:49.067][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-01-30 20:17:49.069][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-01-30 20:17:49.070][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-01-30 20:17:49.071][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-01-30 20:17:49.073][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-01-30 20:17:49.074][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-01-30 20:17:49.075][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-01-30 20:17:49.077][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-01-30 20:17:49.078][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-01-30 20:17:49.079][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-01-30 20:17:49.085][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-01-30 20:17:49.086][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-01-30 20:17:49.089][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-30 20:17:49.090][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:49.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:49.092][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:49.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:49.097][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:49.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:49.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:49.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:49.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:49.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:49.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:49.103][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:49.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:49.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:49.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:49.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:49.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:49.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:49.109][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:49.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:49.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:49.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:49.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:49.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:49.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:49.114][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:49.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:49.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:49.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:49.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:49.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:49.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:49.120][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:49.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:49.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:49.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:49.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:49.124][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:49.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:49.126][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:49.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:49.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:49.128][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:49.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:49.130][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:49.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:49.131][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:49.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:49.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:49.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:49.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:49.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:49.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:49.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:49.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:49.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:49.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:49.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:49.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:49.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:49.176][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:49.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:49.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:49.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:49.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:49.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:49.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:49.182][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:49.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:49.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:49.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:49.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:49.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:49.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:49.187][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:49.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:49.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:49.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:49.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:49.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:49.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:49.193][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:49.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:49.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:49.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:49.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:49.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:49.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:49.199][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:49.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:49.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:49.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:49.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:49.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:49.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:49.204][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:49.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:49.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:49.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:49.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:49.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:49.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:49.210][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:49.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:49.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:49.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:49.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:49.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:49.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:49.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:49.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:49.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:49.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:49.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:49.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:49.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:49.221][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:49.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:49.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:49.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:49.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:49.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:49.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:49.228][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-01-30 20:17:49.238][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-01-30 20:17:49.240][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:49.241][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-01-30 20:17:49.242][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:49.243][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-30 20:17:49.244][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:49.245][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-01-30 20:17:49.246][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:49.247][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-30 20:17:49.248][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-01-30 20:17:49.248][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-30 20:17:49.249][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:49.250][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-01-30 20:17:49.251][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-30 20:17:49.252][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-01-30 20:17:49.252][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-01-30 20:17:49.252][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-01-30 20:17:49.252][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-01-30 20:17:49.252][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-01-30 20:17:49.252][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-01-30 20:17:49.252][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-01-30 20:17:49.252][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-01-30 20:17:49.252][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-01-30 20:17:49.252][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-01-30 20:17:49.252][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-01-30 20:17:49.252][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-01-30 20:17:49.252][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-01-30 20:17:49.252][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-01-30 20:17:49.252][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-01-30 20:17:49.252][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-01-30 20:17:49.252][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-01-30 20:17:49.252][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-01-30 20:17:49.253][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:49.254][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-30 20:17:49.254][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-01-30 20:17:49.254][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-01-30 20:17:49.255][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-01-30 20:17:49.256][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-30 20:17:49.257][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-30 20:17:49.258][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-30 20:17:49.259][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-30 20:17:49.260][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-30 20:17:49.261][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-30 20:17:49.261][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-01-30 20:17:49.261][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-01-30 20:17:49.262][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-30 20:17:49.263][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-30 20:17:49.264][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:49.265][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:49.271][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-01-30 20:17:49.272][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-01-30 20:17:49.274][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-01-30 20:17:49.275][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-01-30 20:17:49.277][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-30 20:17:49.299][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-01-30 20:17:49.300][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-01-30 20:17:49.305][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-01-30 20:17:49.309][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-30 20:17:49.313][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-30 20:17:49.314][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-30 20:17:49.315][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-01-30 20:17:49.316][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-01-30 20:17:49.317][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-01-30 20:17:49.317][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-01-30 20:17:49.318][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-30 20:17:49.319][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-30 20:17:49.320][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-01-30 20:17:49.321][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-01-30 20:17:49.322][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-01-30 20:17:49.347][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-30 20:17:49.349][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-30 20:17:49.350][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-30 20:17:49.351][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-30 20:17:49.352][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-30 20:17:49.353][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-01-30 20:17:49.360][biodb::testThat]
biodb.INFO [2025-01-30 20:17:49.361][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2025-01-30 20:17:49.362][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-30 20:17:49.363][biodb::testThat]
biodb.TRACE[2025-01-30 20:17:49.367][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2025-01-30 20:17:49.369][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-01-30 20:17:49.372][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-01-30 20:17:49.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-30 20:17:49.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:49.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:49.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:49.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:49.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:49.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-30 20:17:49.398][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:49.399][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:49.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.401][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:49.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:49.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.419][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:49.420][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:49.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.422][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.448][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:49.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:49.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.453][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-30 20:17:49.454][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-30 20:17:49.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.456][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.458][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-30 20:17:49.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-30 20:17:49.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.462][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-30 20:17:49.463][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-30 20:17:49.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.465][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.466][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-30 20:17:49.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-30 20:17:49.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.470][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-30 20:17:49.471][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-30 20:17:49.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.473][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-30 20:17:49.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-30 20:17:49.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.479][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:49.480][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:49.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.481][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:49.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:49.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.486][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:49.487][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:49.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.489][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.491][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:49.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:49.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.495][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:49.495][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:49.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.497][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.506][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:49.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:49.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.510][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:49.511][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:49.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.513][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:49.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:49.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.518][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:49.519][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:49.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.520][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:49.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:49.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.525][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-30 20:17:49.526][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-30 20:17:49.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.528][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.529][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-30 20:17:49.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-30 20:17:49.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.534][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-30 20:17:49.535][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-30 20:17:49.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.536][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.538][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-30 20:17:49.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-30 20:17:49.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.542][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:49.543][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:49.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.545][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.547][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:49.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:49.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.551][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:49.552][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:49.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.554][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:49.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:49.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.559][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:49.560][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:49.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.561][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.563][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:49.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:49.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.566][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:49.567][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:49.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.569][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.570][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:49.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:49.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.574][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-30 20:17:49.575][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-30 20:17:49.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.577][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.578][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-30 20:17:49.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-30 20:17:49.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.582][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-01-30 20:17:49.583][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:49.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.585][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.586][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-01-30 20:17:49.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:49.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:49.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:49.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:49.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:49.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:49.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:49.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.634][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-30 20:17:49.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-30 20:17:49.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.643][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-30 20:17:49.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-30 20:17:49.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.646][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-30 20:17:49.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-30 20:17:49.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.650][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-30 20:17:49.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-30 20:17:49.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.654][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-30 20:17:49.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-30 20:17:49.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.657][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-30 20:17:49.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-30 20:17:49.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-30 20:17:49.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-30 20:17:49.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-30 20:17:49.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-30 20:17:49.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-30 20:17:49.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-30 20:17:49.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:49.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:49.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:49.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:49.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:49.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:49.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.684][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:49.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:49.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:49.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:49.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.692][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:49.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:49.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:49.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:49.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:49.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:49.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.704][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:49.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:49.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:49.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:49.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:49.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:49.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:49.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:49.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.719][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:49.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:49.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.723][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:49.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:49.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.727][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:49.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:49.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.731][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-30 20:17:49.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-30 20:17:49.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.734][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-30 20:17:49.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-30 20:17:49.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.738][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-30 20:17:49.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-30 20:17:49.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-30 20:17:49.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-30 20:17:49.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-30 20:17:49.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-30 20:17:49.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-30 20:17:49.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-30 20:17:49.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.755][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:49.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:49.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:49.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:49.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:49.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:49.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.766][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:49.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:49.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.771][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:49.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:49.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.775][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:49.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:49.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:49.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:49.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:49.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:49.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:49.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:49.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.794][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:49.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:49.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.798][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:49.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:49.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.801][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:49.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:49.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:49.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:49.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.809][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:49.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:49.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:49.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:49.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.817][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:49.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:49.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.820][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:49.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:49.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.824][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:49.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:49.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.828][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-30 20:17:49.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-30 20:17:49.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.832][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-30 20:17:49.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-30 20:17:49.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.835][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-30 20:17:49.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-30 20:17:49.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.839][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-30 20:17:49.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:49.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:49.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:49.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:49.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:49.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:49.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:49.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.854][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-30 20:17:49.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:49.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.877][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:49.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:49.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.881][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:49.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:49.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.885][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:49.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:49.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.888][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:49.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:49.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.892][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:49.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:49.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.896][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:49.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:49.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.900][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:49.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:49.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:49.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:49.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.907][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:49.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:49.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:49.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:49.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:49.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:49.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:49.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:49.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:49.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:49.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:49.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:49.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:49.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:49.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-30 20:17:49.937][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2025-01-30 20:17:49.939][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-30 20:17:49.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-30 20:17:49.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.943][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-30 20:17:49.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-30 20:17:49.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.947][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-30 20:17:49.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-30 20:17:49.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.950][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-30 20:17:49.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-30 20:17:49.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:49.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:49.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.976][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:49.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:49.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:49.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:49.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:49.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:49.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:49.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:49.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:49.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:49.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:49.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:49.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:50.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:50.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:50.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:50.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.008][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:50.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:50.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.012][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:50.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:50.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.016][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:50.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:50.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:50.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:50.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:50.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:50.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:50.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:50.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.039][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:50.040][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:50.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.041][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:50.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:50.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.054][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:50.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:50.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.058][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:50.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:50.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.062][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:50.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:50.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.071][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:50.072][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:50.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.074][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.075][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:50.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:50.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:50.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:50.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:50.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:50.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:50.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:50.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.097][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:50.098][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:50.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.100][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:50.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:50.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.113][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:50.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:50.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.117][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:50.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:50.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.121][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:50.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:50.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.125][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:50.126][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:50.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.128][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.129][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:50.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:50.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-30 20:17:50.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-30 20:17:50.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-30 20:17:50.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-30 20:17:50.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-30 20:17:50.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-30 20:17:50.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.152][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-30 20:17:50.153][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-30 20:17:50.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.154][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-30 20:17:50.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-30 20:17:50.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.166][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:50.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:50.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.170][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:50.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:50.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.174][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:50.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:50.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.178][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:50.179][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:50.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.181][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.181][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:50.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:50.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.192][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:50.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:50.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.196][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:50.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:50.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.200][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:50.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:50.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.204][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:50.205][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:50.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.211][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.212][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:50.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:50.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.223][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:50.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:50.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.227][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:50.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:50.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.231][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:50.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:50.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.234][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:50.235][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:50.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.237][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.238][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:50.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:50.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.250][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-30 20:17:50.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-30 20:17:50.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.254][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-30 20:17:50.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-30 20:17:50.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.258][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-30 20:17:50.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-30 20:17:50.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.261][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-30 20:17:50.262][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-30 20:17:50.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.264][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.265][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-30 20:17:50.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-30 20:17:50.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.276][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-30 20:17:50.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-30 20:17:50.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.279][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-30 20:17:50.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-30 20:17:50.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.283][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-30 20:17:50.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-30 20:17:50.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.287][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-30 20:17:50.288][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-30 20:17:50.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.290][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.291][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-30 20:17:50.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-30 20:17:50.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:50.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:50.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:50.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:50.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:50.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:50.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.313][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:50.314][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:50.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.316][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:50.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:50.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.327][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:50.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:50.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:50.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:50.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.335][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:50.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:50.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.339][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:50.340][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:50.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.341][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.342][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:50.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:50.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:50.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:50.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:50.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:50.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.368][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:50.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:50.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.372][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:50.373][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:50.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.374][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.375][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:50.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:50.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.387][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:50.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:50.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:50.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:50.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.395][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:50.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:50.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.399][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:50.400][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:50.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.402][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:50.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:50.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.414][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-30 20:17:50.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-30 20:17:50.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.418][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-30 20:17:50.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-30 20:17:50.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.422][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-30 20:17:50.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-30 20:17:50.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.426][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-30 20:17:50.427][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-30 20:17:50.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.429][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.430][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-30 20:17:50.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-30 20:17:50.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.443][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-30 20:17:50.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-30 20:17:50.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-30 20:17:50.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-30 20:17:50.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-30 20:17:50.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-30 20:17:50.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.455][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-30 20:17:50.456][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-30 20:17:50.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.457][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.458][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-30 20:17:50.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-30 20:17:50.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:50.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:50.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:50.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:50.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.476][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:50.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:50.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.480][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:50.481][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:50.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.483][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.483][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:50.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:50.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.498][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-30 20:17:50.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-30 20:17:50.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.502][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-30 20:17:50.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-30 20:17:50.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.506][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-30 20:17:50.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-30 20:17:50.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.509][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-30 20:17:50.510][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-30 20:17:50.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.512][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.513][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-30 20:17:50.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-30 20:17:50.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.523][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:50.524][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:50.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.526][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.530][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-30 20:17:50.531][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-30 20:17:50.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.533][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.537][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-30 20:17:50.538][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-30 20:17:50.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.540][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.544][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-30 20:17:50.545][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-30 20:17:50.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.546][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.550][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:50.551][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:50.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.553][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.557][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:50.558][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:50.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.560][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.564][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:50.565][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:50.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.567][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.571][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:50.572][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:50.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.573][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.577][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:50.578][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:50.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.580][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.584][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-30 20:17:50.585][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-30 20:17:50.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.587][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.591][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-30 20:17:50.592][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-30 20:17:50.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.593][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.597][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:50.598][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:50.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.600][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.604][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:50.605][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:50.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.607][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.610][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:50.611][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:50.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.613][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.617][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:50.618][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:50.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.620][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.628][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:50.629][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:50.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.631][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.635][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:50.636][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:50.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.638][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.642][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-30 20:17:50.643][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-30 20:17:50.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.645][ef$get] fields variable is a list.
biodb.INFO [2025-01-30 20:17:50.651][biodb::testThat]
biodb.INFO [2025-01-30 20:17:50.652][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-01-30 20:17:50.653][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-30 20:17:50.654][biodb::testThat]
biodb.DEBUG[2025-01-30 20:17:50.667][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-01-30 20:17:50.674][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-01-30 20:17:50.679][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:50.680][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-01-30 20:17:50.682][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-01-30 20:17:50.683][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-30 20:17:50.686][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-01-30 20:17:50.687][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-01-30 20:17:50.710][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-01-30 20:17:50.712][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-01-30 20:17:50.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-30 20:17:50.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:50.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:50.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:50.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:50.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:50.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-30 20:17:50.725][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:50.726][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:50.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.728][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:50.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:50.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.733][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:50.734][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:50.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.736][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.737][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:50.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:50.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.741][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-30 20:17:50.742][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-30 20:17:50.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.744][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.745][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-30 20:17:50.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-30 20:17:50.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.749][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-30 20:17:50.750][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-30 20:17:50.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.751][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.753][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-30 20:17:50.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-30 20:17:50.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.756][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-30 20:17:50.757][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-30 20:17:50.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.766][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-30 20:17:50.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-30 20:17:50.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.771][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:50.772][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:50.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.774][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:50.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:50.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.779][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:50.780][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:50.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.781][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.783][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:50.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:50.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.786][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:50.787][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:50.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.789][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.790][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:50.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:50.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.794][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:50.795][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:50.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.797][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:50.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:50.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.802][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:50.803][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:50.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.805][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:50.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:50.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.810][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-30 20:17:50.811][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-30 20:17:50.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.813][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.814][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-30 20:17:50.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-30 20:17:50.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.818][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-30 20:17:50.819][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-30 20:17:50.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.821][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.822][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-30 20:17:50.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-30 20:17:50.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.826][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:50.827][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:50.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.828][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.830][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:50.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:50.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.833][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:50.834][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:50.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.836][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:50.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:50.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.841][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:50.842][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:50.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.844][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.845][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:50.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:50.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.848][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:50.849][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:50.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.851][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.852][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:50.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:50.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.856][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-30 20:17:50.857][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-30 20:17:50.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.858][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.860][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-30 20:17:50.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-30 20:17:50.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.863][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-01-30 20:17:50.864][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:50.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.866][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.867][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-01-30 20:17:50.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:50.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:50.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:50.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:50.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:50.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:50.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:50.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.882][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-30 20:17:50.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-30 20:17:50.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.886][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-30 20:17:50.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-30 20:17:50.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.889][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-30 20:17:50.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-30 20:17:50.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.898][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-30 20:17:50.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-30 20:17:50.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.902][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-30 20:17:50.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-30 20:17:50.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.905][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-30 20:17:50.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-30 20:17:50.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-30 20:17:50.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-30 20:17:50.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-30 20:17:50.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-30 20:17:50.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-30 20:17:50.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-30 20:17:50.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:50.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:50.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:50.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:50.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:50.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:50.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:50.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:50.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:50.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:50.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.938][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:50.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:50.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.942][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:50.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:50.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.946][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:50.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:50.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.949][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:50.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:50.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:50.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:50.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.957][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:50.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:50.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:50.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:50.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.965][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:50.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:50.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.968][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:50.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:50.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.972][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:50.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:50.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.976][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-30 20:17:50.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-30 20:17:50.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.980][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-30 20:17:50.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-30 20:17:50.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.983][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-30 20:17:50.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-30 20:17:50.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-30 20:17:50.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-30 20:17:50.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-30 20:17:50.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-30 20:17:50.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-30 20:17:50.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-30 20:17:50.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:50.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:50.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:50.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:51.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:51.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:51.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.005][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:51.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:51.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.009][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:51.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:51.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.013][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:51.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:51.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.016][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:51.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:51.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:51.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:51.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:51.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:51.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:51.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:51.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:51.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:51.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.040][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:51.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:51.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.043][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:51.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:51.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.047][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:51.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:51.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.051][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:51.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:51.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.055][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:51.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:51.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.058][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:51.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:51.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.062][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:51.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:51.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.066][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:51.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:51.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.070][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-30 20:17:51.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-30 20:17:51.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.074][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-30 20:17:51.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-30 20:17:51.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.078][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-30 20:17:51.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-30 20:17:51.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.082][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-30 20:17:51.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:51.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:51.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:51.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:51.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:51.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:51.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:51.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.096][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-30 20:17:51.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:51.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.101][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:51.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:51.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.104][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:51.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:51.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.108][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:51.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:51.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.111][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:51.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:51.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.115][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:51.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:51.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.119][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:51.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:51.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.122][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:51.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:51.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:51.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:51.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.130][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:51.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:51.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:51.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:51.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:51.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:51.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:51.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:51.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:51.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:51.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:51.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:51.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:51.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:51.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-30 20:17:51.159][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-01-30 20:17:51.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-01-30 20:17:51.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-01-30 20:17:51.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-01-30 20:17:51.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-01-30 20:17:51.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-01-30 20:17:51.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-01-30 20:17:51.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-01-30 20:17:51.177][biodb::testThat]
biodb.INFO [2025-01-30 20:17:51.178][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2025-01-30 20:17:51.178][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-30 20:17:51.179][biodb::testThat]
biodb.TRACE[2025-01-30 20:17:51.182][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:51.183][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:51.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.185][ef$get] fields variable is a list.
biodb.DEBUG[2025-01-30 20:17:51.186][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2025-01-30 20:17:51.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:51.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:51.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.214][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:51.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:51.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.217][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:51.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:51.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-30 20:17:51.223][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2025-01-30 20:17:51.225][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-01-30 20:17:51.225][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-01-30 20:17:51.226][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-01-30 20:17:51.228][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:51.229][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:51.230][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-30 20:17:51.232][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:51.232][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-30 20:17:51.234][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-30 20:17:51.235][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-30 20:17:51.236][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-30 20:17:51.236][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-01-30 20:17:51.237][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-01-30 20:17:51.238][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-01-30 20:17:51.240][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:51.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:51.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.244][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:51.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:51.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.247][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:51.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:51.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.251][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:51.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:51.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-30 20:17:51.254][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-01-30 20:17:51.255][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-01-30 20:17:51.256][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-01-30 20:17:51.266][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:51.267][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:51.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.269][ef$get] fields variable is a list.
biodb.DEBUG[2025-01-30 20:17:51.270][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2025-01-30 20:17:51.284][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:51.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:51.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.288][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:51.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:51.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.291][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:51.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:51.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-30 20:17:51.297][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2025-01-30 20:17:51.347][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-01-30 20:17:51.348][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-01-30 20:17:51.349][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-01-30 20:17:51.361][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:51.363][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:51.364][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-30 20:17:51.365][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:51.366][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-30 20:17:51.380][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-30 20:17:51.382][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-30 20:17:51.382][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-30 20:17:51.383][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-01-30 20:17:51.384][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-01-30 20:17:51.389][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-01-30 20:17:51.391][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:51.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:51.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.394][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:51.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:51.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.398][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:51.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:51.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.401][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:51.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:51.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-30 20:17:51.405][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-01-30 20:17:51.406][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-01-30 20:17:51.407][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-01-30 20:17:51.417][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:51.418][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:51.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.420][ef$get] fields variable is a list.
biodb.DEBUG[2025-01-30 20:17:51.421][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2025-01-30 20:17:51.431][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:51.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:51.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.435][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:51.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:51.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.438][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:51.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:51.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-30 20:17:51.444][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2025-01-30 20:17:51.446][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2025-01-30 20:17:51.446][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-01-30 20:17:51.447][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-01-30 20:17:51.449][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:51.450][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:51.452][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-30 20:17:51.453][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:51.454][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-30 20:17:51.455][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-30 20:17:51.456][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-30 20:17:51.457][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-30 20:17:51.458][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-01-30 20:17:51.459][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-01-30 20:17:51.460][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-01-30 20:17:51.462][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:51.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:51.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.465][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:51.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:51.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.469][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:51.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:51.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.473][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:51.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:51.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-30 20:17:51.477][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-01-30 20:17:51.478][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-01-30 20:17:51.479][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2025-01-30 20:17:51.492][biodb::testThat]
biodb.INFO [2025-01-30 20:17:51.493][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2025-01-30 20:17:51.494][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-30 20:17:51.495][biodb::testThat]
biodb.TRACE[2025-01-30 20:17:51.504][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:51.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:51.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.508][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:51.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:51.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.512][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:51.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:51.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-30 20:17:51.529][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-01-30 20:17:51.530][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-01-30 20:17:51.531][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-01-30 20:17:51.533][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:51.534][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:51.535][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-30 20:17:51.537][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:51.538][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-30 20:17:51.539][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-30 20:17:51.540][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-30 20:17:51.541][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-30 20:17:51.541][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-01-30 20:17:51.542][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-01-30 20:17:51.543][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-01-30 20:17:51.545][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:51.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:51.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.549][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:51.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:51.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.552][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:51.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:51.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.556][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:51.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:51.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-30 20:17:51.560][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-01-30 20:17:51.561][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2025-01-30 20:17:51.574][biodb::testThat]
biodb.INFO [2025-01-30 20:17:51.575][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2025-01-30 20:17:51.576][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-30 20:17:51.576][biodb::testThat]
biodb.TRACE[2025-01-30 20:17:51.596][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-30 20:17:51.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-30 20:17:51.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.600][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-30 20:17:51.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-30 20:17:51.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.603][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-30 20:17:51.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-30 20:17:51.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.607][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-30 20:17:51.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-30 20:17:51.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.654][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-30 20:17:51.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-30 20:17:51.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.658][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-30 20:17:51.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-30 20:17:51.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.661][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-30 20:17:51.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-30 20:17:51.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:51.665][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-30 20:17:51.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-30 20:17:51.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:51.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-01-30 20:17:51.674][biodb::testThat]
biodb.INFO [2025-01-30 20:17:51.675][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-01-30 20:17:51.676][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-30 20:17:51.676][biodb::testThat]
biodb.INFO [2025-01-30 20:17:51.683][biodb::testThat]
biodb.INFO [2025-01-30 20:17:51.684][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-01-30 20:17:51.685][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-30 20:17:51.686][biodb::testThat]
biodb.INFO [2025-01-30 20:17:51.693][biodb::testThat]
biodb.INFO [2025-01-30 20:17:51.694][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2025-01-30 20:17:51.695][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-30 20:17:51.696][biodb::testThat]
biodb.DEBUG[2025-01-30 20:17:51.699][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2025-01-30 20:17:53.201][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2025-01-30 20:17:53.258][biodb::testThat]
biodb.INFO [2025-01-30 20:17:53.261][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2025-01-30 20:17:53.263][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-30 20:17:53.265][biodb::testThat]
biodb.DEBUG[2025-01-30 20:17:54.934][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2025-01-30 20:17:54.965][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:54.967][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:54.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:54.969][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:54.970][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:54.972][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:54.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:54.974][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:54.975][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:54.976][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:54.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:54.979][ef$get] fields variable is a list.
biodb.INFO [2025-01-30 20:17:54.981][biodb::testThat]
biodb.INFO [2025-01-30 20:17:54.982][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2025-01-30 20:17:54.984][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-30 20:17:54.985][biodb::testThat]
biodb.DEBUG[2025-01-30 20:17:54.988][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-01-30 20:17:55.062][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-01-30 20:17:55.064][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:55.065][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-01-30 20:17:55.082][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-01-30 20:17:55.084][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-30 20:17:55.085][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-30 20:17:55.086][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-01-30 20:17:55.087][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:55.088][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-01-30 20:17:55.089][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-01-30 20:17:55.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-30 20:17:55.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:55.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:55.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-30 20:17:55.102][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:55.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:55.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:55.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:55.106][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:55.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:55.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:55.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:55.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:55.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:55.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:55.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:55.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:55.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:55.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:55.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:55.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:55.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:55.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:55.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:55.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:55.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:55.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:55.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:55.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:55.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:55.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:55.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:55.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:55.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:55.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:55.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-30 20:17:55.166][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-01-30 20:17:55.167][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-01-30 20:17:55.183][biodb::testThat]
biodb.INFO [2025-01-30 20:17:55.184][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-01-30 20:17:55.185][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-30 20:17:55.186][biodb::testThat]
biodb.DEBUG[2025-01-30 20:17:55.193][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2025-01-30 20:17:55.194][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2025-01-30 20:17:55.195][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-01-30 20:17:55.197][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:55.198][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-01-30 20:17:55.200][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2025-01-30 20:17:55.201][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-30 20:17:55.202][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-30 20:17:55.203][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-01-30 20:17:55.205][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:55.206][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-01-30 20:17:55.207][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-01-30 20:17:55.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-30 20:17:55.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:55.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:55.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-30 20:17:55.219][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:55.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:55.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:55.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:55.223][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:55.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:55.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:55.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:55.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:55.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:55.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:55.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:55.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:55.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:55.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:55.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:55.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:55.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:55.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:55.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:55.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:55.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:55.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:55.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:55.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:55.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:55.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:55.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:55.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:55.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:55.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:55.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-30 20:17:55.250][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-01-30 20:17:55.250][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-01-30 20:17:55.251][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2025-01-30 20:17:55.263][biodb::testThat]
biodb.INFO [2025-01-30 20:17:55.264][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2025-01-30 20:17:55.265][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-30 20:17:55.265][biodb::testThat]
biodb.INFO [2025-01-30 20:17:55.291][biodb::testThat]
biodb.INFO [2025-01-30 20:17:55.292][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2025-01-30 20:17:55.293][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-30 20:17:55.294][biodb::testThat]
biodb.DEBUG[2025-01-30 20:17:55.296][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:55.298][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:55.299][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-30 20:17:55.300][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:55.301][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-30 20:17:55.302][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-30 20:17:55.303][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-30 20:17:55.304][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-30 20:17:55.305][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2025-01-30 20:17:55.312][biodb::testThat]
biodb.INFO [2025-01-30 20:17:55.313][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2025-01-30 20:17:55.314][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-30 20:17:55.315][biodb::testThat]
biodb.DEBUG[2025-01-30 20:17:55.317][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:55.318][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:55.320][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-30 20:17:55.321][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:55.322][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-30 20:17:55.323][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-30 20:17:55.324][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-30 20:17:55.325][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-30 20:17:55.326][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2025-01-30 20:17:55.333][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:55.335][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:55.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:55.336][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:55.337][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:55.338][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:55.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:55.340][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:55.341][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:55.342][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:55.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:55.343][ef$get] fields variable is a list.
biodb.INFO [2025-01-30 20:17:55.344][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-01-30 20:17:55.346][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-01-30 20:17:55.354][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-01-30 20:17:55.355][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-01-30 20:17:55.356][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:55.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:55.357][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.359][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-01-30 20:17:55.363][biodb::testContext]
biodb.INFO [2025-01-30 20:17:55.364][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-30 20:17:55.365][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2025-01-30 20:17:55.366][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-30 20:17:55.367][biodb::testContext]
biodb.INFO [2025-01-30 20:17:55.370][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-01-30 20:17:55.372][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-01-30 20:17:55.375][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-30 20:17:55.376][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-01-30 20:17:55.377][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-01-30 20:17:55.378][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.386][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-01-30 20:17:55.387][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-01-30 20:17:55.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.390][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-01-30 20:17:55.391][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-01-30 20:17:55.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.394][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-01-30 20:17:55.395][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-01-30 20:17:55.396][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-01-30 20:17:55.397][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.399][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-01-30 20:17:55.400][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-01-30 20:17:55.401][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-01-30 20:17:55.402][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.405][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-01-30 20:17:55.406][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-01-30 20:17:55.406][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.409][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-01-30 20:17:55.410][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-01-30 20:17:55.411][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-01-30 20:17:55.412][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.414][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-01-30 20:17:55.415][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-01-30 20:17:55.416][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.419][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-01-30 20:17:55.419][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-01-30 20:17:55.420][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-01-30 20:17:55.421][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.424][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-01-30 20:17:55.425][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-01-30 20:17:55.426][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-01-30 20:17:55.427][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-01-30 20:17:55.427][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-01-30 20:17:55.428][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-01-30 20:17:55.429][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.432][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-01-30 20:17:55.433][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-01-30 20:17:55.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.436][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-01-30 20:17:55.437][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-01-30 20:17:55.438][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.440][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-01-30 20:17:55.441][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-01-30 20:17:55.442][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.445][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-01-30 20:17:55.446][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-01-30 20:17:55.447][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.449][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-01-30 20:17:55.450][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-01-30 20:17:55.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.454][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-01-30 20:17:55.455][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-01-30 20:17:55.458][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-01-30 20:17:55.458][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.461][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-01-30 20:17:55.462][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-01-30 20:17:55.463][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-01-30 20:17:55.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.467][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-01-30 20:17:55.468][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:55.469][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-01-30 20:17:55.470][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:55.471][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-30 20:17:55.472][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:55.473][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-30 20:17:55.474][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:55.475][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-30 20:17:55.476][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-30 20:17:55.477][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-30 20:17:55.478][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:55.479][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-01-30 20:17:55.480][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-30 20:17:55.481][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:55.482][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:55.487][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-30 20:17:55.487][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-30 20:17:55.487][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-30 20:17:55.487][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-30 20:17:55.487][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-30 20:17:55.488][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-30 20:17:55.489][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-30 20:17:55.490][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-30 20:17:55.491][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-30 20:17:55.492][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-30 20:17:55.493][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-30 20:17:55.493][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-30 20:17:55.494][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:55.495][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-30 20:17:55.496][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-30 20:17:55.497][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:55.498][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:55.499][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-01-30 20:17:55.500][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:55.501][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-01-30 20:17:55.502][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:55.503][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-30 20:17:55.504][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:55.505][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-30 20:17:55.506][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:55.507][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-30 20:17:55.508][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-30 20:17:55.509][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-30 20:17:55.510][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:55.511][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-01-30 20:17:55.511][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-30 20:17:55.512][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:55.513][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:55.514][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-30 20:17:55.514][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-30 20:17:55.514][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-30 20:17:55.514][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-30 20:17:55.514][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-30 20:17:55.515][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-30 20:17:55.516][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-30 20:17:55.517][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-30 20:17:55.518][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-30 20:17:55.519][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-30 20:17:55.519][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-30 20:17:55.520][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-30 20:17:55.521][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:55.522][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-30 20:17:55.523][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-30 20:17:55.524][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:55.525][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:55.526][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-01-30 20:17:55.528][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:55.529][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-01-30 20:17:55.529][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:55.530][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-30 20:17:55.531][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:55.532][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-30 20:17:55.533][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:55.534][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-30 20:17:55.535][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-30 20:17:55.536][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-30 20:17:55.537][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:55.538][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-01-30 20:17:55.539][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-30 20:17:55.540][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:55.541][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:55.542][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:55.542][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-30 20:17:55.543][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-30 20:17:55.544][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-30 20:17:55.545][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-30 20:17:55.546][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-30 20:17:55.547][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-30 20:17:55.548][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-30 20:17:55.549][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:55.550][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-30 20:17:55.550][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-30 20:17:55.551][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:55.552][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:55.553][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-01-30 20:17:55.555][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:55.556][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-01-30 20:17:55.557][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:55.558][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-30 20:17:55.559][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:55.560][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-30 20:17:55.561][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:55.562][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-30 20:17:55.563][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-30 20:17:55.564][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-30 20:17:55.565][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:55.566][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-01-30 20:17:55.567][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-30 20:17:55.568][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:55.569][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:55.570][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:55.571][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-30 20:17:55.571][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-30 20:17:55.572][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-30 20:17:55.573][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-30 20:17:55.574][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-30 20:17:55.575][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-30 20:17:55.576][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-30 20:17:55.577][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:55.578][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-30 20:17:55.579][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-30 20:17:55.579][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:55.580][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:55.582][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-30 20:17:55.583][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.584][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.594][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.598][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.603][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.615][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.619][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.623][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.627][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.631][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.640][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.644][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.648][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.652][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.656][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.660][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-01-30 20:17:55.662][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-01-30 20:17:55.663][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-01-30 20:17:55.665][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-01-30 20:17:55.666][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-01-30 20:17:55.667][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-01-30 20:17:55.669][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-01-30 20:17:55.670][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-01-30 20:17:55.671][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-01-30 20:17:55.673][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-01-30 20:17:55.674][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-01-30 20:17:55.675][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-01-30 20:17:55.677][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-01-30 20:17:55.678][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-01-30 20:17:55.679][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-01-30 20:17:55.681][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-30 20:17:55.682][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-01-30 20:17:55.684][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-01-30 20:17:55.685][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-01-30 20:17:55.686][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-01-30 20:17:55.693][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-01-30 20:17:55.694][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-01-30 20:17:55.696][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-01-30 20:17:55.697][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-01-30 20:17:55.698][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-01-30 20:17:55.700][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-01-30 20:17:55.701][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-01-30 20:17:55.702][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-01-30 20:17:55.704][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-01-30 20:17:55.705][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-01-30 20:17:55.706][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-01-30 20:17:55.707][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-01-30 20:17:55.709][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-01-30 20:17:55.710][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-01-30 20:17:55.711][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-01-30 20:17:55.713][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-01-30 20:17:55.714][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-01-30 20:17:55.715][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-01-30 20:17:55.717][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-01-30 20:17:55.718][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-01-30 20:17:55.719][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-01-30 20:17:55.721][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-01-30 20:17:55.722][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-01-30 20:17:55.723][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-01-30 20:17:55.725][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-01-30 20:17:55.726][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-01-30 20:17:55.727][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-01-30 20:17:55.728][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-01-30 20:17:55.730][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-01-30 20:17:55.731][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-01-30 20:17:55.732][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-01-30 20:17:55.734][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-01-30 20:17:55.735][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-01-30 20:17:55.736][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-01-30 20:17:55.738][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-01-30 20:17:55.739][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-01-30 20:17:55.740][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-01-30 20:17:55.741][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-01-30 20:17:55.743][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-01-30 20:17:55.744][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-01-30 20:17:55.745][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-01-30 20:17:55.747][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-01-30 20:17:55.748][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-01-30 20:17:55.749][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-01-30 20:17:55.750][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-01-30 20:17:55.752][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-01-30 20:17:55.753][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-01-30 20:17:55.754][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-01-30 20:17:55.756][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-01-30 20:17:55.757][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-01-30 20:17:55.758][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-01-30 20:17:55.760][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-01-30 20:17:55.761][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-01-30 20:17:55.763][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-01-30 20:17:55.764][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-01-30 20:17:55.765][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-01-30 20:17:55.767][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-01-30 20:17:55.768][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-01-30 20:17:55.769][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-01-30 20:17:55.771][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-01-30 20:17:55.772][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-01-30 20:17:55.773][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-01-30 20:17:55.774][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-01-30 20:17:55.776][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-01-30 20:17:55.777][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-01-30 20:17:55.778][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-30 20:17:55.779][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.781][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:55.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:55.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.794][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:55.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:55.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.800][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:55.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:55.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.806][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:55.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:55.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.812][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:55.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:55.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.817][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:55.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:55.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.823][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:55.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:55.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.829][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:55.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:55.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:55.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:55.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.840][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:55.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:55.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:55.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:55.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.852][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:55.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:55.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:55.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:55.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.863][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:55.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:55.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.869][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:55.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:55.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.875][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:55.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:55.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.881][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:55.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:55.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:55.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:55.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:55.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:55.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:55.887][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-01-30 20:17:55.893][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-01-30 20:17:55.895][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:55.896][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-01-30 20:17:55.897][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:55.898][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-30 20:17:55.899][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:55.900][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-01-30 20:17:55.901][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:55.902][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-30 20:17:55.903][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-01-30 20:17:55.904][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-30 20:17:55.905][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:55.905][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-01-30 20:17:55.906][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-30 20:17:55.907][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-01-30 20:17:55.907][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-01-30 20:17:55.907][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-01-30 20:17:55.907][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-01-30 20:17:55.907][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-01-30 20:17:55.907][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-01-30 20:17:55.907][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-01-30 20:17:55.907][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-01-30 20:17:55.907][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-01-30 20:17:55.907][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-01-30 20:17:55.907][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-01-30 20:17:55.907][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-01-30 20:17:55.907][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-01-30 20:17:55.907][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-01-30 20:17:55.907][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-01-30 20:17:55.907][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-01-30 20:17:55.907][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-01-30 20:17:55.907][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-01-30 20:17:55.908][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:55.909][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-30 20:17:55.909][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-01-30 20:17:55.909][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-01-30 20:17:55.910][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-01-30 20:17:55.911][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-30 20:17:55.912][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-30 20:17:55.913][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-30 20:17:55.914][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-30 20:17:55.915][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-30 20:17:55.915][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-30 20:17:55.916][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-01-30 20:17:55.916][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-01-30 20:17:55.917][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-30 20:17:55.918][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-30 20:17:55.919][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:55.920][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:55.921][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-01-30 20:17:55.923][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-01-30 20:17:55.924][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-01-30 20:17:55.926][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-01-30 20:17:55.927][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-30 20:17:55.930][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-01-30 20:17:55.931][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-01-30 20:17:55.932][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-01-30 20:17:55.933][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-30 20:17:55.935][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-30 20:17:55.936][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-30 20:17:55.937][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-01-30 20:17:55.938][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-01-30 20:17:55.939][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-01-30 20:17:55.939][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-01-30 20:17:55.940][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-30 20:17:55.940][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-30 20:17:55.941][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-01-30 20:17:55.942][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-01-30 20:17:55.943][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-01-30 20:17:55.944][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-30 20:17:55.945][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-30 20:17:55.946][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-30 20:17:55.948][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-30 20:17:55.949][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-30 20:17:55.950][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-01-30 20:17:55.951][biodb::testThat]
biodb.INFO [2025-01-30 20:17:55.952][biodb::testThat] Running test function test.hmdbmetabolite.nbentries (" HMDB metabolite returns enough entries. ").
biodb.INFO [2025-01-30 20:17:55.953][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-30 20:17:55.954][biodb::testThat]
biodb.DEBUG[2025-01-30 20:17:55.957][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:55.959][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:55.960][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-30 20:17:55.962][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:55.963][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-30 20:17:55.964][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-30 20:17:55.965][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-30 20:17:55.966][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-30 20:17:55.967][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-01-30 20:17:55.970][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-01-30 20:17:55.974][biodb::testThat]
biodb.INFO [2025-01-30 20:17:55.975][biodb::testThat] Running test function test.old.accession (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2025-01-30 20:17:55.976][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-30 20:17:55.977][biodb::testThat]
biodb.DEBUG[2025-01-30 20:17:55.979][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-01-30 20:17:55.980][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-01-30 20:17:55.981][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:55.983][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-01-30 20:17:55.985][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-01-30 20:17:55.986][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-30 20:17:56.007][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-01-30 20:17:56.008][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-01-30 20:17:56.009][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-01-30 20:17:56.011][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-01-30 20:17:56.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-30 20:17:56.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:56.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:56.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:56.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:56.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-30 20:17:56.029][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:56.030][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:56.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.032][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:56.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:56.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.037][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:56.038][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:56.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.040][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.041][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:56.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:56.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.045][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-30 20:17:56.046][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-30 20:17:56.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.047][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.049][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-30 20:17:56.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-30 20:17:56.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.053][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-30 20:17:56.054][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-30 20:17:56.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.055][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.057][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-30 20:17:56.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-30 20:17:56.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.060][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-30 20:17:56.061][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-30 20:17:56.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.063][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-30 20:17:56.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-30 20:17:56.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.068][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:56.069][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:56.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.071][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:56.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:56.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.076][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:56.077][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:56.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.079][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.080][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:56.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:56.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.084][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:56.085][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:56.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.087][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:56.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:56.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.092][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:56.093][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:56.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.095][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:56.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:56.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.100][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:56.101][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:56.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.103][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:56.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:56.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.108][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-30 20:17:56.109][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-30 20:17:56.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.111][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.112][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-30 20:17:56.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-30 20:17:56.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.116][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-30 20:17:56.117][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-30 20:17:56.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.118][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-30 20:17:56.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-30 20:17:56.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.128][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:56.129][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:56.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.131][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:56.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:56.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.136][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:56.137][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:56.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.139][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:56.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:56.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.144][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:56.145][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:56.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.146][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.148][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:56.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:56.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.151][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:56.152][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:56.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.154][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.155][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:56.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:56.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.159][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-30 20:17:56.160][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-30 20:17:56.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.162][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.163][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-30 20:17:56.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-30 20:17:56.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.167][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-01-30 20:17:56.168][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:56.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.169][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.171][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-01-30 20:17:56.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:56.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:56.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:56.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:56.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:56.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:56.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:56.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.186][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-30 20:17:56.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-30 20:17:56.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.195][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-30 20:17:56.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-30 20:17:56.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.201][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-30 20:17:56.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-30 20:17:56.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.206][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-30 20:17:56.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-30 20:17:56.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.212][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-30 20:17:56.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-30 20:17:56.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.217][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-30 20:17:56.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-30 20:17:56.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-30 20:17:56.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-30 20:17:56.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-30 20:17:56.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-30 20:17:56.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-30 20:17:56.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-30 20:17:56.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:56.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:56.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:56.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:56.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:56.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:56.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.267][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:56.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:56.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.271][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:56.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:56.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:56.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:56.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:56.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:56.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:56.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:56.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:56.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:56.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:56.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:56.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:56.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:56.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:56.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:56.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.304][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:56.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:56.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.308][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:56.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:56.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.312][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:56.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:56.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.316][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-30 20:17:56.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-30 20:17:56.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.320][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-30 20:17:56.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-30 20:17:56.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.324][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-30 20:17:56.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-30 20:17:56.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.328][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-30 20:17:56.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-30 20:17:56.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-30 20:17:56.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-30 20:17:56.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-30 20:17:56.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-30 20:17:56.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.339][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:56.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:56.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.343][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:56.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:56.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:56.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:56.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.351][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:56.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:56.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.355][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:56.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:56.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.358][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:56.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:56.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:56.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:56.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:56.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:56.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:56.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:56.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.378][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:56.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:56.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.382][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:56.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:56.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.385][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:56.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:56.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.389][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:56.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:56.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.393][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:56.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:56.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.397][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:56.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:56.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.400][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:56.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:56.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.404][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:56.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:56.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.408][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:56.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:56.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.411][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-30 20:17:56.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-30 20:17:56.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.415][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-30 20:17:56.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-30 20:17:56.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.418][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-30 20:17:56.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-30 20:17:56.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.422][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-30 20:17:56.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:56.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:56.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:56.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.429][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:56.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:56.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:56.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:56.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.437][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-30 20:17:56.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:56.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.442][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:56.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:56.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.446][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:56.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:56.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.449][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:56.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:56.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.453][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:56.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:56.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.456][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:56.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:56.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.460][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:56.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:56.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.469][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:56.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:56.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:56.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:56.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.476][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:56.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:56.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:56.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:56.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:56.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:56.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:56.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:56.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:56.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:56.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:56.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:56.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:56.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:56.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-30 20:17:56.502][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-01-30 20:17:56.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:56.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:56.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:56.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:56.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:56.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:56.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:56.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:56.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-01-30 20:17:56.520][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-01-30 20:17:56.521][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-01-30 20:17:56.522][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-01-30 20:17:56.523][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-01-30 20:17:56.523][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:56.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:56.525][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:56.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:56.527][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-01-30 20:17:56.531][biodb::testContext]
biodb.INFO [2025-01-30 20:17:56.532][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-30 20:17:56.533][biodb::testContext] Test context - Test search of entries
biodb.INFO [2025-01-30 20:17:56.534][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-30 20:17:56.535][biodb::testContext]
biodb.INFO [2025-01-30 20:17:56.539][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-01-30 20:17:56.540][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-01-30 20:17:56.544][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-30 20:17:56.545][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-01-30 20:17:56.546][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-01-30 20:17:56.547][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.549][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-01-30 20:17:56.550][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-01-30 20:17:56.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.554][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-01-30 20:17:56.555][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-01-30 20:17:56.556][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.558][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-01-30 20:17:56.559][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-01-30 20:17:56.560][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-01-30 20:17:56.561][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.563][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-01-30 20:17:56.564][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-01-30 20:17:56.565][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-01-30 20:17:56.566][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.574][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-01-30 20:17:56.575][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-01-30 20:17:56.576][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.579][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-01-30 20:17:56.580][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-01-30 20:17:56.581][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-01-30 20:17:56.581][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.584][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-01-30 20:17:56.585][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-01-30 20:17:56.586][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.588][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-01-30 20:17:56.589][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-01-30 20:17:56.590][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-01-30 20:17:56.591][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.593][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-01-30 20:17:56.594][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-01-30 20:17:56.595][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-01-30 20:17:56.596][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-01-30 20:17:56.597][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-01-30 20:17:56.598][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-01-30 20:17:56.599][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.601][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-01-30 20:17:56.602][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-01-30 20:17:56.603][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.605][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-01-30 20:17:56.606][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-01-30 20:17:56.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.610][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-01-30 20:17:56.611][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-01-30 20:17:56.612][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.614][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-01-30 20:17:56.615][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-01-30 20:17:56.616][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.618][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-01-30 20:17:56.619][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-01-30 20:17:56.620][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.623][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-01-30 20:17:56.623][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-01-30 20:17:56.627][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-01-30 20:17:56.628][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.630][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-01-30 20:17:56.631][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-01-30 20:17:56.632][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-01-30 20:17:56.633][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.636][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-01-30 20:17:56.637][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:56.638][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-01-30 20:17:56.639][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:56.640][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-30 20:17:56.641][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:56.642][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-30 20:17:56.643][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:56.644][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-30 20:17:56.645][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-30 20:17:56.646][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-30 20:17:56.647][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:56.648][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-01-30 20:17:56.649][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-30 20:17:56.649][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:56.650][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:56.651][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-30 20:17:56.651][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-30 20:17:56.651][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-30 20:17:56.651][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-30 20:17:56.651][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-30 20:17:56.652][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-30 20:17:56.653][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-30 20:17:56.654][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-30 20:17:56.655][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-30 20:17:56.656][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-30 20:17:56.657][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-30 20:17:56.658][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-30 20:17:56.659][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:56.659][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-30 20:17:56.660][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-30 20:17:56.661][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:56.662][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:56.663][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-01-30 20:17:56.665][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:56.666][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-01-30 20:17:56.667][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:56.672][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-30 20:17:56.673][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:56.674][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-30 20:17:56.675][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:56.676][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-30 20:17:56.677][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-30 20:17:56.678][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-30 20:17:56.679][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:56.680][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-01-30 20:17:56.681][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-30 20:17:56.682][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:56.682][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:56.683][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-30 20:17:56.683][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-30 20:17:56.683][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-30 20:17:56.683][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-30 20:17:56.683][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-30 20:17:56.684][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-30 20:17:56.685][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-30 20:17:56.686][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-30 20:17:56.687][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-30 20:17:56.688][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-30 20:17:56.689][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-30 20:17:56.689][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-30 20:17:56.690][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:56.691][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-30 20:17:56.692][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-30 20:17:56.693][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:56.694][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:56.695][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-01-30 20:17:56.697][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:56.698][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-01-30 20:17:56.698][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:56.699][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-30 20:17:56.700][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:56.701][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-30 20:17:56.702][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:56.703][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-30 20:17:56.704][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-30 20:17:56.705][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-30 20:17:56.706][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:56.707][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-01-30 20:17:56.708][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-30 20:17:56.708][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:56.709][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:56.710][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:56.711][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-30 20:17:56.712][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-30 20:17:56.713][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-30 20:17:56.714][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-30 20:17:56.715][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-30 20:17:56.716][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-30 20:17:56.716][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-30 20:17:56.717][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:56.718][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-30 20:17:56.719][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-30 20:17:56.720][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:56.721][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:56.722][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-01-30 20:17:56.724][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:56.724][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-01-30 20:17:56.725][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:56.726][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-30 20:17:56.727][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:56.728][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-30 20:17:56.729][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:56.730][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-30 20:17:56.731][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-30 20:17:56.732][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-30 20:17:56.733][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:56.734][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-01-30 20:17:56.734][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-30 20:17:56.735][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:56.736][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:56.737][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:56.738][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-30 20:17:56.739][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-30 20:17:56.740][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-30 20:17:56.741][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-30 20:17:56.742][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-30 20:17:56.742][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-30 20:17:56.743][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-30 20:17:56.744][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:56.745][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-30 20:17:56.747][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-30 20:17:56.748][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:56.748][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:56.750][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-30 20:17:56.750][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.752][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:56.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:56.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.756][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:56.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:56.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.760][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:56.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:56.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.764][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:56.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:56.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.774][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:56.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:56.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.778][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:56.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:56.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:56.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:56.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.786][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:56.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:56.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.791][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:56.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:56.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.795][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:56.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:56.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.799][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:56.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:56.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.803][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:56.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:56.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.807][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:56.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:56.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.811][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:56.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:56.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.816][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:56.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:56.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.820][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:56.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:56.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.824][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:56.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:56.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.828][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-01-30 20:17:56.830][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-01-30 20:17:56.831][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-01-30 20:17:56.832][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-01-30 20:17:56.834][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-01-30 20:17:56.835][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-01-30 20:17:56.836][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-01-30 20:17:56.838][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-01-30 20:17:56.839][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-01-30 20:17:56.840][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-01-30 20:17:56.841][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-01-30 20:17:56.843][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-01-30 20:17:56.844][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-01-30 20:17:56.845][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-01-30 20:17:56.847][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-01-30 20:17:56.848][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-30 20:17:56.849][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-01-30 20:17:56.850][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-01-30 20:17:56.852][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-01-30 20:17:56.853][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-01-30 20:17:56.854][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-01-30 20:17:56.856][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-01-30 20:17:56.857][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-01-30 20:17:56.858][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-01-30 20:17:56.860][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-01-30 20:17:56.861][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-01-30 20:17:56.866][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-01-30 20:17:56.868][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-01-30 20:17:56.870][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-01-30 20:17:56.871][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-01-30 20:17:56.872][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-01-30 20:17:56.874][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-01-30 20:17:56.875][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-01-30 20:17:56.876][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-01-30 20:17:56.877][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-01-30 20:17:56.879][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-01-30 20:17:56.880][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-01-30 20:17:56.881][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-01-30 20:17:56.882][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-01-30 20:17:56.884][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-01-30 20:17:56.885][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-01-30 20:17:56.886][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-01-30 20:17:56.887][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-01-30 20:17:56.889][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-01-30 20:17:56.890][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-01-30 20:17:56.891][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-01-30 20:17:56.893][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-01-30 20:17:56.894][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-01-30 20:17:56.895][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-01-30 20:17:56.897][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-01-30 20:17:56.898][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-01-30 20:17:56.899][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-01-30 20:17:56.900][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-01-30 20:17:56.902][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-01-30 20:17:56.903][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-01-30 20:17:56.904][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-01-30 20:17:56.906][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-01-30 20:17:56.907][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-01-30 20:17:56.908][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-01-30 20:17:56.909][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-01-30 20:17:56.911][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-01-30 20:17:56.912][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-01-30 20:17:56.913][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-01-30 20:17:56.915][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-01-30 20:17:56.916][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-01-30 20:17:56.917][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-01-30 20:17:56.918][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-01-30 20:17:56.920][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-01-30 20:17:56.921][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-01-30 20:17:56.922][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-01-30 20:17:56.924][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-01-30 20:17:56.925][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-01-30 20:17:56.926][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-01-30 20:17:56.927][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-01-30 20:17:56.929][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-01-30 20:17:56.930][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-01-30 20:17:56.931][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-01-30 20:17:56.933][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-01-30 20:17:56.934][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-01-30 20:17:56.935][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-01-30 20:17:56.937][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-01-30 20:17:56.938][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-01-30 20:17:56.939][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-01-30 20:17:56.941][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-01-30 20:17:56.942][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-01-30 20:17:56.943][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-30 20:17:56.944][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:56.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:56.945][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.947][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:56.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:56.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:56.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:56.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.953][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:56.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:56.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:56.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:56.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.964][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:56.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:56.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:56.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:56.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.969][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:56.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:56.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:56.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:56.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.975][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:56.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:56.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:56.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:56.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.980][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:56.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:56.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:56.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:56.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.986][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:56.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:56.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:56.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:56.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.992][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:56.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:56.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:56.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:56.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:56.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:56.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:56.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:56.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:57.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:57.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:57.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:57.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:57.003][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:57.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:57.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:57.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:57.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:57.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:57.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:57.009][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:57.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:57.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:57.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:57.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:57.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:57.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:57.015][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:57.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:57.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:57.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:57.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:57.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:57.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:57.020][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:57.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:57.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:57.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:57.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:57.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:57.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:57.026][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:57.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:57.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:57.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:57.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:57.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:57.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:57.032][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:57.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:57.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:57.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:57.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:57.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:57.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:57.037][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:57.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:57.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:57.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:57.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:57.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:57.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:57.043][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-30 20:17:57.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:57.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:57.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:57.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:57.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:57.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:57.049][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-01-30 20:17:57.051][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-01-30 20:17:57.057][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:57.058][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-01-30 20:17:57.059][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:57.060][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-30 20:17:57.061][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:57.062][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-01-30 20:17:57.063][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:57.064][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-30 20:17:57.065][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-01-30 20:17:57.065][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-30 20:17:57.066][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:57.067][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-01-30 20:17:57.068][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-30 20:17:57.069][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-01-30 20:17:57.069][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-01-30 20:17:57.069][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-01-30 20:17:57.069][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-01-30 20:17:57.069][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-01-30 20:17:57.069][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-01-30 20:17:57.069][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-01-30 20:17:57.069][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-01-30 20:17:57.069][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-01-30 20:17:57.069][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-01-30 20:17:57.069][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-01-30 20:17:57.069][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-01-30 20:17:57.069][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-01-30 20:17:57.069][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-01-30 20:17:57.069][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-01-30 20:17:57.069][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-01-30 20:17:57.069][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-01-30 20:17:57.069][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-01-30 20:17:57.070][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-01-30 20:17:57.071][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-30 20:17:57.071][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-01-30 20:17:57.071][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-01-30 20:17:57.072][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-01-30 20:17:57.073][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-30 20:17:57.074][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-30 20:17:57.074][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-30 20:17:57.075][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-30 20:17:57.076][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-30 20:17:57.077][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-30 20:17:57.078][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-01-30 20:17:57.078][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-01-30 20:17:57.079][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-30 20:17:57.080][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-30 20:17:57.081][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-01-30 20:17:57.081][self$setPropertyValue]
biodb.DEBUG[2025-01-30 20:17:57.083][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-01-30 20:17:57.084][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-01-30 20:17:57.086][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-01-30 20:17:57.087][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-01-30 20:17:57.088][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-30 20:17:57.091][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-01-30 20:17:57.092][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-01-30 20:17:57.093][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-01-30 20:17:57.095][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-30 20:17:57.096][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-30 20:17:57.097][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-30 20:17:57.098][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-01-30 20:17:57.099][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-01-30 20:17:57.100][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-01-30 20:17:57.100][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-01-30 20:17:57.101][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-30 20:17:57.102][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-30 20:17:57.102][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-01-30 20:17:57.103][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-01-30 20:17:57.104][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-01-30 20:17:57.106][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-30 20:17:57.107][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-30 20:17:57.108][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-30 20:17:57.109][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-01-30 20:17:57.110][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-30 20:17:57.111][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-01-30 20:17:57.112][biodb::testThat]
biodb.INFO [2025-01-30 20:17:57.113][biodb::testThat] Running test function test.searchMultipleWordsInDescription (" We can search for multiple words inside description field. ").
biodb.INFO [2025-01-30 20:17:57.114][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-30 20:17:57.115][biodb::testThat]
biodb.DEBUG[2025-01-30 20:17:57.117][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-01-30 20:17:57.118][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-01-30 20:17:57.118][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-01-30 20:17:57.121][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:57.123][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:57.124][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-30 20:17:57.125][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:57.126][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-30 20:17:57.127][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-30 20:17:57.128][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-30 20:17:57.129][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-30 20:17:57.130][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-01-30 20:17:57.131][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-01-30 20:17:57.132][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2025-01-30 20:17:57.134][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-01-30 20:17:57.135][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-01-30 20:17:57.136][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:57.138][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-01-30 20:17:57.139][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-01-30 20:17:57.140][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-30 20:17:57.142][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-01-30 20:17:57.143][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-01-30 20:17:57.144][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-01-30 20:17:57.146][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-01-30 20:17:57.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-30 20:17:57.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:57.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:57.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:57.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:57.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:57.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-30 20:17:57.164][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:57.165][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:57.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.167][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:57.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:57.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.172][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:57.173][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:57.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.175][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.176][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:57.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:57.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.180][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-30 20:17:57.181][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-30 20:17:57.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.182][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.184][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-30 20:17:57.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-30 20:17:57.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.188][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-30 20:17:57.189][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-30 20:17:57.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.190][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.192][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-30 20:17:57.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-30 20:17:57.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.196][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-30 20:17:57.197][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-30 20:17:57.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.198][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-30 20:17:57.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-30 20:17:57.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.203][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:57.204][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:57.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.206][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:57.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:57.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.211][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:57.212][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:57.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.214][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.215][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:57.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:57.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.219][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:57.220][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:57.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.221][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.223][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:57.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:57.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.226][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:57.227][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:57.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.229][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:57.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:57.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.234][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:57.235][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:57.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.237][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:57.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:57.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.242][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-30 20:17:57.243][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-30 20:17:57.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.244][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.245][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-30 20:17:57.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-30 20:17:57.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.249][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-30 20:17:57.250][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-30 20:17:57.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.252][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-30 20:17:57.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-30 20:17:57.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.262][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:57.263][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:57.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.264][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:57.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:57.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.269][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:57.270][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:57.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.272][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:57.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:57.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.277][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:57.278][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:57.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.280][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.281][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:57.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:57.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.285][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:57.285][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:57.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.287][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.288][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:57.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:57.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.292][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-30 20:17:57.293][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-30 20:17:57.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.295][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.296][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-30 20:17:57.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-30 20:17:57.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.300][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-01-30 20:17:57.301][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:57.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.303][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.304][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-01-30 20:17:57.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:57.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:57.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:57.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:57.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:57.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:57.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:57.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.319][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-30 20:17:57.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-30 20:17:57.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.323][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-30 20:17:57.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-30 20:17:57.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.326][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-30 20:17:57.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-30 20:17:57.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.330][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-30 20:17:57.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-30 20:17:57.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.334][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-30 20:17:57.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-30 20:17:57.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.338][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-30 20:17:57.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-30 20:17:57.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-30 20:17:57.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-30 20:17:57.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-30 20:17:57.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-30 20:17:57.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-30 20:17:57.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-30 20:17:57.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:57.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:57.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:57.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:57.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:57.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:57.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:57.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:57.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:57.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:57.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:57.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:57.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:57.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:57.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:57.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:57.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:57.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:57.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.395][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:57.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:57.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.399][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:57.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:57.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:57.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:57.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.406][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:57.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:57.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.410][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:57.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:57.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.414][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:57.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:57.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.417][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-30 20:17:57.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-30 20:17:57.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.421][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-30 20:17:57.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-30 20:17:57.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.425][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-30 20:17:57.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-30 20:17:57.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-30 20:17:57.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-30 20:17:57.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.432][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-30 20:17:57.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-30 20:17:57.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.436][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-30 20:17:57.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-30 20:17:57.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:57.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:57.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.443][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:57.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:57.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:57.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:57.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.450][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:57.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:57.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.454][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:57.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:57.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.463][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:57.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:57.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:57.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:57.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:57.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:57.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:57.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:57.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.478][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:57.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:57.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.482][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:57.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:57.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.485][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:57.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:57.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.489][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:57.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:57.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.492][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:57.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:57.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.496][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:57.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:57.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.500][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:57.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:57.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.503][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:57.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:57.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.507][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:57.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:57.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.511][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-30 20:17:57.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-30 20:17:57.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.514][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-30 20:17:57.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-30 20:17:57.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.518][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-30 20:17:57.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-30 20:17:57.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.522][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-30 20:17:57.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:57.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.525][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:57.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:57.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.529][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:57.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:57.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:57.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:57.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.537][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-30 20:17:57.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:57.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.541][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:57.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:57.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.545][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:57.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:57.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.549][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:57.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:57.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.552][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:57.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:57.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.556][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:57.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:57.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.565][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:57.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:57.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.569][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:57.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:57.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:57.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:57.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.577][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:57.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:57.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:57.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:57.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:57.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:57.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:57.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:57.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:57.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:57.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:57.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:57.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:57.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:57.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-30 20:17:57.602][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-01-30 20:17:57.603][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:57.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:57.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.607][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:57.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:57.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.611][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:57.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:57.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.615][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:57.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:57.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-30 20:17:57.618][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-01-30 20:17:57.619][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-01-30 20:17:57.620][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-30 20:17:57.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:57.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:57.626][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:57.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:57.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:57.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:57.630][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-01-30 20:17:57.631][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-01-30 20:17:57.632][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:57.634][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-01-30 20:17:57.635][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-01-30 20:17:57.637][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-30 20:17:57.638][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-01-30 20:17:57.639][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-01-30 20:17:57.640][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-01-30 20:17:57.641][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-01-30 20:17:57.643][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-30 20:17:57.644][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:57.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:57.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:57.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:57.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:57.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-30 20:17:57.655][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:57.656][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:57.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.657][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:57.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:57.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.667][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:57.668][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:57.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.670][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.671][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:57.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:57.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.675][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-30 20:17:57.676][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-30 20:17:57.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.678][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.679][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-30 20:17:57.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-30 20:17:57.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.683][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-30 20:17:57.684][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-30 20:17:57.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.686][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.687][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-30 20:17:57.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-30 20:17:57.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.691][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-30 20:17:57.692][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-30 20:17:57.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.693][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-30 20:17:57.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-30 20:17:57.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.698][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:57.699][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:57.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.701][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:57.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:57.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.706][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:57.707][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:57.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.709][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.710][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:57.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:57.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.714][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:57.715][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:57.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.716][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.718][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:57.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:57.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.721][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:57.722][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:57.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.724][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:57.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:57.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.729][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:57.730][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:57.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.732][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:57.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:57.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.737][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-30 20:17:57.738][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-30 20:17:57.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.740][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.741][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-30 20:17:57.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-30 20:17:57.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.745][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-30 20:17:57.746][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-30 20:17:57.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.748][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-30 20:17:57.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-30 20:17:57.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.753][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:57.754][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:57.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.756][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:57.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:57.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.761][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:57.762][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:57.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.764][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:57.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:57.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.774][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:57.775][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:57.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.777][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.779][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:57.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:57.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.782][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:57.783][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:57.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.785][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.786][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:57.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:57.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.790][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-30 20:17:57.791][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-30 20:17:57.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.793][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.794][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-30 20:17:57.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-30 20:17:57.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.798][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-01-30 20:17:57.799][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:57.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.801][ef$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.802][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-01-30 20:17:57.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:57.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:57.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:57.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:57.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:57.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:57.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:57.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.817][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-30 20:17:57.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-30 20:17:57.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.821][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-30 20:17:57.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-30 20:17:57.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.825][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-30 20:17:57.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-30 20:17:57.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.829][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-30 20:17:57.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-30 20:17:57.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.832][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-30 20:17:57.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-30 20:17:57.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.836][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-01-30 20:17:57.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-01-30 20:17:57.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-30 20:17:57.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-30 20:17:57.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-30 20:17:57.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-30 20:17:57.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-30 20:17:57.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-30 20:17:57.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:57.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:57.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:57.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:57.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:57.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-01-30 20:17:57.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:57.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:57.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:57.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:57.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:57.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-30 20:17:57.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:57.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:57.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:57.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:57.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.887][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:57.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-30 20:17:57.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:57.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:57.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:57.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:57.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.899][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:57.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-01-30 20:17:57.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.902][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:57.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:57.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.906][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:57.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:57.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.910][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:57.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:57.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.914][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-30 20:17:57.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-30 20:17:57.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.917][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-30 20:17:57.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-30 20:17:57.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.921][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-30 20:17:57.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-30 20:17:57.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-30 20:17:57.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-30 20:17:57.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-30 20:17:57.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-30 20:17:57.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.932][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-30 20:17:57.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-30 20:17:57.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:57.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:57.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.939][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:57.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:57.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:57.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:57.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.947][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:57.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:57.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.950][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:57.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:57.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.954][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:57.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-30 20:17:57.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:57.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:57.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:57.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:57.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:57.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-30 20:17:57.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.969][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:57.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:57.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.977][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:57.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:57.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.982][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:57.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:57.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:57.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:57.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:57.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:57.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.993][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:57.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-30 20:17:57.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:57.997][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:57.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:57.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:57.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.000][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:58.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:58.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.004][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:58.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-01-30 20:17:58.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.008][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-30 20:17:58.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-30 20:17:58.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.011][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-30 20:17:58.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-30 20:17:58.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.015][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-30 20:17:58.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-30 20:17:58.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.019][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-30 20:17:58.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:58.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:58.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:58.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:58.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:58.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-30 20:17:58.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:58.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.033][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-01-30 20:17:58.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-30 20:17:58.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.038][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:58.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:58.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.042][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:58.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:58.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.045][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:58.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:58.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.049][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:58.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:58.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.053][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-30 20:17:58.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-30 20:17:58.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.057][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:58.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:58.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.060][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:58.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:58.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:58.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:58.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.068][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:58.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-01-30 20:17:58.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:58.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:58.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:58.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:58.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:58.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:58.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:58.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:58.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:58.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:58.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-30 20:17:58.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-30 20:17:58.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-30 20:17:58.099][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-01-30 20:17:58.100][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:58.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:58.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.104][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:58.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:58.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.108][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:58.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:58.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.111][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:58.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:58.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-30 20:17:58.115][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-01-30 20:17:58.116][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2025-01-30 20:17:58.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-30 20:17:58.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:58.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:58.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:58.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:58.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:58.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:58.131][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-01-30 20:17:58.132][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-01-30 20:17:58.133][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-01-30 20:17:58.135][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:58.136][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:58.137][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-30 20:17:58.139][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:58.140][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-30 20:17:58.141][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-30 20:17:58.142][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-30 20:17:58.143][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-30 20:17:58.144][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-01-30 20:17:58.145][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-01-30 20:17:58.146][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-01-30 20:17:58.147][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:58.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:58.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.151][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:58.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:58.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.155][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:58.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:58.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.158][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:58.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:58.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.162][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:58.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:58.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.166][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:58.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:58.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.170][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:58.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:58.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-30 20:17:58.173][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-01-30 20:17:58.174][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-01-30 20:17:58.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-30 20:17:58.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:58.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:58.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:58.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:58.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:58.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-30 20:17:58.190][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:58.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:58.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.194][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:58.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:58.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.197][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:58.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:58.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.201][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:58.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:58.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.205][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:58.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:58.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.208][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:58.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:58.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.212][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:58.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:58.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-30 20:17:58.216][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-01-30 20:17:58.216][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-01-30 20:17:58.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-30 20:17:58.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:58.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:58.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:58.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:58.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:58.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-30 20:17:58.230][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-01-30 20:17:58.231][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-01-30 20:17:58.232][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-01-30 20:17:58.234][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:58.235][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:58.236][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-01-30 20:17:58.238][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-01-30 20:17:58.238][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-01-30 20:17:58.240][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-01-30 20:17:58.241][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-01-30 20:17:58.242][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-01-30 20:17:58.242][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-01-30 20:17:58.243][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-01-30 20:17:58.244][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-01-30 20:17:58.246][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:58.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:58.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.250][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:58.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:58.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.253][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:58.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:58.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.257][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:58.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:58.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.261][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:58.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:58.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.264][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:58.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:58.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.268][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:58.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:58.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-30 20:17:58.272][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-01-30 20:17:58.273][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2025-01-30 20:17:58.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-30 20:17:58.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:58.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:58.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:58.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:58.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:58.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-30 20:17:58.289][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:58.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:58.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.292][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:58.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:58.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.296][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:58.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:58.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.300][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:58.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:58.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.303][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:58.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:58.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.307][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:58.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:58.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-30 20:17:58.311][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-30 20:17:58.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-30 20:17:58.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-30 20:17:58.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-30 20:17:58.315][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-01-30 20:17:58.315][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-01-30 20:17:58.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-30 20:17:58.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:58.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:58.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:58.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:58.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:58.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-01-30 20:17:58.331][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-01-30 20:17:58.333][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-01-30 20:17:58.334][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-01-30 20:17:58.334][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-01-30 20:17:58.335][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-30 20:17:58.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-30 20:17:58.337][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-30 20:17:58.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-30 20:17:58.339][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-01-30 20:17:58.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
>
> proc.time()
user system elapsed
8.379 0.325 11.686